CF417349
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417349 vs. ExPASy Swiss-Prot
Match: HELC1_DICDI (Activating signal cointegrator 1 complex subunit 3 OS=Dictyostelium discoideum GN=ascc3 PE=3 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 1.862e-29 Identity = 69/174 (39.66%), Postives = 103/174 (59.20%), Query Frame = 2 Query: 2 DTSLEVFLHILSGASEYDELPVRHNEDNHNEALSQRVRFAVDNNRLDDPHVKANLLFQAHFSRLDLPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMHLLQMVMQGLWFEQDSALWMFPCMNNDLLGTL-------RARGISTVQQLLDIPKENLQTVIGNFPVS 502 D+ ++ L +LS A+EY E PVRHNE+ N+ L++ + + N +D H K +LL QAHF R LPI+D+ TD KS LDQ IRI+QAMID+ G+ +++I + LLQM++QG W + DS+L P +N D L IS + +L IP++ + + N +S Sbjct: 1837 DSDIKTLLRVLSDAAEYSEFPVRHNEEILNQELNENLPIKIGN--YEDSHTKVHLLLQAHFQRCPLPITDFTTDTKSALDQGIRILQAMIDVSFEYGYFATAIQVIRLLQMLVQGRW-DYDSSLMTLPHINKDFADFLSSNLILSNGEQISNLSDMLKIPRDKIHLSLTNIGLS 2007
BLAST of CF417349 vs. ExPASy Swiss-Prot
Match: HELC1_HUMAN (Activating signal cointegrator 1 complex subunit 3 OS=Homo sapiens GN=ASCC3 PE=1 SV=3) HSP 1 Score: 127.487 bits (319), Expect = 7.077e-29 Identity = 69/162 (42.59%), Postives = 99/162 (61.11%), Query Frame = 2 Query: 2 DTSLEVFLHILSGASEYDELPVRHNEDNHNEALSQRVRFAVDNNRLDDPHVKANLLFQAHFSRLDLPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMHLLQMVMQGLWFEQDSALWMFPCMNNDLLGTLR----------ARGISTVQQLLDI 457 + S E L ILS A EY +LPVRHNED+ N L++ + + + D PH KA+LL QAH SR LP DY TD K+VLDQ++R+ QAM+D+ AN GWL + + +L+QMV+QG W +DS+L P + N L + ARG ++++ L ++ Sbjct: 1839 ECSTEELLSILSDAEEYTDLPVRHNEDHMNSELAKCLPIESNPHSFDSPHTKAHLLLQAHLSRAMLPCPDYDTDTKTVLDQALRVCQAMLDVAANQGWLVTVLNITNLIQMVIQGRWL-KDSSLLTLPNIENHHLHLFKKWKPIMKGPHARGRTSIESLPEL 1999
BLAST of CF417349 vs. ExPASy Swiss-Prot
Match: U520_HUMAN (U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Homo sapiens GN=SNRNP200 PE=1 SV=2) HSP 1 Score: 119.398 bits (298), Expect = 1.927e-26 Identity = 60/182 (32.97%), Postives = 111/182 (60.99%), Query Frame = 2 Query: 5 TSLEVFLHILSGASEYDELPVRHNEDNHNEALSQRVRFAVDNNRLDDPHVKANLLFQAHFSRLDLPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMHLLQMVMQGLWFEQDSALWMFPCMNNDLLGTLRARGISTVQQLLDIPKE--NLQTVIGNFPVSRLHQDLQRFPRIQV 544 T + + I+S A+EY+ +P+RH+EDN L+Q+V ++N + +DPHVK NLL QAH SR+ L ++ +D + +L ++IR+IQA +D+ +++GWLS ++ M L QMV Q +W +DS L P ++ + +G+ +V ++++ E N + + ++ + + R+P I++ Sbjct: 1840 TKVRGLIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLS-AELQSDTEEILSKAIRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMW-SKDSYLKQLPHFTSEHIKRCTDKGVESVFDIMEMEDEERNALLQLTDSQIADVARFCNRYPNIEL 2019
BLAST of CF417349 vs. ExPASy Swiss-Prot
Match: SLH1_YEAST (Antiviral helicase SLH1 OS=Saccharomyces cerevisiae GN=SLH1 PE=1 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 3.077e-24 Identity = 58/121 (47.93%), Postives = 80/121 (66.12%), Query Frame = 2 Query: 23 LHILSGASEYDELPVRHNEDNHNEALSQRVRFAVDNNRLD-------DPHVKANLLFQAHFSRLDLPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMHLLQMVMQGLWFEQD 364 L LS A EY+ELPVR E NE +SQ+ R++V++ D DPHVK LL QAH SR+DLPI+DY+ D SVLDQS+RI+QA ID+ + G+ + +T + ++Q + QG W+E D Sbjct: 1660 LRWLSLAVEYNELPVRGGEIIMNEEMSQQSRYSVESTFTDEFELPMWDPHVKTFLLLQAHLSRVDLPIADYIQDTVSVLDQSLRILQAYIDVASELGYFHTVLTMIKMMQCIKQGYWYEDD 1780
BLAST of CF417349 vs. ExPASy Swiss-Prot
Match: U520_DROME (Putative U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Drosophila melanogaster GN=CG5931 PE=2 SV=4) HSP 1 Score: 104.375 bits (259), Expect = 6.416e-22 Identity = 60/187 (32.09%), Postives = 108/187 (57.75%), Query Frame = 2 Query: 5 TSLEVFLHILSGASEYDELPVRHNEDNHNEALSQRV--RFAVDNN---RLDDPHVKANLLFQAHFSRLDLPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMHLLQMVMQGLWFEQDSALWMFPCMNNDLLGTLRARGISTVQQLLDIPKENLQTV--IGNFPVSRLHQDLQRFPRIQV 544 T + L I+S A+EY+++ VRH+E+ LSQR+ + N + +DPH+K NLL QAH SRL L + D + +L ++IR+IQA +D+ +++GWLS ++ M L QMV Q +W +DS L P + +++ + I TV ++++ E+ + + + ++ + + R+P I++ Sbjct: 1839 TKVRGLLEIISSAAEYEDVVVRHHEEQVLRTLSQRLPNKLTGPNETAPKFNDPHIKTNLLLQAHLSRLQLG-PELQGDTEQILSKAIRLIQACVDVLSSNGWLSPAVAAMELAQMVTQAMW-SKDSYLKQLPHFSPEIVKRCTEKKIETVFDIMELEDEDRTRLLQLSDLQMADVARFCNRYPNIEL 2023
BLAST of CF417349 vs. ExPASy Swiss-Prot
Match: U520_CAEEL (Putative U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Caenorhabditis elegans GN=Y46G5A.4 PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 6.639e-19 Identity = 53/187 (28.34%), Postives = 104/187 (55.61%), Query Frame = 2 Query: 5 TSLEVFLHILSGASEYDELPVRHNEDNHNEALSQRVRFAVDNNRLDDPHVKANLLFQAHFSRLDLPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMHLLQMVMQGLWFEQDSALWMFPCMNNDLLGTLRARGISTVQQLLDIPKENLQTVI--GNFPVSRLHQDLQRFPRIQVKLRLQ 559 T + I+S +SE+ +P+RH ED L++R+ + N + DPHVK NLL AH SR+ L ++ D + ++ ++ R++QA +D+ +++GWLS +I M L QM+ Q + + + L P + LL +A+ +++V +LL++ ++ ++ ++ + + +P I+V L+ Sbjct: 1839 TKTRALIEIISASSEFGNVPMRHKEDVILRQLAERLPGQLKNQKFTDPHVKVNLLIHAHLSRVKL-TAELNKDTELIVLRACRLVQACVDVLSSNGWLSPAIHAMELSQMLTQAM-YSNEPYLKQLPHCSAALLERAKAKEVTSVFELLELENDDRSDILQMEGAELADVARFCNHYPSIEVATELE 2023
BLAST of CF417349 vs. ExPASy Swiss-Prot
Match: HELCL_DICDI (Activating signal cointegrator 1 complex subunit 3-like OS=Dictyostelium discoideum GN=ascc3l PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 6.639e-19 Identity = 52/181 (28.73%), Postives = 95/181 (52.49%), Query Frame = 2 Query: 23 LHILSGASEYDELPVRHNEDNHNEALSQRVRFAVDNNRLDDPHVKANLLFQAHFSRLDLPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMHLLQMVMQGLWFEQDSALWMFPCMNNDLLGTLRARGISTVQQLLDI-PKENLQTV-IGNFPVSRLHQDLQRFPRIQVKLRLQ 559 + I+S A E++ LP+RH ED L+ + +D + K N+L Q HFSR + +D D K +L+ + R++QA++D+ +++ WL +I M L QM+ Q +W + DS P MN + + ++GI +V L+ + +Q + + + L Q ++P I + ++Q Sbjct: 1926 MDIISNAPEFNSLPIRHREDQILMKLASHLPQKIDKPNYQEISTKVNVLLQCHFSRESIS-ADLYQDQKFILENATRLLQAIVDVISSNSWLQPAIAAMELSQMITQAMW-DSDSVFKQLPHMNKRRIDAITSQGIESVFDLMSLDDNSRIQLLDLSQQESNDLVQSFMKYPDIDISYQVQ 2104
BLAST of CF417349 vs. ExPASy Swiss-Prot
Match: BRR2_SCHPO (Pre-mRNA-splicing factor brr2 OS=Schizosaccharomyces pombe GN=brr2 PE=1 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.479e-18 Identity = 54/187 (28.88%), Postives = 99/187 (52.94%), Query Frame = 2 Query: 5 TSLEVFLHILSGASEYDELPVRHNEDNHNEALSQRVRFAVDNNRLDDPHVKANLLFQAHFSRLDLPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMHLLQMVMQGLWFEQDSALWMFPCMNNDLLGTLRARGISTVQQLLDIPKENLQTVI--GNFPVSRLHQDLQRFPRIQVKLRLQ 559 T ++ L I++ A+EY++LP+R ED E + R+ + N +DPH K+ +L AHFSR +LP V D K +L + ++ A +D ++ G L + I M + QMV Q LW ++DS L P ++ L+ G+ V ++D+ E ++ N +++ + + ++P I + ++ Sbjct: 1876 TKMKGLLEIVTSAAEYEQLPIRKYEDIVLERIHSRLPVRLSNPNYEDPHTKSFILLAAHFSRFELP-PGLVIDQKFILTRVHNLLGACVDTLSSEGHLIACIRPMEMSQMVTQALW-DRDSPLKQIPYFDDALIERCNKEGVHDVFDIIDLDDEKRTELLHMDNAHLAKCAEFINKYPDIDIDFEIE 2060
BLAST of CF417349 vs. ExPASy Swiss-Prot
Match: MUG81_SCHPO (Putative helicase mug81 OS=Schizosaccharomyces pombe GN=mug81 PE=1 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 3.295e-18 Identity = 48/119 (40.34%), Postives = 76/119 (63.87%), Query Frame = 2 Query: 2 DTSLEVFLHILSGASEYDELPVRHNEDNHNEALSQRVRFAVD--NNRLDDPHVKANLLFQAHFSRLDLPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMHLLQMVMQGLW 352 + ++ L +L+ ASE+D+L +RHNED N +++ ++++ N + D HVKA +L QAH +RL LP+ DYVTD +VLDQ IRIIQ+ ID+ A G+ + + L+Q + Q + Sbjct: 1645 NAEFDLALQLLAEASEFDDLAIRHNEDLINIEINKSLKYSAACLNLPMVDAHVKAFILTQAHMARLKLPVDDYVTDTSTVLDQVIRIIQSYIDVSAELGYSHVCLQYISLMQCLKQACY 1763
BLAST of CF417349 vs. ExPASy Swiss-Prot
Match: BRR2_YEAST (Pre-mRNA-splicing helicase BRR2 OS=Saccharomyces cerevisiae GN=BRR2 PE=1 SV=2) HSP 1 Score: 82.4185 bits (202), Expect = 2.611e-15 Identity = 51/162 (31.48%), Postives = 95/162 (58.64%), Query Frame = 2 Query: 5 TSLEVFLHILSGASEYDELPVRHNEDNHNEALSQRV--RFAVDNNRLDDPHVKANLLFQAHFSRLDLPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMHLLQMVMQGLWFEQDSALWMFPCMNNDLLGTLRARGISTVQQLLDIPKENLQTVI 484 ++L+ L++LS A E++ +P+R + LS+R+ RF ++ K LL QA+FSRL+LP+ D+ DLK +L++ + +I ++DI + +G+L+++ T M L QM++QG+W + D+ L P NN +L + + TV ++ + E ++ Sbjct: 1874 STLKNMLYVLSTAVEFESVPLRKGDRALLVKLSKRLPLRFP-EHTSSGSVSFKVFLLLQAYFSRLELPV-DFQNDLKDILEKVVPLINVVVDILSANGYLNAT-TAMDLAQMLIQGVW-DVDNPLRQIPHFNNKILEKCKEINVETVYDIMALEDEERDEIL 2031 The following BLAST results are available for this feature:
BLAST of CF417349 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 10
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CF417349 ID=CF417349; Name=CF417349; organism=Citrus sinensis; type=EST; length=716bpback to top |