CF417380

Overview
NameCF417380
Unique NameCF417380
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length498
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2778 contig Csv1_Contig2778:63..560. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417380 vs. ExPASy Swiss-Prot
Match: BR44_RAT (Brain protein 44 OS=Rattus norvegicus GN=Brp44 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.228e-23
Identity = 51/101 (50.50%), Postives = 67/101 (66.34%), Query Frame = 2
Query:    2 KLVALWNHPAGPKTIHFWAPTFKWGISIANIADFSKPPEKISYPQQLAVTATGVIWSRYSMVITPKNWNLFSVNVAMAGTGLYQLSRKIKQDYFSESTEIE 304
            KL  L+NHPAGP+T+ FWAP  KWG+  A +AD ++P EK+S  Q   + ATG IWSRYS+VI PKNW+LF+VN  +   G  QL R  K +   +S  I+
Sbjct:   27 KLRPLYNHPAGPRTVFFWAPIMKWGLVCAGLADMARPAEKLSTAQSTVLMATGFIWSRYSLVIIPKNWSLFAVNFFVGSAGASQLFRIWKYNQELKSKGIQ 127          
BLAST of CF417380 vs. ExPASy Swiss-Prot
Match: BR44_MOUSE (Brain protein 44 OS=Mus musculus GN=Brp44 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.603e-23
Identity = 48/87 (55.17%), Postives = 61/87 (70.11%), Query Frame = 2
Query:    2 KLVALWNHPAGPKTIHFWAPTFKWGISIANIADFSKPPEKISYPQQLAVTATGVIWSRYSMVITPKNWNLFSVNVAMAGTGLYQLSR 262
            KL  L+NHPAGP+T+ FWAP  KWG+  A +AD ++P EK+S  Q   + ATG IWSRYS+VI PKNW+LF+VN  +   G  QL R
Sbjct:   27 KLRPLYNHPAGPRTVFFWAPIMKWGLVCAGLADMARPAEKLSTAQSTVLMATGFIWSRYSLVIIPKNWSLFAVNFFVGSAGASQLFR 113          
BLAST of CF417380 vs. ExPASy Swiss-Prot
Match: BR44_HUMAN (Brain protein 44 OS=Homo sapiens GN=BRP44 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.603e-23
Identity = 48/87 (55.17%), Postives = 61/87 (70.11%), Query Frame = 2
Query:    2 KLVALWNHPAGPKTIHFWAPTFKWGISIANIADFSKPPEKISYPQQLAVTATGVIWSRYSMVITPKNWNLFSVNVAMAGTGLYQLSR 262
            KL  L+NHPAGP+T+ FWAP  KWG+  A +AD ++P EK+S  Q   + ATG IWSRYS+VI PKNW+LF+VN  +   G  QL R
Sbjct:   27 KLRPLYNHPAGPRTVFFWAPIMKWGLVCAGLADMARPAEKLSTAQSAVLMATGFIWSRYSLVIIPKNWSLFAVNFFVGAAGASQLFR 113          
BLAST of CF417380 vs. ExPASy Swiss-Prot
Match: BR44_PONAB (Brain protein 44 OS=Pongo abelii GN=BRP44 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 6.736e-22
Identity = 47/87 (54.02%), Postives = 60/87 (68.97%), Query Frame = 2
Query:    2 KLVALWNHPAGPKTIHFWAPTFKWGISIANIADFSKPPEKISYPQQLAVTATGVIWSRYSMVITPKNWNLFSVNVAMAGTGLYQLSR 262
            KL  L+NHPAGP+T+ FWAP  K G+  A +AD ++P EK+S  Q   + ATG IWSRYS+VI PKNW+LF+VN  +   G  QL R
Sbjct:   27 KLRPLYNHPAGPRTVFFWAPIMKRGLVCAGLADMARPAEKLSTAQSAVLMATGFIWSRYSLVIIPKNWSLFAVNFFVGAAGASQLFR 113          
BLAST of CF417380 vs. ExPASy Swiss-Prot
Match: YAI9_SCHPO (UPF0041 protein C24B11.09 OS=Schizosaccharomyces pombe GN=SPAC24B11.09 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 4.827e-20
Identity = 40/82 (48.78%), Postives = 58/82 (70.73%), Query Frame = 2
Query:   17 WNHPAGPKTIHFWAPTFKWGISIANIADFSKPPEKISYPQQLAVTATGVIWSRYSMVITPKNWNLFSVNVAMAGTGLYQLSR 262
            WNHPAGPKT+HFWAP  KW + ++ I D+++ PE +S  Q  A+ ATG IW+R+S+++ PKN+   +VN  +A  G  Q+SR
Sbjct:   10 WNHPAGPKTVHFWAPAMKWTLVLSGIGDYARSPEYLSIRQYAALCATGAIWTRWSLIVRPKNYFNATVNFFLAIVGAVQVSR 91          
BLAST of CF417380 vs. ExPASy Swiss-Prot
Match: YXX3_CAEEL (UPF0041 protein F53F10.3 OS=Caenorhabditis elegans GN=F53F10.3 PE=2 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 6.305e-20
Identity = 45/82 (54.88%), Postives = 57/82 (69.51%), Query Frame = 2
Query:   17 WNHPAGPKTIHFWAPTFKWGISIANIADFSKPPEKISYPQQLAVTATGVIWSRYSMVITPKNWNLFSVNVAMAGTGLYQLSR 262
            WNH AGPKT+ FWAPT KW +  A +AD ++P +K+S  Q  A+ ATG IW+RY +VITP N+ L SVN  +  TGL QL R
Sbjct:   31 WNHAAGPKTVFFWAPTIKWTLIGAGLADLARPADKLSLYQNSALFATGAIWTRYCLVITPINYYLSSVNFFVMCTGLAQLCR 112          
BLAST of CF417380 vs. ExPASy Swiss-Prot
Match: FMP43_YEAST (UPF0041 protein FMP43 OS=Saccharomyces cerevisiae GN=FMP43 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.834e-19
Identity = 42/82 (51.22%), Postives = 55/82 (67.07%), Query Frame = 2
Query:   17 WNHPAGPKTIHFWAPTFKWGISIANIADFSKPPEKISYPQQLAVTATGVIWSRYSMVITPKNWNLFSVNVAMAGTGLYQLSR 262
            WN   GPKT+HFWAPT KWG+  A + D  +P EK+S  Q L++ AT +IW+R+S VI PKN+ L SVN  +  T  Y L+R
Sbjct:   14 WNSETGPKTVHFWAPTLKWGLVFAGLNDIKRPVEKVSGAQNLSLLATALIWTRWSFVIKPKNYLLASVNFFLGCTAGYHLTR 95          
BLAST of CF417380 vs. ExPASy Swiss-Prot
Match: YHW2_YEAST (UPF0041 protein YHR162W OS=Saccharomyces cerevisiae GN=YHR162W PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 5.901e-18
Identity = 41/82 (50.00%), Postives = 53/82 (64.63%), Query Frame = 2
Query:   17 WNHPAGPKTIHFWAPTFKWGISIANIADFSKPPEKISYPQQLAVTATGVIWSRYSMVITPKNWNLFSVNVAMAGTGLYQLSR 262
            W    GPKT+HFWAPT KWG+  A  +D  +P EKIS  Q L++ +T +IW+R+S VI P+N  L SVN  +  T  YQL R
Sbjct:   14 WQSETGPKTVHFWAPTLKWGLVFAGFSDMKRPVEKISGAQNLSLLSTALIWTRWSFVIKPRNILLASVNSFLCLTAGYQLGR 95          
The following BLAST results are available for this feature:
BLAST of CF417380 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
BR44_RAT1.228e-2350.50Brain protein 44 OS=Rattus norvegicus GN=Brp44 PE=... [more]
BR44_MOUSE1.603e-2355.17Brain protein 44 OS=Mus musculus GN=Brp44 PE=1 SV=... [more]
BR44_HUMAN1.603e-2355.17Brain protein 44 OS=Homo sapiens GN=BRP44 PE=1 SV=... [more]
BR44_PONAB6.736e-2254.02Brain protein 44 OS=Pongo abelii GN=BRP44 PE=2 SV=... [more]
YAI9_SCHPO4.827e-2048.78UPF0041 protein C24B11.09 OS=Schizosaccharomyces p... [more]
YXX3_CAEEL6.305e-2054.88UPF0041 protein F53F10.3 OS=Caenorhabditis elegans... [more]
FMP43_YEAST1.834e-1951.22UPF0041 protein FMP43 OS=Saccharomyces cerevisiae ... [more]
YHW2_YEAST5.901e-1850.00UPF0041 protein YHR162W OS=Saccharomyces cerevisia... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-310 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_F01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417380 ID=CF417380; Name=CF417380; organism=Citrus sinensis; type=EST; length=498bp
CAAGCTCGTAGCTCTCTGGAACCACCCGGCTGGTCCTAAAACCATTCATT
TTTGGGCTCCAACATTCAAATGGGGCATCAGCATAGCAAACATTGCAGAC
TTTTCAAAGCCACCAGAAAAGATCTCCTATCCTCAGCAACTAGCTGTTAC
TGCTACCGGAGTTATTTGGTCGCGCTACAGCATGGTGATTACTCCGAAAA
ACTGGAACCTTTTTAGTGTCAACGTTGCAATGGCTGGGACGGGCTTGTAT
CAACTATCACGCAAAATCAAGCAAGATTACTTCTCCGAGAGCACCGAGAT
AGAGGCAGCTGCAGTGCAAGAATGATGATGCAAATTTCCTAAAGCCTAAA
CTTGTACCATTTTTCCTTTTTTCTTTTTGCTATTGTGAAAAACTGAATGC
ATTTCAAAAATGCTATCTTCGTTTGCTGTTGGATTGGTTGGTGCGAGTTG
TCTAACGGTGCCAAATTGATTGTAATGAAAATGAAAATTAATATGATT
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