CF417349

Overview
NameCF417349
Unique NameCF417349
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length716
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417349 vs. ExPASy Swiss-Prot
Match: HELC1_DICDI (Activating signal cointegrator 1 complex subunit 3 OS=Dictyostelium discoideum GN=ascc3 PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.862e-29
Identity = 69/174 (39.66%), Postives = 103/174 (59.20%), Query Frame = 2
Query:    2 DTSLEVFLHILSGASEYDELPVRHNEDNHNEALSQRVRFAVDNNRLDDPHVKANLLFQAHFSRLDLPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMHLLQMVMQGLWFEQDSALWMFPCMNNDLLGTL-------RARGISTVQQLLDIPKENLQTVIGNFPVS 502
            D+ ++  L +LS A+EY E PVRHNE+  N+ L++ +   + N   +D H K +LL QAHF R  LPI+D+ TD KS LDQ IRI+QAMID+    G+ +++I  + LLQM++QG W + DS+L   P +N D    L           IS +  +L IP++ +   + N  +S
Sbjct: 1837 DSDIKTLLRVLSDAAEYSEFPVRHNEEILNQELNENLPIKIGN--YEDSHTKVHLLLQAHFQRCPLPITDFTTDTKSALDQGIRILQAMIDVSFEYGYFATAIQVIRLLQMLVQGRW-DYDSSLMTLPHINKDFADFLSSNLILSNGEQISNLSDMLKIPRDKIHLSLTNIGLS 2007          
BLAST of CF417349 vs. ExPASy Swiss-Prot
Match: HELC1_HUMAN (Activating signal cointegrator 1 complex subunit 3 OS=Homo sapiens GN=ASCC3 PE=1 SV=3)

HSP 1 Score: 127.487 bits (319), Expect = 7.077e-29
Identity = 69/162 (42.59%), Postives = 99/162 (61.11%), Query Frame = 2
Query:    2 DTSLEVFLHILSGASEYDELPVRHNEDNHNEALSQRVRFAVDNNRLDDPHVKANLLFQAHFSRLDLPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMHLLQMVMQGLWFEQDSALWMFPCMNNDLLGTLR----------ARGISTVQQLLDI 457
            + S E  L ILS A EY +LPVRHNED+ N  L++ +    + +  D PH KA+LL QAH SR  LP  DY TD K+VLDQ++R+ QAM+D+ AN GWL + +   +L+QMV+QG W  +DS+L   P + N  L   +          ARG ++++ L ++
Sbjct: 1839 ECSTEELLSILSDAEEYTDLPVRHNEDHMNSELAKCLPIESNPHSFDSPHTKAHLLLQAHLSRAMLPCPDYDTDTKTVLDQALRVCQAMLDVAANQGWLVTVLNITNLIQMVIQGRWL-KDSSLLTLPNIENHHLHLFKKWKPIMKGPHARGRTSIESLPEL 1999          
BLAST of CF417349 vs. ExPASy Swiss-Prot
Match: U520_HUMAN (U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Homo sapiens GN=SNRNP200 PE=1 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 1.927e-26
Identity = 60/182 (32.97%), Postives = 111/182 (60.99%), Query Frame = 2
Query:    5 TSLEVFLHILSGASEYDELPVRHNEDNHNEALSQRVRFAVDNNRLDDPHVKANLLFQAHFSRLDLPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMHLLQMVMQGLWFEQDSALWMFPCMNNDLLGTLRARGISTVQQLLDIPKE--NLQTVIGNFPVSRLHQDLQRFPRIQV 544
            T +   + I+S A+EY+ +P+RH+EDN    L+Q+V   ++N + +DPHVK NLL QAH SR+ L  ++  +D + +L ++IR+IQA +D+ +++GWLS ++  M L QMV Q +W  +DS L   P   ++ +     +G+ +V  ++++  E  N    + +  ++ + +   R+P I++
Sbjct: 1840 TKVRGLIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLS-AELQSDTEEILSKAIRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMW-SKDSYLKQLPHFTSEHIKRCTDKGVESVFDIMEMEDEERNALLQLTDSQIADVARFCNRYPNIEL 2019          
BLAST of CF417349 vs. ExPASy Swiss-Prot
Match: SLH1_YEAST (Antiviral helicase SLH1 OS=Saccharomyces cerevisiae GN=SLH1 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.077e-24
Identity = 58/121 (47.93%), Postives = 80/121 (66.12%), Query Frame = 2
Query:   23 LHILSGASEYDELPVRHNEDNHNEALSQRVRFAVDNNRLD-------DPHVKANLLFQAHFSRLDLPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMHLLQMVMQGLWFEQD 364
            L  LS A EY+ELPVR  E   NE +SQ+ R++V++   D       DPHVK  LL QAH SR+DLPI+DY+ D  SVLDQS+RI+QA ID+ +  G+  + +T + ++Q + QG W+E D
Sbjct: 1660 LRWLSLAVEYNELPVRGGEIIMNEEMSQQSRYSVESTFTDEFELPMWDPHVKTFLLLQAHLSRVDLPIADYIQDTVSVLDQSLRILQAYIDVASELGYFHTVLTMIKMMQCIKQGYWYEDD 1780          
BLAST of CF417349 vs. ExPASy Swiss-Prot
Match: U520_DROME (Putative U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Drosophila melanogaster GN=CG5931 PE=2 SV=4)

HSP 1 Score: 104.375 bits (259), Expect = 6.416e-22
Identity = 60/187 (32.09%), Postives = 108/187 (57.75%), Query Frame = 2
Query:    5 TSLEVFLHILSGASEYDELPVRHNEDNHNEALSQRV--RFAVDNN---RLDDPHVKANLLFQAHFSRLDLPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMHLLQMVMQGLWFEQDSALWMFPCMNNDLLGTLRARGISTVQQLLDIPKENLQTV--IGNFPVSRLHQDLQRFPRIQV 544
            T +   L I+S A+EY+++ VRH+E+     LSQR+  +    N    + +DPH+K NLL QAH SRL L   +   D + +L ++IR+IQA +D+ +++GWLS ++  M L QMV Q +W  +DS L   P  + +++     + I TV  ++++  E+   +  + +  ++ + +   R+P I++
Sbjct: 1839 TKVRGLLEIISSAAEYEDVVVRHHEEQVLRTLSQRLPNKLTGPNETAPKFNDPHIKTNLLLQAHLSRLQLG-PELQGDTEQILSKAIRLIQACVDVLSSNGWLSPAVAAMELAQMVTQAMW-SKDSYLKQLPHFSPEIVKRCTEKKIETVFDIMELEDEDRTRLLQLSDLQMADVARFCNRYPNIEL 2023          
BLAST of CF417349 vs. ExPASy Swiss-Prot
Match: U520_CAEEL (Putative U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Caenorhabditis elegans GN=Y46G5A.4 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.639e-19
Identity = 53/187 (28.34%), Postives = 104/187 (55.61%), Query Frame = 2
Query:    5 TSLEVFLHILSGASEYDELPVRHNEDNHNEALSQRVRFAVDNNRLDDPHVKANLLFQAHFSRLDLPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMHLLQMVMQGLWFEQDSALWMFPCMNNDLLGTLRARGISTVQQLLDIPKENLQTVI--GNFPVSRLHQDLQRFPRIQVKLRLQ 559
            T     + I+S +SE+  +P+RH ED     L++R+   + N +  DPHVK NLL  AH SR+ L  ++   D + ++ ++ R++QA +D+ +++GWLS +I  M L QM+ Q + +  +  L   P  +  LL   +A+ +++V +LL++  ++   ++      ++ + +    +P I+V   L+
Sbjct: 1839 TKTRALIEIISASSEFGNVPMRHKEDVILRQLAERLPGQLKNQKFTDPHVKVNLLIHAHLSRVKL-TAELNKDTELIVLRACRLVQACVDVLSSNGWLSPAIHAMELSQMLTQAM-YSNEPYLKQLPHCSAALLERAKAKEVTSVFELLELENDDRSDILQMEGAELADVARFCNHYPSIEVATELE 2023          
BLAST of CF417349 vs. ExPASy Swiss-Prot
Match: HELCL_DICDI (Activating signal cointegrator 1 complex subunit 3-like OS=Dictyostelium discoideum GN=ascc3l PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.639e-19
Identity = 52/181 (28.73%), Postives = 95/181 (52.49%), Query Frame = 2
Query:   23 LHILSGASEYDELPVRHNEDNHNEALSQRVRFAVDNNRLDDPHVKANLLFQAHFSRLDLPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMHLLQMVMQGLWFEQDSALWMFPCMNNDLLGTLRARGISTVQQLLDI-PKENLQTV-IGNFPVSRLHQDLQRFPRIQVKLRLQ 559
            + I+S A E++ LP+RH ED     L+  +   +D     +   K N+L Q HFSR  +  +D   D K +L+ + R++QA++D+ +++ WL  +I  M L QM+ Q +W + DS     P MN   +  + ++GI +V  L+ +     +Q + +     + L Q   ++P I +  ++Q
Sbjct: 1926 MDIISNAPEFNSLPIRHREDQILMKLASHLPQKIDKPNYQEISTKVNVLLQCHFSRESIS-ADLYQDQKFILENATRLLQAIVDVISSNSWLQPAIAAMELSQMITQAMW-DSDSVFKQLPHMNKRRIDAITSQGIESVFDLMSLDDNSRIQLLDLSQQESNDLVQSFMKYPDIDISYQVQ 2104          
BLAST of CF417349 vs. ExPASy Swiss-Prot
Match: BRR2_SCHPO (Pre-mRNA-splicing factor brr2 OS=Schizosaccharomyces pombe GN=brr2 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.479e-18
Identity = 54/187 (28.88%), Postives = 99/187 (52.94%), Query Frame = 2
Query:    5 TSLEVFLHILSGASEYDELPVRHNEDNHNEALSQRVRFAVDNNRLDDPHVKANLLFQAHFSRLDLPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMHLLQMVMQGLWFEQDSALWMFPCMNNDLLGTLRARGISTVQQLLDIPKENLQTVI--GNFPVSRLHQDLQRFPRIQVKLRLQ 559
            T ++  L I++ A+EY++LP+R  ED   E +  R+   + N   +DPH K+ +L  AHFSR +LP    V D K +L +   ++ A +D  ++ G L + I  M + QMV Q LW ++DS L   P  ++ L+      G+  V  ++D+  E    ++   N  +++  + + ++P I +   ++
Sbjct: 1876 TKMKGLLEIVTSAAEYEQLPIRKYEDIVLERIHSRLPVRLSNPNYEDPHTKSFILLAAHFSRFELP-PGLVIDQKFILTRVHNLLGACVDTLSSEGHLIACIRPMEMSQMVTQALW-DRDSPLKQIPYFDDALIERCNKEGVHDVFDIIDLDDEKRTELLHMDNAHLAKCAEFINKYPDIDIDFEIE 2060          
BLAST of CF417349 vs. ExPASy Swiss-Prot
Match: MUG81_SCHPO (Putative helicase mug81 OS=Schizosaccharomyces pombe GN=mug81 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.295e-18
Identity = 48/119 (40.34%), Postives = 76/119 (63.87%), Query Frame = 2
Query:    2 DTSLEVFLHILSGASEYDELPVRHNEDNHNEALSQRVRFAVD--NNRLDDPHVKANLLFQAHFSRLDLPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMHLLQMVMQGLW 352
            +   ++ L +L+ ASE+D+L +RHNED  N  +++ ++++    N  + D HVKA +L QAH +RL LP+ DYVTD  +VLDQ IRIIQ+ ID+ A  G+    +  + L+Q + Q  +
Sbjct: 1645 NAEFDLALQLLAEASEFDDLAIRHNEDLINIEINKSLKYSAACLNLPMVDAHVKAFILTQAHMARLKLPVDDYVTDTSTVLDQVIRIIQSYIDVSAELGYSHVCLQYISLMQCLKQACY 1763          
BLAST of CF417349 vs. ExPASy Swiss-Prot
Match: BRR2_YEAST (Pre-mRNA-splicing helicase BRR2 OS=Saccharomyces cerevisiae GN=BRR2 PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.611e-15
Identity = 51/162 (31.48%), Postives = 95/162 (58.64%), Query Frame = 2
Query:    5 TSLEVFLHILSGASEYDELPVRHNEDNHNEALSQRV--RFAVDNNRLDDPHVKANLLFQAHFSRLDLPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMHLLQMVMQGLWFEQDSALWMFPCMNNDLLGTLRARGISTVQQLLDIPKENLQTVI 484
            ++L+  L++LS A E++ +P+R  +      LS+R+  RF  ++        K  LL QA+FSRL+LP+ D+  DLK +L++ + +I  ++DI + +G+L+++ T M L QM++QG+W + D+ L   P  NN +L   +   + TV  ++ +  E    ++
Sbjct: 1874 STLKNMLYVLSTAVEFESVPLRKGDRALLVKLSKRLPLRFP-EHTSSGSVSFKVFLLLQAYFSRLELPV-DFQNDLKDILEKVVPLINVVVDILSANGYLNAT-TAMDLAQMLIQGVW-DVDNPLRQIPHFNNKILEKCKEINVETVYDIMALEDEERDEIL 2031          
The following BLAST results are available for this feature:
BLAST of CF417349 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
HELC1_DICDI1.862e-2939.66Activating signal cointegrator 1 complex subunit 3... [more]
HELC1_HUMAN7.077e-2942.59Activating signal cointegrator 1 complex subunit 3... [more]
U520_HUMAN1.927e-2632.97U5 small nuclear ribonucleoprotein 200 kDa helicas... [more]
SLH1_YEAST3.077e-2447.93Antiviral helicase SLH1 OS=Saccharomyces cerevisia... [more]
U520_DROME6.416e-2232.09Putative U5 small nuclear ribonucleoprotein 200 kD... [more]
U520_CAEEL6.639e-1928.34Putative U5 small nuclear ribonucleoprotein 200 kD... [more]
HELCL_DICDI6.639e-1928.73Activating signal cointegrator 1 complex subunit 3... [more]
BRR2_SCHPO1.479e-1828.88Pre-mRNA-splicing factor brr2 OS=Schizosaccharomyc... [more]
MUG81_SCHPO3.295e-1840.34Putative helicase mug81 OS=Schizosaccharomyces pom... [more]
BRR2_YEAST2.611e-1531.48Pre-mRNA-splicing helicase BRR2 OS=Saccharomyces c... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-279 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_C05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417349 ID=CF417349; Name=CF417349; organism=Citrus sinensis; type=EST; length=716bp
AGATACATCTCTAGAGGTGTTCTTGCATATTCTTTCTGGTGCTTCTGAAT
ATGATGAGCTTCCTGTGCGGCATAATGAGGATAATCACAATGAAGCATTG
TCCCAGAGAGTTCGATTTGCGGTAGACAATAATCGCCTGGATGATCCACA
TGTCAAAGCAAATCTGCTATTTCAGGCACATTTCTCTCGGTTAGATTTAC
CTATCAGCGACTATGTCACTGACTTGAAGTCGGTGTTGGATCAAAGTATA
CGCATCATCCAGGCCATGATAGATATATGTGCTAACAGCGGGTGGCTTTC
AAGTTCAATCACTTGCATGCATCTTTTGCAAATGGTTATGCAGGGCCTAT
GGTTTGAACAAGATTCTGCGTTGTGGATGTTTCCATGCATGAACAATGAT
CTTTTAGGTACGCTAAGAGCAAGAGGAATTTCCACTGTGCAGCAACTCTT
GGATATTCCAAAGGAAAATTTGCAAACGGTGATTGGAAATTTCCCTGTTT
CAAGATTACATCAGGATCTGCAACGTTTCCCAAGAATTCAAGTCAAATTA
AGACTTCAGAGAAGGGGATATTGATGGTGAAAATTCACTAACTCTAAACA
TCAGAATGGATAAGATGAATTCATGGAAGAACACATCCAGGGCTTTTGCT
CTTCGGTTCCCGAAGATAAAAGATGAAGCTTGGGGGGTTGGTTCTTGGTA
ACCCCACACCTCAGAA
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