CF417341 | Citrus Genome Database

Overview


Name	CF417341
Unique Name	CF417341
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	683

Libraries


Library Name	Type
Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig6266	contig	Csv1_Contig6266:98..780.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CF417341 vs. ExPASy Swiss-Prot
Match: RL4_PRUAR (60S ribosomal protein L4 OS=Prunus armeniaca GN=RPL4 PE=2 SV=1)

HSP 1 Score: 387.497 bits (994), Expect = 3.503e-107
Identity = 196/227 (86.34%), Postives = 202/227 (88.99%), Query Frame = 1

Query:    1 AAARPLVTVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGKCGRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAECVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLXVYSAEGAKLVKAFRNI 681
            AAARPLVTVQSLEGDMATD + TV LPDVMKASIRPDIV FVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFG   RGGRMFAPTKIWRRWHRKINVNQKRY           PSLV+ARGHKIETVPE+PLVVSDS E VE+TSAALKVLKQIGAY+DAEKAKDS  IRPGKGKMRNRRYI+RKGPL VY  EGAKLVKAFRNI
Sbjct:    6 AAARPLVTVQSLEGDMATDQTQTVALPDVMKASIRPDIVTFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYAVVSAIAASAVPSLVLARGHKIETVPELPLVVSDSIEGVEETSAALKVLKQIGAYSDAEKAKDSHSIRPGKGKMRNRRYINRKGPLIVYGTEGAKLVKAFRNI 232

[Close]

BLAST of CF417341 vs. ExPASy Swiss-Prot
Match: RL4A_ARATH (60S ribosomal protein L4-1 OS=Arabidopsis thaliana GN=RPL4A PE=2 SV=1)

HSP 1 Score: 368.622 bits (945), Expect = 1.684e-101
Identity = 182/227 (80.18%), Postives = 197/227 (86.78%), Query Frame = 1

Query:    1 AAARPLVTVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGKCGRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAECVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLXVYSAEGAKLVKAFRNI 681
            AAARPLVT+Q+L+GDM+TD SSTV LPDVM A +RPDIV FVH+ IS NSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQ AFG   RGGRMFAPTKIWRRWHR++NVN KR+           P+LVMARGHKIE VPEMPLVVSDSAE VEKTSAA+KVLKQIGAY DAEKAK+S GIRPGKGKMRNRRYISRKGPL VY  EG+K+VKAFRN+
Sbjct:    4 AAARPLVTIQTLDGDMSTDQSSTVVLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVNMKRHAIVSAIAATAVPALVMARGHKIENVPEMPLVVSDSAEAVEKTSAAIKVLKQIGAYDDAEKAKNSIGIRPGKGKMRNRRYISRKGPLVVYGTEGSKIVKAFRNL 230

[Close]

BLAST of CF417341 vs. ExPASy Swiss-Prot
Match: RL4B_ARATH (60S ribosomal protein L4-2 OS=Arabidopsis thaliana GN=RPL4D PE=1 SV=2)

HSP 1 Score: 367.466 bits (942), Expect = 3.751e-101
Identity = 182/227 (80.18%), Postives = 196/227 (86.34%), Query Frame = 1

Query:    1 AAARPLVTVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGKCGRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAECVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLXVYSAEGAKLVKAFRNI 681
            AAARPLVTVQ L+GDM+TD S+TV LPDVM A +RPDIV FVH+ IS NSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQ AFG   RGGRMFAPTKIWRRWHR++NVN KR+           P+LVMARGHKIE VPEMPLVVSDSAE VEKTSAA+KVLKQIGAY DAEKAK+S GIRPGKGKMRNRRYISRKGPL V+  EGAK+VKAFRN+
Sbjct:    5 AAARPLVTVQGLDGDMSTDQSTTVTLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVNMKRHAIVSAIAATAVPALVMARGHKIENVPEMPLVVSDSAEAVEKTSAAIKVLKQIGAYDDAEKAKNSIGIRPGKGKMRNRRYISRKGPLVVFGTEGAKIVKAFRNL 231

[Close]

BLAST of CF417341 vs. ExPASy Swiss-Prot
Match: RL4_MOUSE (60S ribosomal protein L4 OS=Mus musculus GN=Rpl4 PE=1 SV=3)

HSP 1 Score: 272.707 bits (696), Expect = 1.258e-72
Identity = 135/227 (59.47%), Postives = 168/227 (74.01%), Query Frame = 1

Query:    1 AAARPLVTVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGKCGRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAECVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLXVYSAEGAKLVKAFRNI 681
            A ARPL++V S +G+    +   V LP V KA IRPDIV FVH+N+ KN+RQPYAVS+ AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFG   RGGRMFAPTK WRRWHR++N  QKRY           P+LVM++GH+IE VPE+PLVV D  E  +KT  A+++LK++ A+ D +K   SQ +R GKGKMRNRR I R+GP  +Y+ +   ++KAFRNI
Sbjct:    2 ACARPLISVYSEKGE---SSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVQLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNEDNG-IIKAFRNI 224

[Close]

BLAST of CF417341 vs. ExPASy Swiss-Prot
Match: RL4A_XENLA (60S ribosomal protein L4-A OS=Xenopus laevis GN=rpl4-A PE=2 SV=1)

HSP 1 Score: 271.937 bits (694), Expect = 2.145e-72
Identity = 135/227 (59.47%), Postives = 167/227 (73.57%), Query Frame = 1

Query:    1 AAARPLVTVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGKCGRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAECVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLXVYSAEGAKLVKAFRNI 681
            A ARPL++V S +G+    +   V +P V +A IRPDIV FVH+N+ KN+RQPYAVSK AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFG   RGGRMFAPTK WRRWHR++N  QKRY           P+L+M++GH+IE +PE+PLVV D  E  +KT  A+ +LK++ A+ D +K   SQ +R GKGKMRNRR I R+GP  +Y+ E   LVKAFRNI
Sbjct:    6 ACARPLISVYSEKGE---SSGKNVTMPAVFRAPIRPDIVNFVHTNLRKNNRQPYAVSKLAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAVCSALAASALPALIMSKGHRIEEIPEVPLVVEDKVESYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCVIYN-ENNGLVKAFRNI 228

[Close]

BLAST of CF417341 vs. ExPASy Swiss-Prot
Match: RL4_HUMAN (60S ribosomal protein L4 OS=Homo sapiens GN=RPL4 PE=1 SV=5)

HSP 1 Score: 271.552 bits (693), Expect = 2.801e-72
Identity = 135/227 (59.47%), Postives = 167/227 (73.57%), Query Frame = 1

Query:    1 AAARPLVTVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGKCGRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAECVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLXVYSAEGAKLVKAFRNI 681
            A ARPL++V S +G+    +   V LP V KA IRPDIV FVH+N+ KN+RQPYAVS+ AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFG   RGGRMFAPTK WRRWHR++N  QKRY           P+LVM++GH+IE VPE+PLVV D  E  +KT  A+ +LK++ A+ D +K   SQ +R GKGKMRNRR I R+GP  +Y+ +   ++KAFRNI
Sbjct:    2 ACARPLISVYSEKGE---SSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNEDNG-IIKAFRNI 224

[Close]

BLAST of CF417341 vs. ExPASy Swiss-Prot
Match: RL4_BOVIN (60S ribosomal protein L4 OS=Bos taurus GN=RPL4 PE=2 SV=3)

HSP 1 Score: 271.552 bits (693), Expect = 2.801e-72
Identity = 135/227 (59.47%), Postives = 167/227 (73.57%), Query Frame = 1

Query:    1 AAARPLVTVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGKCGRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAECVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLXVYSAEGAKLVKAFRNI 681
            A ARPL++V S +G+    +   V LP V KA IRPDIV FVH+N+ KN+RQPYAVS+ AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFG   RGGRMFAPTK WRRWHR++N  QKRY           P+LVM++GH+IE VPE+PLVV D  E  +KT  A+ +LK++ A+ D +K   SQ +R GKGKMRNRR I R+GP  +Y+ +   ++KAFRNI
Sbjct:    2 ACARPLISVYSEKGE---SSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNEDNG-IIKAFRNI 224

[Close]

BLAST of CF417341 vs. ExPASy Swiss-Prot
Match: RL4B_XENLA (60S ribosomal protein L4-B (Fragment) OS=Xenopus laevis GN=rpl4-B PE=2 SV=1)

HSP 1 Score: 271.552 bits (693), Expect = 2.801e-72
Identity = 134/227 (59.03%), Postives = 167/227 (73.57%), Query Frame = 1

Query:    1 AAARPLVTVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGKCGRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAECVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLXVYSAEGAKLVKAFRNI 681
            A ARPL++V S +G+ +      V +P V KA IRPDIV FVH+N+ KN+RQPYAVSK AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFG   RGGRMFAPTK WRRWHR++N  QKRY           P+L+M++GH+IE +PE+PLVV D  E  +KT  A+ +LK++ A+ D +K   SQ +R GKGKMRNRR I R+GP  +Y+ E   ++KAFRNI
Sbjct:    1 ACARPLISVYSEKGETS---GKNVTMPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSKLAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAVCSALAASALPALIMSKGHRIEEIPEVPLVVEDKVESYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCVIYN-ENNGIIKAFRNI 223

[Close]

BLAST of CF417341 vs. ExPASy Swiss-Prot
Match: RL4_RAT (60S ribosomal protein L4 OS=Rattus norvegicus GN=Rpl4 PE=1 SV=3)

HSP 1 Score: 271.166 bits (692), Expect = 3.659e-72
Identity = 134/227 (59.03%), Postives = 167/227 (73.57%), Query Frame = 1

Query:    1 AAARPLVTVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGKCGRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAECVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLXVYSAEGAKLVKAFRNI 681
            A ARPL++V S +G+    +   V LP V KA IRPDIV FVH+N+ KN+RQPYAVS+ AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFG   RGGRMFAPTK WRRWHR++N  QKRY           P+LVM++GH +E VPE+PLVV D  E  +KT  A+++LK++ A+ D +K   SQ +R GKGKMRNRR I R+GP  +Y+ +   ++KAFRNI
Sbjct:    2 ACARPLISVYSEKGE---SSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALAASALPALVMSKGHCVEEVPELPLVVEDKVESYKKTKEAVQLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNEDNG-IIKAFRNI 224

[Close]

BLAST of CF417341 vs. ExPASy Swiss-Prot
Match: RL4_MACFA (60S ribosomal protein L4 OS=Macaca fascicularis GN=RPL4 PE=2 SV=1)

HSP 1 Score: 270.781 bits (691), Expect = 4.779e-72
Identity = 135/227 (59.47%), Postives = 166/227 (73.13%), Query Frame = 1

Query:    1 AAARPLVTVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGKCGRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAECVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLXVYSAEGAKLVKAFRNI 681
            A ARPL++V S +G+    +   V LP V KA IRPDIV FVH+N+ KN+RQPYAVS+ AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFG   RGGRMFAPTK WRRWHR++N  QKRY           P+LVM++GH IE VPE+PLVV D  E  +KT  A+ +LK++ A+ D +K   SQ +R GKGKMRNRR I R+GP  +Y+ +   ++KAFRNI
Sbjct:    2 ACARPLISVYSEKGE---SSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALAASALPALVMSKGHSIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNEDNG-IIKAFRNI 224

The following BLAST results are available for this feature:

BLAST of CF417341 vs. ExPASy Swiss-Prot

BLAST of CF417341 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69


Match Name	E-value	Identity	Description
RL4_PRUAR	3.503e-107	86.34	60S ribosomal protein L4 OS=Prunus armeniaca GN=RP...	[more]
RL4A_ARATH	1.684e-101	80.18	60S ribosomal protein L4-1 OS=Arabidopsis thaliana...	[more]
RL4B_ARATH	3.751e-101	80.18	60S ribosomal protein L4-2 OS=Arabidopsis thaliana...	[more]
RL4_MOUSE	1.258e-72	59.47	60S ribosomal protein L4 OS=Mus musculus GN=Rpl4 P...	[more]
RL4A_XENLA	2.145e-72	59.47	60S ribosomal protein L4-A OS=Xenopus laevis GN=rp...	[more]
RL4_HUMAN	2.801e-72	59.47	60S ribosomal protein L4 OS=Homo sapiens GN=RPL4 P...	[more]
RL4_BOVIN	2.801e-72	59.47	60S ribosomal protein L4 OS=Bos taurus GN=RPL4 PE=...	[more]
RL4B_XENLA	2.801e-72	59.03	60S ribosomal protein L4-B (Fragment) OS=Xenopus l...	[more]
RL4_RAT	3.659e-72	59.03	60S ribosomal protein L4 OS=Rattus norvegicus GN=R...	[more]
RL4_MACFA	4.779e-72	59.47	60S ribosomal protein L4 OS=Macaca fascicularis GN...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_115000-271 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_B08 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF417341 ID=CF417341; Name=CF417341; organism=Citrus sinensis; type=EST; length=683bp
GCCGCTGCCCGTCCTCTTGTCACCGTCCAGTCTTTGGAAGGTGACATGGC
CACCGACGCAAGCTCCACCGTCCCCTTGCCCGACGTCATGAAGGCCTCTA
TCCGACCCGACATCGTGGGCTTCGTTCACTCTAACATCTCCAAGAACAGC
CGCCAGCCTTACGCCGTTTCCAAGAAGGCAGGGCACCAGACCTCCGCCGA
ATCATGGGGTACCGGTCGCGCCGTATCCCGTATCCCCCGAGTTCCCGGAG
GCGGTACCCACCGTGCCGGCCAGGGAGCCTTCGGTAAATGTGGTCGCGGT
GGTCGCATGTTCGCTCCCACAAAGATCTGGCGCCGATGGCACCGTAAGAT
CAACGTCAATCAAAAGCGATACGCCATCGTTTCCGCCATTGCCGCCTCCG
CTGTCCCCTCACTTGTGATGGCCCGTGGTCACAAGATCGAGACTGTTCCG
GAAATGCCCCTGGTCGTCAGTGATTCCGCCGAATGTGTTGAGAAAACATC
AGCTGCTCTTAAAGTTCTGAAGCAGATCGGTGCATATGCTGACGCCGAGA
AGGCGAAGGACAGCCAGGGGATTCGCCCTGGAAAGGGTAAAATGAGAAAT
AGGCGTTACATTTCTCGCAAGGGCCCGCTTGNTGTGTACTCAGCCGAGGG
TGCTAAGCTTGTCAAGGCTTTTAGGAACATTCC