CF417331

Overview
NameCF417331
Unique NameCF417331
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length675
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3530 contig Csv1_Contig3530:1360..2034. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417331 vs. ExPASy Swiss-Prot
Match: ILV5_ARATH (Ketol-acid reductoisomerase, chloroplastic OS=Arabidopsis thaliana GN=At3g58610 PE=2 SV=2)

HSP 1 Score: 332.028 bits (850), Expect = 1.701e-90
Identity = 164/176 (93.18%), Postives = 167/176 (94.89%), Query Frame = 2
Query:    2 FYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLHPFTAGVYAALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVDNDAPINGDLISNFLSDPVHGAIEVCAQLRPTVDISVPPDADFVRPELRQGSN 529
            FYEKEGLPAFPMG IDQTRMWKVGERVR +RPAGDLGPL+PFTAGVY ALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVD+ A IN DLISNF SDPVHGAIEVCAQLRPTVDISVP DADFVRPELRQ SN
Sbjct:  416 FYEKEGLPAFPMGNIDQTRMWKVGERVRKSRPAGDLGPLYPFTAGVYVALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVDSGAAINRDLISNFFSDPVHGAIEVCAQLRPTVDISVPADADFVRPELRQSSN 591          
BLAST of CF417331 vs. ExPASy Swiss-Prot
Match: ILV5_PEA (Ketol-acid reductoisomerase, chloroplastic OS=Pisum sativum GN=PGAAIR PE=2 SV=1)

HSP 1 Score: 330.102 bits (845), Expect = 6.462e-90
Identity = 161/176 (91.48%), Postives = 170/176 (96.59%), Query Frame = 2
Query:    2 FYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLHPFTAGVYAALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVDNDAPINGDLISNFLSDPVHGAIEVCAQLRPTVDISVPPDADFVRPELRQGSN 529
            FYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPL+PFTAGV+ A+MMAQIE+LRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVD+ APIN DLISNF+SDPVHGAI+VCA+LRPT+DISVP  ADFVRPELRQ SN
Sbjct:  406 FYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLYPFTAGVFVAMMMAQIEVLRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVDSGAPINQDLISNFVSDPVHGAIQVCAELRPTLDISVPAAADFVRPELRQCSN 581          
BLAST of CF417331 vs. ExPASy Swiss-Prot
Match: ILV5_ORYSJ (Ketol-acid reductoisomerase, chloroplastic OS=Oryza sativa subsp. japonica GN=Os05g0573700 PE=1 SV=1)

HSP 1 Score: 328.176 bits (840), Expect = 2.456e-89
Identity = 159/175 (90.86%), Postives = 165/175 (94.29%), Query Frame = 2
Query:    2 FYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLHPFTAGVYAALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVDNDAPINGDLISNFLSDPVHGAIEVCAQLRPTVDISVPPDADFVRPELRQGS 526
            FYEKEGLPAFPMG IDQTRMWKVGE+VRSTRP  DLGPLHPFTAGVY ALMMAQIE+LRKKGHSYSEIINESVIESVDSLNPFMHARGV+FMVDNCSTTARLGSRKWAPRFDYILTQQA V VD DAPIN DLISNF+SDPVHGAIEVCA+LRPTVDISVP +ADFVRPELRQ S
Sbjct:  404 FYEKEGLPAFPMGNIDQTRMWKVGEKVRSTRPENDLGPLHPFTAGVYVALMMAQIEVLRKKGHSYSEIINESVIESVDSLNPFMHARGVAFMVDNCSTTARLGSRKWAPRFDYILTQQAFVTVDKDAPINQDLISNFMSDPVHGAIEVCAELRPTVDISVPANADFVRPELRQSS 578          
BLAST of CF417331 vs. ExPASy Swiss-Prot
Match: ILV5_SPIOL (Ketol-acid reductoisomerase, chloroplastic OS=Spinacia oleracea GN=AHRI PE=1 SV=1)

HSP 1 Score: 323.553 bits (828), Expect = 6.049e-88
Identity = 160/173 (92.49%), Postives = 165/173 (95.38%), Query Frame = 2
Query:    2 FYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLHPFTAGVYAALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVDNDAPINGDLISNFLSDPVHGAIEVCAQLRPTVDISVPPDADFVRPELRQ 520
            FYEKEGLPAFPMGKIDQTRMWKVGE+VRS RPAGDLGPL+PFTAGVY ALMMAQIEILRKKGHSYSEIINESVIE+VDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYIL+QQALVAVDN APIN DLISNFLSDPVH AI VCAQLRP+VDISV  DADFVRPELRQ
Sbjct:  422 FYEKEGLPAFPMGKIDQTRMWKVGEKVRSVRPAGDLGPLYPFTAGVYVALMMAQIEILRKKGHSYSEIINESVIEAVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILSQQALVAVDNGAPINQDLISNFLSDPVHEAIGVCAQLRPSVDISVTADADFVRPELRQ 594          
BLAST of CF417331 vs. ExPASy Swiss-Prot
Match: ILV5_NEUCR (Ketol-acid reductoisomerase, mitochondrial OS=Neurospora crassa GN=ilv-2 PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.056e-11
Identity = 39/86 (45.35%), Postives = 53/86 (61.63%), Query Frame = 2
Query:  149 LMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVDN---DAPINGD 397
            + +AQ E+LR++GHS SE  NE+V E+  SL P + A G+ +M D CSTTAR G+  W P+F     + AL  V N   D+  NGD
Sbjct:  276 MFLAQYEVLRERGHSPSEAFNETVEEATQSLYPLIGAHGMDWMFDACSTTARRGAIDWTPKF-----KDALKPVFNNLYDSVKNGD 356          
The following BLAST results are available for this feature:
BLAST of CF417331 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
ILV5_ARATH1.701e-9093.18Ketol-acid reductoisomerase, chloroplastic OS=Arab... [more]
ILV5_PEA6.462e-9091.48Ketol-acid reductoisomerase, chloroplastic OS=Pisu... [more]
ILV5_ORYSJ2.456e-8990.86Ketol-acid reductoisomerase, chloroplastic OS=Oryz... [more]
ILV5_SPIOL6.049e-8892.49Ketol-acid reductoisomerase, chloroplastic OS=Spin... [more]
ILV5_NEUCR2.056e-1145.35Ketol-acid reductoisomerase, mitochondrial OS=Neur... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-261 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_A08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417331 ID=CF417331; Name=CF417331; organism=Citrus sinensis; type=EST; length=675bp
GTTTTATGAAAAGGAAGGTCTACCAGCTTTCCCTATGGGAAAAATTGATC
AGACTCGCATGTGGAAAGTTGGTGAGCGAGTCCGATCAACACGTCCAGCA
GGTGACTTAGGCCCATTACACCCATTCACAGCAGGTGTTTATGCGGCTCT
GATGATGGCCCAGATTGAGATCCTGAGGAAGAAAGGGCACTCCTATTCTG
AGATCATCAATGAAAGTGTGATTGAGTCAGTGGATTCATTGAATCCATTC
ATGCATGCTCGTGGAGTTTCATTTATGGTGGACAACTGCTCTACCACAGC
CCGTTTGGGATCAAGGAAATGGGCCCCTCGTTTTGATTACATCCTGACAC
AACAAGCCTTGGTGGCAGTGGACAATGATGCCCCCATCAATGGGGATCTC
ATCAGCAACTTCCTTTCTGATCCAGTCCATGGAGCCATTGAAGTCTGTGC
TCAGTTGAGACCAACTGTTGACATTTCAGTGCCACCAGATGCAGATTTTG
TGCGCCCAGAGTTGCGTCAGGGTAGCAATTGAGTCCTGGTGAGTCCTTAA
TTTTTTTGTTTCTAGCCCAAAAAATAATTCCCCCTAGGGATATTGGAGGT
AGAGACTTTGCTTANTCGTGTGAGTTGCCGCTTATTTATTTAGTGTGCTG
GGCGAGTGTTGCACTATGTCCGGTT
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