CF417335

Overview
NameCF417335
Unique NameCF417335
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length568
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3442 contig Csv1_Contig3442:510..1083. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF417335 vs. ExPASy Swiss-Prot
Match: RS4_PRUAR (40S ribosomal protein S4 OS=Prunus armeniaca GN=RPS4 PE=2 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 2.088e-50
Identity = 94/103 (91.26%), Postives = 101/103 (98.06%), Query Frame = 3 
Query:    3 LIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 311
            LIKANDTIKLDLE NKITDFIKFDVGN+VMVTGGRNRGRVG+IKNREKHKGSFETIH+QDA GHEFATRLGNVFTIGKG+KPWVSLPKGKGIKL+I+EEA+KR
Sbjct:  149 LIKANDTIKLDLETNKITDFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLTILEEAKKR 251
[Close]
BLAST of CF417335 vs. ExPASy Swiss-Prot
Match: RS4_GOSHI (40S ribosomal protein S4 OS=Gossypium hirsutum GN=RPS4 PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 6.075e-50
Identity = 95/103 (92.23%), Postives = 99/103 (96.12%), Query Frame = 3 
Query:    3 LIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 311
            LIKANDTIKLDLE NKI DFIKFDVGN+VMVTGGRNRGRVG+IKNREKHKGSFETIH+QDA GHEFATRLGNVFTIGKG+KPWVSLPK KGIKLSIIEEARKR
Sbjct:  153 LIKANDTIKLDLESNKIVDFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHVQDAAGHEFATRLGNVFTIGKGTKPWVSLPKRKGIKLSIIEEARKR 255
[Close]
BLAST of CF417335 vs. ExPASy Swiss-Prot
Match: RS42_ARATH (40S ribosomal protein S4-2 OS=Arabidopsis thaliana GN=RPS4B PE=2 SV=4)

HSP 1 Score: 195.282 bits (495), Expect = 1.768e-49
Identity = 93/103 (90.29%), Postives = 100/103 (97.09%), Query Frame = 3 
Query:    3 LIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 311
            LIK NDTIKLDLEENKI +FIKFDVGN+VMVTGGRNRGRVG+IKNREKHKGSFETIHIQD+ GHEFATRLGNV+TIGKG+KPWVSLPKGKGIKL+IIEEARKR
Sbjct:  153 LIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKGKGIKLTIIEEARKR 255
[Close]
BLAST of CF417335 vs. ExPASy Swiss-Prot
Match: RS41_ARATH (40S ribosomal protein S4-1 OS=Arabidopsis thaliana GN=RPS4A PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 1.768e-49
Identity = 93/103 (90.29%), Postives = 100/103 (97.09%), Query Frame = 3 
Query:    3 LIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 311
            LIK NDTIKLDLEENKI +FIKFDVGN+VMVTGGRNRGRVG+IKNREKHKGSFETIHIQD+ GHEFATRLGNV+TIGKG+KPWVSLPKGKGIKL+IIEEARKR
Sbjct:  153 LIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKGKGIKLTIIEEARKR 255
[Close]
BLAST of CF417335 vs. ExPASy Swiss-Prot
Match: RS4_SOLTU (40S ribosomal protein S4 OS=Solanum tuberosum GN=RPS4 PE=2 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 2.309e-49
Identity = 92/103 (89.32%), Postives = 100/103 (97.09%), Query Frame = 3 
Query:    3 LIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 311
            LIKANDTIKLDLE NKI DFIKFDVGN+VMVTGGRNRGRVG+IKNREKHKGSFET+HIQD+ GHEFATRLGNVFT+GKG+KPWVSLPKGKGIKL+IIE+ARKR
Sbjct:  153 LIKANDTIKLDLESNKIVDFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETLHIQDSQGHEFATRLGNVFTLGKGTKPWVSLPKGKGIKLTIIEDARKR 255
[Close]
BLAST of CF417335 vs. ExPASy Swiss-Prot
Match: RS4_ORYSJ (40S ribosomal protein S4 OS=Oryza sativa subsp. japonica GN=RPS4 PE=2 SV=3)

HSP 1 Score: 193.356 bits (490), Expect = 6.717e-49
Identity = 91/103 (88.35%), Postives = 99/103 (96.12%), Query Frame = 3 
Query:    3 LIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 311
            +IKANDTIK+DLE NKI DFIKFDVGN+VMVTGGRN GRVG+IKNREKHKGSFETIH++DALGH+FATRLGNVFTIGKG+KPWVSLPKGKGIKLSIIEE RKR
Sbjct:  153 IIKANDTIKIDLETNKIVDFIKFDVGNVVMVTGGRNTGRVGVIKNREKHKGSFETIHVEDALGHQFATRLGNVFTIGKGNKPWVSLPKGKGIKLSIIEEQRKR 255
[Close]
BLAST of CF417335 vs. ExPASy Swiss-Prot
Match: RS43_ARATH (40S ribosomal protein S4-3 OS=Arabidopsis thaliana GN=RPS4D PE=2 SV=2)

HSP 1 Score: 192.971 bits (489), Expect = 8.773e-49
Identity = 92/103 (89.32%), Postives = 99/103 (96.12%), Query Frame = 3 
Query:    3 LIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 311
            LIK NDTIKLDLE NKI +FIKFDVGN+VMVTGGRNRGRVG+IKNREKHKGSFETIHIQD+ GHEFATRLGNV+TIGKG+KPWVSLPKGKGIKL+IIEEARKR
Sbjct:  153 LIKPNDTIKLDLEANKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKGKGIKLTIIEEARKR 255
[Close]
BLAST of CF417335 vs. ExPASy Swiss-Prot
Match: RS4_MAIZE (40S ribosomal protein S4 OS=Zea mays GN=RPS4 PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.496e-48
Identity = 90/103 (87.38%), Postives = 99/103 (96.12%), Query Frame = 3 
Query:    3 LIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 311
            LIKANDTIK+DLE NKI DFIKFDVGN+VMVTGGRN GRVG+IKNREKHKGSFETIH++D+LGH+FATR+GNVFTIGKG+KPWVSLPKGKGIKLSIIEE RKR
Sbjct:  153 LIKANDTIKIDLETNKIVDFIKFDVGNVVMVTGGRNTGRVGVIKNREKHKGSFETIHVEDSLGHQFATRMGNVFTIGKGNKPWVSLPKGKGIKLSIIEEQRKR 255
[Close]
BLAST of CF417335 vs. ExPASy Swiss-Prot
Match: RS4X_MONDO (40S ribosomal protein S4, X isoform OS=Monodelphis domestica GN=RPS4X PE=2 SV=3)

HSP 1 Score: 155.221 bits (391), Expect = 2.027e-37
Identity = 70/103 (67.96%), Postives = 86/103 (83.50%), Query Frame = 3 
Query:    3 LIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 311
            LIK NDTI++DLE  KITDFIKFD GN+ MVTGG N GR+G+I NREKH GSF+ +H++DA G+ FATRL N+F IGKG+KPW+SLP+GKGI+L+I EE  KR
Sbjct:  153 LIKMNDTIQIDLETGKITDFIKFDTGNMCMVTGGANLGRIGVITNREKHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKR 255
[Close]
BLAST of CF417335 vs. ExPASy Swiss-Prot
Match: RS4_XENTR (40S ribosomal protein S4 OS=Xenopus tropicalis GN=rps4 PE=2 SV=3)

HSP 1 Score: 154.836 bits (390), Expect = 2.648e-37
Identity = 69/103 (66.99%), Postives = 86/103 (83.50%), Query Frame = 3 
Query:    3 LIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 311
            LIK NDTI++DLE  KITDFIKFD GN+ MVTGG N GR+G+I NRE+H GSF+ +H++DA G+ FATRL N+F IGKG+KPW+SLP+GKGI+L+I EE  KR
Sbjct:  153 LIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKR 255
The following BLAST results are available for this feature:
BLAST of CF417335 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
RS4_PRUAR2.088e-5091.2640S ribosomal protein S4 OS=Prunus armeniaca GN=RP... [more]
RS4_GOSHI6.075e-5092.2340S ribosomal protein S4 OS=Gossypium hirsutum GN=... [more]
RS42_ARATH1.768e-4990.2940S ribosomal protein S4-2 OS=Arabidopsis thaliana... [more]
RS41_ARATH1.768e-4990.2940S ribosomal protein S4-1 OS=Arabidopsis thaliana... [more]
RS4_SOLTU2.309e-4989.3240S ribosomal protein S4 OS=Solanum tuberosum GN=R... [more]
RS4_ORYSJ6.717e-4988.3540S ribosomal protein S4 OS=Oryza sativa subsp. ja... [more]
RS43_ARATH8.773e-4989.3240S ribosomal protein S4-3 OS=Arabidopsis thaliana... [more]
RS4_MAIZE1.496e-4887.3840S ribosomal protein S4 OS=Zea mays GN=RPS4 PE=2 ... [more]
RS4X_MONDO2.027e-3767.9640S ribosomal protein S4, X isoform OS=Monodelphis... [more]
RS4_XENTR2.648e-3766.9940S ribosomal protein S4 OS=Xenopus tropicalis GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-265 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_B01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417335 ID=CF417335; Name=CF417335; organism=Citrus sinensis; type=EST; length=568bp
CACTCATCAAAGCCAATGATACCATCAAACTTGACTTAGAAGAGAACAAG
ATCACTGACTTCATCAAGTTTGATGTTGGGAATATTGTCATGGTCACTGG
GGGTAGAAACAGAGGTCGGGTTGGAATCATCAAGAACAGGGAAAAGCATA
AGGGAAGTTTTGAGACCATCCATATTCAAGATGCCCTTGGTCATGAGTTT
GCAACTCGTCTAGGCAATGTGTTCACCATCGGGAAGGGTTCAAAACCATG
GGTGTCACTTCCTAAGGGCAAGGGTATTAAGTTGTCCATCATTGAGGAAG
CTAGGAAGAGACAGGCTGCCCAGGCTGCTGCTTAAGCTTTTACAATGAAT
TTGGATACATTTTGCTGCTTTGTTTTTTCTTGTTGAATTAGAGCTGATTG
GCACTCTCTAAAGCTGAAGTAGGACGGATGCAAAAATGAATCTTTATTTT
TATTTTATCAGCACAATTTTGAACCTGCTTTGTCCTTTTTTATTTTAGCT
ACTATTTTGGTGGATGTTATTTTCAACTATTTAATCTAAGTTCATGTATC
TCTTTATCGTTTCTGTTT
back to top