CF417344

Overview
NameCF417344
Unique NameCF417344
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12918 contig Csv1_Contig12918:236..938. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417344 vs. ExPASy Swiss-Prot
Match: DRP3A_ARATH (Dynamin-related protein 3A OS=Arabidopsis thaliana GN=DRP3A PE=1 SV=2)

HSP 1 Score: 377.481 bits (968), Expect = 3.879e-104
Identity = 184/219 (84.02%), Postives = 207/219 (94.52%), Query Frame = 1
Query:    1 ISSALVSVAKEHASYGEITESKAGQGALLLNILSKYSEAFSSMVEGKNEEMSTSELSGGARIHYIFQSIFVKSLEEVDPCEDLTDDDIRTAIQNATGPKSALFVPDVPFEVLIRRQIARLLDPSLQCARFIYDELMKISHHCLVNELQRFPVLRKRMDEVIGNFLREGLEPSETMIGHIIEMEMDYINTSHPNFIGGSKAVEIALQQIKSSKXPLPITR 657
            IS+ALV+ AKEH SYGE+TES+AGQGALLLN LSKY EA+SS++EGK+EEMSTSELSGGARIHYIFQSIFVKSLEEVDPCEDLTDDDIRTAIQNATGP+SALFVPDVPFEVL+RRQI+RLLDPSLQCARFI++EL+KISH C++NELQRFPVLRKRMDEVIG+FLREGLEPSE MIG II+MEMDYINTSHPNFIGG+KAVE A+ Q+KSS+ P P+ R
Sbjct:  336 ISNALVATAKEHQSYGELTESRAGQGALLLNFLSKYCEAYSSLLEGKSEEMSTSELSGGARIHYIFQSIFVKSLEEVDPCEDLTDDDIRTAIQNATGPRSALFVPDVPFEVLVRRQISRLLDPSLQCARFIFEELIKISHRCMMNELQRFPVLRKRMDEVIGDFLREGLEPSEAMIGDIIDMEMDYINTSHPNFIGGTKAVEAAMHQVKSSRIPHPVAR 554          
BLAST of CF417344 vs. ExPASy Swiss-Prot
Match: DRP3B_ARATH (Dynamin-related protein 3B OS=Arabidopsis thaliana GN=DRP3B PE=1 SV=2)

HSP 1 Score: 350.517 bits (898), Expect = 5.078e-96
Identity = 171/219 (78.08%), Postives = 200/219 (91.32%), Query Frame = 1
Query:    1 ISSALVSVAKEHASYGEITESKAGQGALLLNILSKYSEAFSSMVEGKNEEMSTSELSGGARIHYIFQSIFVKSLEEVDPCEDLTDDDIRTAIQNATGPKSALFVPDVPFEVLIRRQIARLLDPSLQCARFIYDELMKISHHCLVNELQRFPVLRKRMDEVIGNFLREGLEPSETMIGHIIEMEMDYINTSHPNFIGGSKAVEIALQQIKSSKXPLPITR 657
            I++AL + AKE+ SYG+ITES+ GQGALLL+ ++KY EA+SS +EGK++EMSTSELSGGARI YIFQS+FVKSLEEVDPCEDLT DDIRTAIQNATGP+SALFVPDVPFEVL+RRQI+RLLDPSLQCARFI+DEL+KISH C++ ELQRFPVL+KRMDEVIGNFLREGLEPS+ MI  +IEMEMDYINTSHPNFIGG+KAVE A+Q +KSS+ P P+ R
Sbjct:  321 INNALFATAKEYESYGDITESRGGQGALLLSFITKYCEAYSSTLEGKSKEMSTSELSGGARILYIFQSVFVKSLEEVDPCEDLTADDIRTAIQNATGPRSALFVPDVPFEVLVRRQISRLLDPSLQCARFIFDELVKISHQCMMKELQRFPVLQKRMDEVIGNFLREGLEPSQAMIRDLIEMEMDYINTSHPNFIGGTKAVEQAMQTVKSSRIPHPVAR 539          
BLAST of CF417344 vs. ExPASy Swiss-Prot
Match: DYNA_DICDI (Dynamin-A OS=Dictyostelium discoideum GN=dymA PE=1 SV=2)

HSP 1 Score: 183.726 bits (465), Expect = 8.221e-46
Identity = 88/203 (43.35%), Postives = 138/203 (67.98%), Query Frame = 1
Query:    1 ISSALVSVAKEHASYGE-ITESKAGQGALLLNILSKYSEAFSSMVEGKNEEMSTSELSGGARIHYIFQSIFVKSLEEVDPCEDLTDDDIRTAIQNATGPKSALFVPDVPFEVLIRRQIARLLDPSLQCARFIYDELMKISHHCLVNELQRFPVLRKRMDEVIGNFLREGLEPSETMIGHIIEMEMDYINTSHPNFIGGSKAVE 606
            +S  L  V  E ++YG+ + ++K  QGALLL I++ +S  F   ++GK  ++S +EL GGARI YIF  I+   +  +DP E ++ +DIRT ++NATGP++ALF+P++ FE+L+++Q+ RL +PS QC  ++YDEL +I       EL RF  L+ R+ EV+ N L++   P++TMI H+I++E  +INTSHP+F+GG    E
Sbjct:  302 VSKMLSDVQGELSTYGDPLYDTKNSQGALLLQIITIFSSNFKDAIDGKLTDLSNNELYGGARISYIFNEIYSHCVNNIDPLEGISLNDIRTTMRNATGPRAALFIPEISFELLVKKQVVRLEEPSAQCVEYVYDELQRIVSQLEAKELSRFINLKARVIEVVNNLLQKHKVPTKTMIEHLIKIETAFINTSHPDFVGGEGIFE 504          
BLAST of CF417344 vs. ExPASy Swiss-Prot
Match: DNM1_YEAST (Dynamin-related protein DNM1 OS=Saccharomyces cerevisiae GN=DNM1 PE=1 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 4.988e-43
Identity = 80/203 (39.41%), Postives = 138/203 (67.98%), Query Frame = 1
Query:    1 ISSALVSVAKEHASYGEI-TESKAGQGALLLNILSKYSEAFSSMVEGKNEEMSTSELSGGARIHYIFQSIFVKSLEEVDPCEDLTDDDIRTAIQNATGPKSALFVPDVPFEVLIRRQIARLLDPSLQCARFIYDELMKISHHCLVNELQRFPVLRKRMDEVIGNFLREGLEPSETMIGHIIEMEMDYINTSHPNFIGGSKAVE 606
            +++ +    +E A YG +   +   + +L+L +++K+S  F S ++G + +++T EL GGARI+YI+ ++F  SL+ +DP  +L+  D+RTAI+N+TGP+  LFVP++ F++L++ QI  LL+PS +C   +Y+ELMKI H C   EL R+P L+  + EVI   LRE L+P+ + +  +I++   YINT+HPNF+  ++A++
Sbjct:  339 LNTLISQTEQELARYGGVGATTNESRASLVLQLMNKFSTNFISSIDGTSSDINTKELCGGARIYYIYNNVFGNSLKSIDPTSNLSVLDVRTAIRNSTGPRPTLFVPELAFDLLVKPQIKLLLEPSQRCVELVYEELMKICHKCGSAELARYPKLKSMLIEVISELLRERLQPTRSYVESLIDIHRAYINTNHPNFLSATEAMD 541          
BLAST of CF417344 vs. ExPASy Swiss-Prot
Match: VPS1_SCHPO (Vacuolar protein sorting-associated protein 1 OS=Schizosaccharomyces pombe GN=vps1 PE=2 SV=2)

HSP 1 Score: 161.77 bits (408), Expect = 3.346e-39
Identity = 78/213 (36.62%), Postives = 143/213 (67.14%), Query Frame = 1
Query:   19 SVAKEHASYGEITESKAGQGA-LLLNILSKYSEAFSSMVEGKNEEMSTSELSGGARIHYIFQSIFVKSLEEVDPCEDLTDDDIRTAIQNATGPKSALFVPDVPFEVLIRRQIARLLDPSLQCARFIYDELMKISHHCLVNEL-QRFPVLRKRMDEVIGNFLREGLEPSETMIGHIIEMEMDYINTSHPNFIGGSKAVEIALQQIKSSKXPLPI 651
            ++AK  A    + ++  G  + ++LN+++ +   + ++V+G++EE+S +ELSGGARI ++F  IF   ++ +DP +++ D DIRT + N++GP  +LF+    FEV++++QI RL DPSL+C   IYDEL++I +  L   + +R+P+L+    +V+  F R+ ++P+ T++  ++ ME  YINT HP+F+ G +A  +A+ Q ++SK P+P+
Sbjct:  320 ALAKYQAELHSLGDTPVGDNSSIVLNLITDFCNEYRTVVDGRSEELSATELSGGARIAFVFHEIFSNGIQAIDPFDEVKDSDIRTILYNSSGPSPSLFMGTAAFEVIVKQQIKRLEDPSLKCVSLIYDELVRILNQLLQRPIFKRYPLLKDEFYKVVIGFFRKCMQPTNTLVMDMVAMEGSYINTVHPDFLSGHQA--MAIVQSQNSK-PIPV 529          
BLAST of CF417344 vs. ExPASy Swiss-Prot
Match: DNM1L_DANRE (Dynamin-1-like protein OS=Danio rerio GN=dnm1l PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.169e-38
Identity = 80/185 (43.24%), Postives = 122/185 (65.95%), Query Frame = 1
Query:   37 ASYGEITESKAGQGALLLNILSKYSEAFSSMVEGKNEEMSTSELSGGARIHYIFQSIFVKSLEEVDPCEDLTDDDIRTAIQNATGPKSALFVPDVPFEVLIRRQIARLLDPSLQCARFIYDELMKISHHC---LVNELQRFPVLRKRMDEVIGNFLREGLEPSETMIGHIIEMEMDYINTSHPNF 582
            +SYGE  E  +   A LL +++K++  + + +EG  + + T+EL GGARI YIF   F ++LE VDP   LT  D+ TAI+NATGP+ ALFVP+V FE+L++RQ+ RL +PSL+C   +++E+ +I  HC      EL RFP L   + EV+ + LR+ L  +  M+ +++ +E+ YINT HP+F
Sbjct:  319 SSYGEPVEDMS---ATLLQLITKFATEYCNTIEGTAKYIETAELCGGARICYIFHETFGRTLESVDPLGGLTTIDVLTAIRNATGPRPALFVPEVSFELLVKRQVKRLEEPSLRCVELVHEEMQRIIQHCSNYSTQELLRFPKLHDAIVEVVTSLLRKRLPVTNEMVHNLVAIELAYINTKHPDF 500          
BLAST of CF417344 vs. ExPASy Swiss-Prot
Match: DNM1L_RAT (Dynamin-1-like protein OS=Rattus norvegicus GN=Dnm1l PE=1 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.699e-38
Identity = 82/184 (44.57%), Postives = 120/184 (65.22%), Query Frame = 1
Query:   40 SYGEITESKAGQGALLLNILSKYSEAFSSMVEGKNEEMSTSELSGGARIHYIFQSIFVKSLEEVDPCEDLTDDDIRTAIQNATGPKSALFVPDVPFEVLIRRQIARLLDPSLQCARFIYDELMKISHHC---LVNELQRFPVLRKRMDEVIGNFLREGLEPSETMIGHIIEMEMDYINTSHPNF 582
            SYGE  + K+   A LL +++K++  + + +EG  + + TSEL GGARI YIF   F ++LE VDP   L   DI TAI+NATGP+ ALFVP+V FE+L++RQI RL +PSL+C   +++E+ +I  HC      EL RFP L   + EV+   LR+ L  +  M+ +++ +E+ YINT HP+F
Sbjct:  334 SYGEPVDDKS---ATLLQLITKFATEYCNTIEGTAKYIETSELCGGARICYIFHETFGRTLESVDPLGGLNTIDILTAIRNATGPRPALFVPEVSFELLVKRQIKRLEEPSLRCVELVHEEMQRIIQHCSNYSTQELLRFPKLHDAIVEVVTCLLRKRLPVTNEMVHNLVAIELAYINTKHPDF 514          
BLAST of CF417344 vs. ExPASy Swiss-Prot
Match: DNM1L_MOUSE (Dynamin-1-like protein OS=Mus musculus GN=Dnm1l PE=1 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 3.699e-38
Identity = 82/184 (44.57%), Postives = 120/184 (65.22%), Query Frame = 1
Query:   40 SYGEITESKAGQGALLLNILSKYSEAFSSMVEGKNEEMSTSELSGGARIHYIFQSIFVKSLEEVDPCEDLTDDDIRTAIQNATGPKSALFVPDVPFEVLIRRQIARLLDPSLQCARFIYDELMKISHHC---LVNELQRFPVLRKRMDEVIGNFLREGLEPSETMIGHIIEMEMDYINTSHPNF 582
            SYGE  + K+   A LL +++K++  + + +EG  + + TSEL GGARI YIF   F ++LE VDP   L   DI TAI+NATGP+ ALFVP+V FE+L++RQI RL +PSL+C   +++E+ +I  HC      EL RFP L   + EV+   LR+ L  +  M+ +++ +E+ YINT HP+F
Sbjct:  327 SYGEPVDDKS---ATLLQLITKFATEYCNTIEGTAKYIETSELCGGARICYIFHETFGRTLESVDPLGGLNTIDILTAIRNATGPRPALFVPEVSFELLVKRQIKRLEEPSLRCVELVHEEMQRIIQHCSNYSTQELLRFPKLHDAIVEVVTCLLRKRLPVTNEMVHNLVAIELAYINTKHPDF 507          
BLAST of CF417344 vs. ExPASy Swiss-Prot
Match: DNM1L_HUMAN (Dynamin-1-like protein OS=Homo sapiens GN=DNM1L PE=1 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 3.699e-38
Identity = 82/184 (44.57%), Postives = 120/184 (65.22%), Query Frame = 1
Query:   40 SYGEITESKAGQGALLLNILSKYSEAFSSMVEGKNEEMSTSELSGGARIHYIFQSIFVKSLEEVDPCEDLTDDDIRTAIQNATGPKSALFVPDVPFEVLIRRQIARLLDPSLQCARFIYDELMKISHHC---LVNELQRFPVLRKRMDEVIGNFLREGLEPSETMIGHIIEMEMDYINTSHPNF 582
            SYGE  + K+   A LL +++K++  + + +EG  + + TSEL GGARI YIF   F ++LE VDP   L   DI TAI+NATGP+ ALFVP+V FE+L++RQI RL +PSL+C   +++E+ +I  HC      EL RFP L   + EV+   LR+ L  +  M+ +++ +E+ YINT HP+F
Sbjct:  321 SYGEPVDDKS---ATLLQLITKFATEYCNTIEGTAKYIETSELCGGARICYIFHETFGRTLESVDPLGGLNTIDILTAIRNATGPRPALFVPEVSFELLVKRQIKRLEEPSLRCVELVHEEMQRIIQHCSNYSTQELLRFPKLHDAIVEVVTCLLRKRLPVTNEMVHNLVAIELAYINTKHPDF 501          
BLAST of CF417344 vs. ExPASy Swiss-Prot
Match: DNM1L_BOVIN (Dynamin-1-like protein OS=Bos taurus GN=DNM1L PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.699e-38
Identity = 82/184 (44.57%), Postives = 120/184 (65.22%), Query Frame = 1
Query:   40 SYGEITESKAGQGALLLNILSKYSEAFSSMVEGKNEEMSTSELSGGARIHYIFQSIFVKSLEEVDPCEDLTDDDIRTAIQNATGPKSALFVPDVPFEVLIRRQIARLLDPSLQCARFIYDELMKISHHC---LVNELQRFPVLRKRMDEVIGNFLREGLEPSETMIGHIIEMEMDYINTSHPNF 582
            SYGE  + K+   A LL +++K++  + + +EG  + + TSEL GGARI YIF   F ++LE VDP   L   DI TAI+NATGP+ ALFVP+V FE+L++RQI RL +PSL+C   +++E+ +I  HC      EL RFP L   + EV+   LR+ L  +  M+ +++ +E+ YINT HP+F
Sbjct:  334 SYGEPVDDKS---ATLLQLITKFATEYCNTIEGTAKYIETSELCGGARICYIFHETFGRTLESVDPLGGLNTIDILTAIRNATGPRPALFVPEVSFELLVKRQIKRLEEPSLRCVELVHEEMQRIIQHCSNYSTQELLRFPKLHDAIVEVVTCLLRKRLPVTNEMVHNLVAIELAYINTKHPDF 514          
The following BLAST results are available for this feature:
BLAST of CF417344 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
DRP3A_ARATH3.879e-10484.02Dynamin-related protein 3A OS=Arabidopsis thaliana... [more]
DRP3B_ARATH5.078e-9678.08Dynamin-related protein 3B OS=Arabidopsis thaliana... [more]
DYNA_DICDI8.221e-4643.35Dynamin-A OS=Dictyostelium discoideum GN=dymA PE=1... [more]
DNM1_YEAST4.988e-4339.41Dynamin-related protein DNM1 OS=Saccharomyces cere... [more]
VPS1_SCHPO3.346e-3936.62Vacuolar protein sorting-associated protein 1 OS=S... [more]
DNM1L_DANRE2.169e-3843.24Dynamin-1-like protein OS=Danio rerio GN=dnm1l PE=... [more]
DNM1L_RAT3.699e-3844.57Dynamin-1-like protein OS=Rattus norvegicus GN=Dnm... [more]
DNM1L_MOUSE3.699e-3844.57Dynamin-1-like protein OS=Mus musculus GN=Dnm1l PE... [more]
DNM1L_HUMAN3.699e-3844.57Dynamin-1-like protein OS=Homo sapiens GN=DNM1L PE... [more]
DNM1L_BOVIN3.699e-3844.57Dynamin-1-like protein OS=Bos taurus GN=DNM1L PE=2... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-274 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_B11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417344 ID=CF417344; Name=CF417344; organism=Citrus sinensis; type=EST; length=705bp
ATTAGCTCTGCATTGGTTTCTGTTGCAAAGGAGCATGCAAGCTACGGGGA
AATCACAGAATCAAAGGCTGGTCAGGGAGCTCTACTCCTGAATATTCTTT
CTAAATACTCCGAAGCATTTTCTTCAATGGTGGAGGGAAAGAATGAAGAA
ATGTCAACATCTGAGCTTTCTGGCGGGGCACGAATTCACTATATTTTTCA
GTCAATCTTTGTGAAGAGTTTAGAGGAGGTTGATCCCTGTGAGGACTTGA
CTGACGATGACATTCGAACTGCTATTCAGAATGCAACTGGTCCCAAATCT
GCACTATTTGTACCAGACGTGCCGTTCGAAGTTCTTATTCGAAGGCAAAT
TGCTCGCTTGTTGGATCCTAGTCTTCAGTGTGCGAGGTTCATATATGATG
AGTTAATGAAGATTAGCCATCACTGTCTTGTGAATGAACTGCAGCGCTTT
CCTGTTCTTAGAAAGCGTATGGATGAGGTCATCGGGAACTTTCTGCGAGA
AGGCCTTGAGCCCTCCGAGACAATGATTGGACATATCATTGAAATGGAGA
TGGACTATATAAACACTTCCCATCCAAATTTTATTGGTGGAAGTAAAGCT
GTGGAAATTGCACTGCAGCAGATCAAGTCTTCTAAGGNTCCTTTGCCCAT
AACCAGGGCATAANGGATGGTGTGGAACCCGATAAGGCACCAAGCTCCGA
AAAAA
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