CF417340

Overview
NameCF417340
Unique NameCF417340
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length664
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5165 contig Csv1_Contig5165:362..1025. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417340 vs. ExPASy Swiss-Prot
Match: DHP1_CAEBR (Dihydropyrimidinase 1 OS=Caenorhabditis briggsae GN=dhp-1 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.093e-25
Identity = 53/103 (51.46%), Postives = 73/103 (70.87%), Query Frame = 2
Query:   14 YVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEM---RPFNYLFH 313
            YV +TS   A+IFN+YP+KG I VGSDADI+IFNPN++  I+A +HH  LD N++EG +  G  E+TI+ GR+VW N +L  VPGSGK++ +    PF +  H
Sbjct:  371 YVSITSATAAKIFNIYPKKGRIAVGSDADIVIFNPNATRTISAETHHHNLDFNIFEGIKCHGVAEITISRGRIVWANGQLQTVPGSGKFVPLLANSPFVFSSH 473          
BLAST of CF417340 vs. ExPASy Swiss-Prot
Match: DHP1_CAEEL (Dihydropyrimidinase 1 OS=Caenorhabditis elegans GN=dhp-1 PE=1 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.208e-24
Identity = 54/103 (52.43%), Postives = 72/103 (69.90%), Query Frame = 2
Query:   14 YVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEM---RPFNYLFH 313
            YV +TS+  A+IFN+YPRKG I VGSDADI+IFNPN++  I+  +HH  LD N++EG    G  EVTI+ GR+VW + +L  VPGSGK+I +    PF +  H
Sbjct:  371 YVSITSSTAAKIFNIYPRKGRIAVGSDADIVIFNPNATRTISKDTHHHNLDFNIFEGINCHGVAEVTISRGRIVWAHGKLQTVPGSGKFIPLLANSPFVFSTH 473          
BLAST of CF417340 vs. ExPASy Swiss-Prot
Match: DPYS_DICDI (Dihydropyrimidinase OS=Dictyostelium discoideum GN=pyd2 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.336e-23
Identity = 49/106 (46.23%), Postives = 73/106 (68.87%), Query Frame = 2
Query:   14 YVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPFNYLFHGLDKAD 331
            +VR TS+E ARIFN+YPRKG I VG D DI+I++PN S  I+  +HH  +D N++EG +V G    TI  G +VW +++L+ V GSG+++   PF  +F G+++ D
Sbjct:  373 FVRATSSEAARIFNIYPRKGRIDVGCDGDIVIWDPNQSKTISKDTHHHAVDFNIFEGIKVTGIAVTTIVAGNIVWSDNKLSCVKGSGRFVPRPPFGPVFDGIEQRD 478          
BLAST of CF417340 vs. ExPASy Swiss-Prot
Match: HYDA_PSEAE (D-hydantoinase/dihydropyrimidinase OS=Pseudomonas aeruginosa GN=dht PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 9.572e-22
Identity = 45/108 (41.67%), Postives = 76/108 (70.37%), Query Frame = 2
Query:    2 SVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPFNYLFHGLDK 325
            S+ ++V LTST  A+IFN++PRKGAI VG+DAD+++++P  S  ++A +HH R+D N++EGR V+G    TI+ G+++W   +L   PG+G+Y+E   +  ++  L +
Sbjct:  360 SMHEFVALTSTNTAKIFNLFPRKGAIRVGADADLVLWDPQGSRTLSAATHHQRVDFNIFEGRTVRGIPSHTISQGKLLWAAGDLRAEPGAGRYVERPAYPSVYEVLGR 467          
BLAST of CF417340 vs. ExPASy Swiss-Prot
Match: DHP2_CAEEL (Dihydropyrimidinase 2 OS=Caenorhabditis elegans GN=dhp-2 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.250e-21
Identity = 47/94 (50.00%), Postives = 67/94 (71.28%), Query Frame = 2
Query:   14 YVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRP 295
            +V +TST  A+IFN YP+KG I VGSDADI+I+N N++  I+  +HH  +D N++EG +V G  E+TI+ GR VW N +L  V GSG++I + P
Sbjct:  367 FVAVTSTMAAKIFNCYPQKGRIAVGSDADIVIWNANATRTISKDTHHHAIDFNIFEGMQVHGVPEITISRGRTVWANGQLKTVQGSGQFIPLAP 460          
BLAST of CF417340 vs. ExPASy Swiss-Prot
Match: DPYS_MOUSE (Dihydropyrimidinase OS=Mus musculus GN=Dpys PE=2 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 6.204e-21
Identity = 52/120 (43.33%), Postives = 78/120 (65.00%), Query Frame = 2
Query:   14 YVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPF-NYLFHGLDKADAKYLSSLQAPVKR 370
            +V +TST  A+IFN+YP+KG I VGSDADI+I++P ++  I+A++HH  ++ N++EG    G   VTI+ GRVV+E    NV  G GK+I  +PF  Y++  + + D    +    PVKR
Sbjct:  374 FVAVTSTNAAKIFNLYPKKGRIAVGSDADIVIWDPEATRRISAKTHHQAVNFNIFEGMVCHGVPLVTISRGRVVYEAGVFNVTAGHGKFIPRQPFAEYIYKRIKQRDQ---TCTPVPVKR 490          
BLAST of CF417340 vs. ExPASy Swiss-Prot
Match: DHP2_CAEBR (Dihydropyrimidinase 2 OS=Caenorhabditis briggsae GN=dhp-2 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.103e-21
Identity = 44/94 (46.81%), Postives = 66/94 (70.21%), Query Frame = 2
Query:   14 YVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRP 295
            +V +TST  A+IFN YPRKG I VGSDADI+++N N++  I+  +HH  +D N++EG +V G  E TI  GR+VW + +L  V G+G+++ + P
Sbjct:  367 FVAVTSTMAAKIFNCYPRKGRIAVGSDADIVVWNANATRTISKDTHHHAIDFNIFEGMQVHGVPETTICRGRIVWADGQLRTVQGAGRFVPLPP 460          
BLAST of CF417340 vs. ExPASy Swiss-Prot
Match: DPYL2_PONAB (Dihydropyrimidinase-related protein 2 OS=Pongo abelii GN=DPYSL2 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.058e-20
Identity = 45/95 (47.37%), Postives = 70/95 (73.68%), Query Frame = 2
Query:   14 YVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPF 298
            +V +TST  A++FN+YPRKG I VGSDAD++I++P+S   I+A++H+S L+ N++EG   +G   V I+ G++V E+  L+V  GSG+YI  +PF
Sbjct:  380 FVAVTSTNAAKVFNLYPRKGRIAVGSDADLVIWDPDSVKTISAKTHNSSLEYNIFEGMECRGSPLVVISQGKIVLEDGTLHVTEGSGRYIPRKPF 474          
BLAST of CF417340 vs. ExPASy Swiss-Prot
Match: DPYL2_HUMAN (Dihydropyrimidinase-related protein 2 OS=Homo sapiens GN=DPYSL2 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.058e-20
Identity = 45/95 (47.37%), Postives = 70/95 (73.68%), Query Frame = 2
Query:   14 YVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPF 298
            +V +TST  A++FN+YPRKG I VGSDAD++I++P+S   I+A++H+S L+ N++EG   +G   V I+ G++V E+  L+V  GSG+YI  +PF
Sbjct:  380 FVAVTSTNAAKVFNLYPRKGRIAVGSDADLVIWDPDSVKTISAKTHNSSLEYNIFEGMECRGSPLVVISQGKIVLEDGTLHVTEGSGRYIPRKPF 474          
BLAST of CF417340 vs. ExPASy Swiss-Prot
Match: DPYL2_BOVIN (Dihydropyrimidinase-related protein 2 OS=Bos taurus GN=DPYSL2 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.058e-20
Identity = 45/95 (47.37%), Postives = 70/95 (73.68%), Query Frame = 2
Query:   14 YVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPF 298
            +V +TST  A++FN+YPRKG I VGSDAD++I++P+S   I+A++H+S L+ N++EG   +G   V I+ G++V E+  L+V  GSG+YI  +PF
Sbjct:  380 FVAVTSTNAAKVFNLYPRKGRIAVGSDADLVIWDPDSVKTISAKTHNSSLEYNIFEGMECRGSPLVVISQGKIVLEDGTLHVTEGSGRYIPRKPF 474          
The following BLAST results are available for this feature:
BLAST of CF417340 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
DHP1_CAEBR1.093e-2551.46Dihydropyrimidinase 1 OS=Caenorhabditis briggsae G... [more]
DHP1_CAEEL1.208e-2452.43Dihydropyrimidinase 1 OS=Caenorhabditis elegans GN... [more]
DPYS_DICDI1.336e-2346.23Dihydropyrimidinase OS=Dictyostelium discoideum GN... [more]
HYDA_PSEAE9.572e-2241.67D-hydantoinase/dihydropyrimidinase OS=Pseudomonas ... [more]
DHP2_CAEEL1.250e-2150.00Dihydropyrimidinase 2 OS=Caenorhabditis elegans GN... [more]
DPYS_MOUSE6.204e-2143.33Dihydropyrimidinase OS=Mus musculus GN=Dpys PE=2 S... [more]
DHP2_CAEBR8.103e-2146.81Dihydropyrimidinase 2 OS=Caenorhabditis briggsae G... [more]
DPYL2_PONAB1.058e-2047.37Dihydropyrimidinase-related protein 2 OS=Pongo abe... [more]
DPYL2_HUMAN1.058e-2047.37Dihydropyrimidinase-related protein 2 OS=Homo sapi... [more]
DPYL2_BOVIN1.058e-2047.37Dihydropyrimidinase-related protein 2 OS=Bos tauru... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-270 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_B07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417340 ID=CF417340; Name=CF417340; organism=Citrus sinensis; type=EST; length=664bp
TTCTGTGACTGATTATGTCAGGTTAACTAGCACTGAATGTGCTAGAATAT
TCAACGTATATCCCAGGAAAGGAGCAATTCTTGTTGGATCTGATGCAGAT
ATAATTATATTCAACCCAAATTCAAGCTTTGAAATTACTGCAAGGTCCCA
CCACTCTAGATTAGATACAAATGTCTATGAGGGCAGGAGAGTAAAAGGGA
AGGTTGAAGTGACGATTGCTGGTGGCAGGGTTGTTTGGGAAAATGATGAA
CTGAATGTCGTTCCAGGTTCTGGAAAGTACATAGAAATGCGTCCCTTTAA
TTATCTTTTTCATGGACTTGACAAAGCTGATGCTAAGTATTTATCTTCCC
TCCAAGCTCCAGTGAAGCGTCTTAAGTCCTCGACCTAGATTGCAGGTATT
AGCTTCTTTTTTTTTTCAGTTGTTGGAACTAAATTAGAAGGAAAATCATG
CCCAATGTTCAGATTTGTGTTGAGCTGTGAACTATGACAAATAAATTCAG
CTGTTTATCCGCCTGGACAAAAGAAACAAACACTGCATCCAATTTGTAAA
ATATGTATACCTGTTAATAAATTTTTTTTACAGAAGTTGTAATTAGATTA
TTCTGTTTTCTTTGTCTCGTCTGGGGACAATAGATGCAATAAAAATTTGA
ACAATTCTTAAAAA
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