CF417379

Overview
NameCF417379
Unique NameCF417379
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length613
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417379 vs. ExPASy Swiss-Prot
Match: RNS2_ARATH (Ribonuclease 2 OS=Arabidopsis thaliana GN=RNS2 PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 8.969e-53
Identity = 93/154 (60.39%), Postives = 114/154 (74.03%), Query Frame = 2
Query:    2 QYWPSYRCGSTSTCYSGEGLFWAHEWEKHGTCSFPVVRDEYSYFSTTLNLYFKYNVTRVLNEAGYLPSNTEKYPLGGIVSAIQNAFHATPKLDCSKDAVNELHLCFYKDFKPRDCIIERSPENDNYFSSSSCPKYVSLPVYMSLGVDDATAAIP 463
            +YWPS  CGS S+C  G+G FW HEWEKHGTCS PV  DEY+YF TTLNLY K+NVT VL +AGY+ SN+EKYPLGGIV+AIQNAFH TP++ C +DA++E+ +CFYKDFKPRDC+      + +  S  SCPKYVSLP Y  L  +     +P
Sbjct:  105 KYWPSLSCGSPSSCNGGKGSFWGHEWEKHGTCSSPVFHDEYNYFLTTLNLYLKHNVTDVLYQAGYVASNSEKYPLGGIVTAIQNAFHITPEVVCKRDAIDEIRICFYKDFKPRDCV-----GSQDLTSRKSCPKYVSLPEYTPLDGEAMVLKMP 253          
BLAST of CF417379 vs. ExPASy Swiss-Prot
Match: RNOY_CRAGI (Ribonuclease Oy OS=Crassostrea gigas PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.811e-14
Identity = 43/143 (30.07%), Postives = 66/143 (46.15%), Query Frame = 2
Query:    2 QYWPSYRCGSTSTCYSGEGLFWAHEWEKHGTC--SFPVVRDEYSYFSTTLNLYFKYNVTRVLNEAGYLPSNTEKYPLGGIVSAIQNAFHATPKLDC-------SKDAVNELHLCFYKDFKPRDCIIERSPENDNYFSSSSCPK 403
            +YWP+    + +        FW HEW KHGTC  S P   +E  YF   L L+ KYN++R+L   G LPS T  Y +    +A++        ++C        K  + E+ +C  K+F+   C       N    S ++CP+
Sbjct:   71 KYWPNLYPDTKANS------FWEHEWSKHGTCATSLPATSNELKYFGMGLKLHAKYNISRILVNQGILPSKTAGYMINETEAAVKRELGVDAVIECVYDKEKTKKQLLYEISICLTKEFELISC-------NKKEVSETTCPR 200          
BLAST of CF417379 vs. ExPASy Swiss-Prot
Match: RNS1_ARATH (Ribonuclease 1 OS=Arabidopsis thaliana GN=RNS1 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.320e-13
Identity = 43/108 (39.81%), Postives = 61/108 (56.48%), Query Frame = 2
Query:    8 WPSYRCGSTSTCYSGEGLFWAHEWEKHGTCSFPVVRDEYSYFSTTLNLYFKYNVTRVLNEAGYLPSNTEKYPLGGIVSAIQNAFHATPKLDCSKDA-----VNELHLC 316
            WP+  C S S    GE  FW HEWEKHGTCS  V+ D++ YF T LNL  K N+   L +AG  P   + Y L  I  +I+ +   TP ++C++D      + +++LC
Sbjct:  102 WPTLACPSGS----GEA-FWEHEWEKHGTCSESVI-DQHEYFQTALNLKQKTNLLGALTKAGINPDG-KSYSLESIRDSIKESIGFTPWVECNRDGSGNSQLYQVYLC 202          
BLAST of CF417379 vs. ExPASy Swiss-Prot
Match: RNPB_PHYPO (Ribonuclease Phyb OS=Physarum polycephalum PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.640e-12
Identity = 44/136 (32.35%), Postives = 63/136 (46.32%), Query Frame = 2
Query:    2 QYWPSYRCGSTSTCYSGEGLFWAHEWEKHGTCSFPVVRDEYSYFSTTLNLYFKYNVTRVLNEAGYLPSNTEKYPLGGIVSAIQNAFHATPKLDCSKDAVNELHLCFYKDFKPRDCIIERSPENDNYFSSSSCPKYV 409
            Q WPS+   + S        FW+HEW KHGTCS      E+ +F+T L+LY +Y+V   L+  G  P ++       ++S I +     P L+C       + LC  K+ + RDC        DN  S   CP  V
Sbjct:   59 QVWPSFTGDNAS--------FWSHEWSKHGTCSGYA---EHDFFATVLSLYDQYDVKSALDNGGIEPGSS-SVSSDSLISVITDNIGGVPVLNCEGSTFASVGLCITKNLELRDC-------PDNMGSFWDCPAKV 175          
BLAST of CF417379 vs. ExPASy Swiss-Prot
Match: RNLX_SOLLC (Intracellular ribonuclease LX OS=Solanum lycopersicum GN=RNALX PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 3.448e-12
Identity = 40/109 (36.70%), Postives = 61/109 (55.96%), Query Frame = 2
Query:    8 WPSYRCGSTSTCYSGEGL-FWAHEWEKHGTCSFPVVRDEYSYFSTTLNLYFKYNVTRVLNEAGYLPSNTEKYPLGGIVSAIQNAFHATPKLDCSKDA-----VNELHLC 316
            WPS  C S+      +GL FW+HEW KHGTCS     ++++YF T L+   K N+ + LN AG  P N + Y +  I  AI+     TP ++C+ D+     + +++LC
Sbjct:  100 WPSLACPSS------DGLKFWSHEWLKHGTCS---ALNQHAYFQTALDFKTKSNLLQNLNNAGIKPRNGDYYGVESIKKAIEKGVGHTPFIECNVDSQGNHQLYQVYLC 199          
BLAST of CF417379 vs. ExPASy Swiss-Prot
Match: RNLE_SOLLC (Extracellular ribonuclease LE OS=Solanum lycopersicum PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.235e-11
Identity = 38/98 (38.78%), Postives = 55/98 (56.12%), Query Frame = 2
Query:    2 QYWPSYRCGSTSTCYSGEG-LFWAHEWEKHGTCSFPVVRDEYSYFSTTLNLYFKYNVTRVLNEAGYLPSNTEKYPLGGIVSAIQNAFHATPKLDCSKD 292
            Q WP      T  C SG G  FW+HEWEKHGTC+  V+ ++++YF   L+L  + ++  +L  A   P   E Y L  I +AI++A   TP + C+ D
Sbjct:   99 QNWP------TLACPSGSGSTFWSHEWEKHGTCAESVLTNQHAYFKKALDLKNQIDLLSILQGADIHPDG-ESYDLVNIRNAIKSAIGYTPWIQCNVD 189          
BLAST of CF417379 vs. ExPASy Swiss-Prot
Match: RNS1_PYRPY (Ribonuclease S-1 OS=Pyrus pyrifolia PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.979e-11
Identity = 42/124 (33.87%), Postives = 61/124 (49.19%), Query Frame = 2
Query:   62 FWAHEWEKHGTCSFPVVRDEYSYFSTTLNLYF--KYNVTRVLNEAGYLPSNTEKYPLGGIVSAIQNAFHAT-PKLDCSKDA-----VNELHLCFYKDFKPRDCIIERSPENDNYFSSSSCPKYV 409
            FW  EW KHGTC +P ++D+  Y  T + +Y   K NV+ +L++A   P+ T + PL  I +AI+   + T PK  C K+      + E+ LC  +D K         P      S  SCP  V
Sbjct:  108 FWEKEWIKHGTCGYPTIKDDMHYLQTVIRMYITQKQNVSAILSKAAIQPNGTNR-PLVDIENAIRRGTNNTKPKFKCQKNTRTTTELVEVTLCSDRDLKK----FINCPHGPPQGSRFSCPSSV 226          
BLAST of CF417379 vs. ExPASy Swiss-Prot
Match: RNDI_DICDI (Ribonuclease DdI OS=Dictyostelium discoideum GN=ddiA PE=1 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 6.503e-11
Identity = 35/108 (32.41%), Postives = 53/108 (49.07%), Query Frame = 2
Query:    8 WPSYRCGSTSTCYSGEGLFWAHEWEKHGTCSFP-VVRDEYSYFSTTLNLYFKYNVTRVLNEAGYLPSNTEKYPLGGIVSAIQNAFHATPKLDCSKDAVNELHLCFYKD 328
            WPS    +T         FW HE+ KHGTCS    + D + YF+T + LY ++N+T  L      PS++  Y    I +AI   F   P + CS   ++ + +C  K+
Sbjct:   99 WPSLTGPNTD--------FWTHEFSKHGTCSITGPITDIHDYFATGIKLYTEFNITAALESENIYPSDSNTYKPVDITNAITTHFGGKPGIQCSSGQLSTVAVCIDKN 198          
The following BLAST results are available for this feature:
BLAST of CF417379 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
RNS2_ARATH8.969e-5360.39Ribonuclease 2 OS=Arabidopsis thaliana GN=RNS2 PE=... [more]
RNOY_CRAGI4.811e-1430.07Ribonuclease Oy OS=Crassostrea gigas PE=1 SV=1[more]
RNS1_ARATH5.320e-1339.81Ribonuclease 1 OS=Arabidopsis thaliana GN=RNS1 PE=... [more]
RNPB_PHYPO2.640e-1232.35Ribonuclease Phyb OS=Physarum polycephalum PE=1 SV... [more]
RNLX_SOLLC3.448e-1236.70Intracellular ribonuclease LX OS=Solanum lycopersi... [more]
RNLE_SOLLC2.235e-1138.78Extracellular ribonuclease LE OS=Solanum lycopersi... [more]
RNS1_PYRPY4.979e-1133.87Ribonuclease S-1 OS=Pyrus pyrifolia PE=1 SV=1[more]
RNDI_DICDI6.503e-1132.41Ribonuclease DdI OS=Dictyostelium discoideum GN=dd... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-309 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_E12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417379 ID=CF417379; Name=CF417379; organism=Citrus sinensis; type=EST; length=613bp
GCAGTACTGGCCATCATACAGATGTGGTTCAACATCAACTTGCTATAGTG
GGGAAGGGCTATTTTGGGCTCATGAGTGGGAGAAGCACGGAACTTGTTCT
TTTCCAGTAGTTAGAGATGAATACAGTTACTTTTCAACTACCCTCAACTT
GTACTTTAAATATAATGTCACGAGAGTACTGAATGAAGCTGGATATCTTC
CTTCTAATACTGAAAAGTATCCTCTAGGAGGCATTGTCTCTGCCATTCAG
AATGCTTTCCATGCAACTCCAAAACTGGATTGCTCGAAAGATGCTGTGAA
TGAACTTCATCTATGCTTTTACAAGGATTTCAAGCCTCGGGATTGTATTA
TTGAAAGAAGCCCTGAAAATGACAATTATTTCTCAAGCAGTTCATGTCCC
AAATACGTTAGCTTGCCTGTATATATGTCATTGGGAGTTGATGATGCCAC
GGCTGCAATTCCCTGGATACTTGAAAATGAACCTCTTTGATATCTCATCT
CGGCAGGGTTCATGTCATGTAATAGTTCCAACAATAAACTGCTACCTATT
TATCATCTCAATTGTAAACATCATAATTAAGTGTTTGTGTAATTAGCTGG
ATAACTACTGTCA
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