CF417381
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSA4_SPIOL (Proteasome subunit alpha type-4 OS=Spinacia oleracea GN=PAC1 PE=2 SV=1) HSP 1 Score: 231.491 bits (589), Expect = 8.164e-101 Identity = 115/119 (96.64%), Postives = 119/119 (100.00%), Query Frame = 1 Query: 1 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYT 357 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGIL+KDGVVL+GEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYT++YQEPMPVEQLVQSLCDTKQGYT Sbjct: 4 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILAKDGVVLIGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTFSYQEPMPVEQLVQSLCDTKQGYT 122 HSP 2 Score: 129.028 bits (323), Expect = 8.164e-101 Identity = 60/78 (76.92%), Postives = 65/78 (83.33%), Query Frame = 2 Query: 359 QFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTM 592 QFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWK S+LKQDYKDD++RE+AV+LALK LSKTM Sbjct: 123 QFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKATAIGANNQAAQSMLKQDYKDDVTREDAVKLALKALSKTM 200 HSP 3 Score: 50.0618 bits (118), Expect = 8.164e-101 Identity = 24/33 (72.73%), Postives = 29/33 (87.88%), Query Frame = 3 Query: 582 AKPWDSTSLTSDKLDLAEXFLMPSGKVKYQVCS 680 +K DSTSLTS+KL+LAE +L+PSGKVKYQV S Sbjct: 197 SKTMDSTSLTSEKLELAEVYLLPSGKVKYQVHS 229
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSA4_PETHY (Proteasome subunit alpha type-4 OS=Petunia hybrida GN=PAC1 PE=2 SV=1) HSP 1 Score: 231.491 bits (589), Expect = 8.001e-98 Identity = 117/126 (92.86%), Postives = 120/126 (95.24%), Query Frame = 1 Query: 1 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTPVWRSPP 378 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGI SKDGVVLVGEKKVTSKLLQTSTS+EKMYKIDDHVACAVAGIMSDANILINTARVQAQRYT++YQEPMPVEQLVQSLCDTKQGYT PP Sbjct: 4 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGISSKDGVVLVGEKKVTSKLLQTSTSSEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTFSYQEPMPVEQLVQSLCDTKQGYTQYGGLPP 129 HSP 2 Score: 124.405 bits (311), Expect = 8.001e-98 Identity = 59/78 (75.64%), Postives = 64/78 (82.05%), Query Frame = 2 Query: 359 QFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTM 592 Q+GGL PFGVSFLFAGWDKN+GFQL+MSDPSGNY GWK S+LKQDYKDDI+REEAVQLALKVLSKTM Sbjct: 123 QYGGLPPFGVSFLFAGWDKNFGFQLFMSDPSGNYAGWKAAAIGANNQAAQSMLKQDYKDDITREEAVQLALKVLSKTM 200 HSP 3 Score: 44.669 bits (104), Expect = 8.001e-98 Identity = 23/33 (69.70%), Postives = 27/33 (81.82%), Query Frame = 3 Query: 582 AKPWDSTSLTSDKLDLAEXFLMPSGKVKYQVCS 680 +K DSTSLTS+KL+LAE FL +GKVKYQ CS Sbjct: 197 SKTMDSTSLTSEKLELAEVFL-SNGKVKYQACS 228
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSA4_ARATH (Proteasome subunit alpha type-4 OS=Arabidopsis thaliana GN=PAC1 PE=1 SV=1) HSP 1 Score: 229.95 bits (585), Expect = 5.109e-97 Identity = 115/119 (96.64%), Postives = 117/119 (98.32%), Query Frame = 1 Query: 1 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYT 357 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVL+GEKKVTSKLLQTSTS EKMYKIDDHVACAVAGIMSDANILINTARVQAQRYT+ YQEPMPVEQLVQSLCDTKQGYT Sbjct: 4 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLIGEKKVTSKLLQTSTSAEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTFMYQEPMPVEQLVQSLCDTKQGYT 122 HSP 2 Score: 126.716 bits (317), Expect = 5.109e-97 Identity = 60/78 (76.92%), Postives = 65/78 (83.33%), Query Frame = 2 Query: 359 QFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTM 592 QFGGLRPFGVSFLFAGWDK++GFQLYMSDPSGNYGGWK SILKQDYKDD +REEAV+LALKVL+KTM Sbjct: 123 QFGGLRPFGVSFLFAGWDKHHGFQLYMSDPSGNYGGWKAAAVGANNQAAQSILKQDYKDDATREEAVELALKVLTKTM 200 HSP 3 Score: 41.2022 bits (95), Expect = 5.109e-97 Identity = 21/32 (65.62%), Postives = 24/32 (75.00%), Query Frame = 3 Query: 585 KPWDSTSLTSDKLDLAEXFLMPSGKVKYQVCS 680 K DSTSLTS+KL+LAE +L PS VKY V S Sbjct: 198 KTMDSTSLTSEKLELAEVYLTPSKTVKYHVHS 229
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSA4B_ORYSJ (Proteasome subunit alpha type-4-2 OS=Oryza sativa subsp. japonica GN=Os06g0167600 PE=2 SV=1) HSP 1 Score: 211.846 bits (538), Expect = 6.359e-91 Identity = 104/119 (87.39%), Postives = 112/119 (94.12%), Query Frame = 1 Query: 1 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYT 357 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSA+G+L+ DGVVLVGEKKVTSKLLQTS S EKMYKID H+ACAVAGIMSDANIL+NTAR+ AQRY +YQEP+PVEQLVQSLCDTKQGYT Sbjct: 4 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSALGVLAADGVVLVGEKKVTSKLLQTSRSAEKMYKIDSHLACAVAGIMSDANILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGYT 122 HSP 2 Score: 120.553 bits (301), Expect = 6.359e-91 Identity = 57/78 (73.08%), Postives = 63/78 (80.77%), Query Frame = 2 Query: 359 QFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTM 592 QFGGLRPFGVSFLFAGWDK++GFQLYMSDPSGNY GWK S+LKQDY+D ++REEAV LALKVLSKTM Sbjct: 123 QFGGLRPFGVSFLFAGWDKHHGFQLYMSDPSGNYSGWKAAAVGANSQAAQSMLKQDYRDGLTREEAVALALKVLSKTM 200 HSP 3 Score: 45.0542 bits (105), Expect = 6.359e-91 Identity = 22/34 (64.71%), Postives = 29/34 (85.29%), Query Frame = 3 Query: 582 AKPWDSTSLTSDKLDLAEXFLMP-SGKVKYQVCS 680 +K DSTSLT++KL+LAE FL P +G+V+YQVCS Sbjct: 197 SKTMDSTSLTAEKLELAEVFLQPGTGEVQYQVCS 230
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSA4B_ORYSI (Proteasome subunit alpha type-4-2 OS=Oryza sativa subsp. indica GN=OsI_021067 PE=1 SV=1) HSP 1 Score: 211.846 bits (538), Expect = 6.359e-91 Identity = 104/119 (87.39%), Postives = 112/119 (94.12%), Query Frame = 1 Query: 1 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYT 357 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSA+G+L+ DGVVLVGEKKVTSKLLQTS S EKMYKID H+ACAVAGIMSDANIL+NTAR+ AQRY +YQEP+PVEQLVQSLCDTKQGYT Sbjct: 4 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSALGVLAADGVVLVGEKKVTSKLLQTSRSAEKMYKIDSHLACAVAGIMSDANILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGYT 122 HSP 2 Score: 120.553 bits (301), Expect = 6.359e-91 Identity = 57/78 (73.08%), Postives = 63/78 (80.77%), Query Frame = 2 Query: 359 QFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTM 592 QFGGLRPFGVSFLFAGWDK++GFQLYMSDPSGNY GWK S+LKQDY+D ++REEAV LALKVLSKTM Sbjct: 123 QFGGLRPFGVSFLFAGWDKHHGFQLYMSDPSGNYSGWKAAAVGANSQAAQSMLKQDYRDGLTREEAVALALKVLSKTM 200 HSP 3 Score: 45.0542 bits (105), Expect = 6.359e-91 Identity = 22/34 (64.71%), Postives = 29/34 (85.29%), Query Frame = 3 Query: 582 AKPWDSTSLTSDKLDLAEXFLMP-SGKVKYQVCS 680 +K DSTSLT++KL+LAE FL P +G+V+YQVCS Sbjct: 197 SKTMDSTSLTAEKLELAEVFLQPGTGEVQYQVCS 230
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSA4A_ORYSJ (Proteasome subunit alpha type-4-1 OS=Oryza sativa subsp. japonica GN=PAC1 PE=2 SV=1) HSP 1 Score: 211.846 bits (538), Expect = 8.287e-91 Identity = 104/119 (87.39%), Postives = 112/119 (94.12%), Query Frame = 1 Query: 1 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYT 357 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSA+G+L+ DGVVLVGEKKVTSKLLQTS S EKMYKID H+ACAVAGIMSDANIL+NTAR+ AQRY +YQEP+PVEQLVQSLCDTKQGYT Sbjct: 4 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSALGVLAADGVVLVGEKKVTSKLLQTSRSAEKMYKIDSHLACAVAGIMSDANILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGYT 122 HSP 2 Score: 120.168 bits (300), Expect = 8.287e-91 Identity = 57/78 (73.08%), Postives = 63/78 (80.77%), Query Frame = 2 Query: 359 QFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTM 592 QFGGLRPFGVSFLFAGWDK++GFQLYMSDPSGNY GWK S+LKQDY+D ++REEAV LALKVLSKTM Sbjct: 123 QFGGLRPFGVSFLFAGWDKHHGFQLYMSDPSGNYSGWKAAAVGANSQAAQSMLKQDYRDGMTREEAVALALKVLSKTM 200 HSP 3 Score: 45.0542 bits (105), Expect = 8.287e-91 Identity = 22/34 (64.71%), Postives = 29/34 (85.29%), Query Frame = 3 Query: 582 AKPWDSTSLTSDKLDLAEXFLMP-SGKVKYQVCS 680 +K DSTSLT++KL+LAE FL P +G+V+YQVCS Sbjct: 197 SKTMDSTSLTAEKLELAEVFLQPGTGEVQYQVCS 230
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSA4A_ORYSI (Proteasome subunit alpha type-4-1 OS=Oryza sativa subsp. indica GN=OsI_021120 PE=1 SV=2) HSP 1 Score: 211.846 bits (538), Expect = 8.287e-91 Identity = 104/119 (87.39%), Postives = 112/119 (94.12%), Query Frame = 1 Query: 1 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYT 357 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSA+G+L+ DGVVLVGEKKVTSKLLQTS S EKMYKID H+ACAVAGIMSDANIL+NTAR+ AQRY +YQEP+PVEQLVQSLCDTKQGYT Sbjct: 4 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSALGVLAADGVVLVGEKKVTSKLLQTSRSAEKMYKIDSHLACAVAGIMSDANILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGYT 122 HSP 2 Score: 120.168 bits (300), Expect = 8.287e-91 Identity = 57/78 (73.08%), Postives = 63/78 (80.77%), Query Frame = 2 Query: 359 QFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTM 592 QFGGLRPFGVSFLFAGWDK++GFQLYMSDPSGNY GWK S+LKQDY+D ++REEAV LALKVLSKTM Sbjct: 123 QFGGLRPFGVSFLFAGWDKHHGFQLYMSDPSGNYSGWKAAAVGANSQAAQSMLKQDYRDGMTREEAVALALKVLSKTM 200 HSP 3 Score: 45.0542 bits (105), Expect = 8.287e-91 Identity = 22/34 (64.71%), Postives = 29/34 (85.29%), Query Frame = 3 Query: 582 AKPWDSTSLTSDKLDLAEXFLMP-SGKVKYQVCS 680 +K DSTSLT++KL+LAE FL P +G+V+YQVCS Sbjct: 197 SKTMDSTSLTAEKLELAEVFLQPGTGEVQYQVCS 230
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSA4_DICDI (Proteasome subunit alpha type-4 OS=Dictyostelium discoideum GN=psmA4 PE=2 SV=1) HSP 1 Score: 180.644 bits (457), Expect = 4.987e-70 Identity = 88/120 (73.33%), Postives = 103/120 (85.83%), Query Frame = 1 Query: 1 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTS-TEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYT 357 RYD RTTIFSPEGR+YQVEYAM AI +AG+ +GIL+KDG+VL EKK T+KLL +STS +EKM+KID+HV CAVAGI SDANILIN AR+ +QR+ Y YQEPMPVEQLV +CDTKQGYT Sbjct: 4 RYDQRTTIFSPEGRVYQVEYAMTAIRHAGATVGILAKDGIVLAAEKKTTAKLLDSSTSISEKMFKIDEHVVCAVAGITSDANILINYARLSSQRFFYQYQEPMPVEQLVSQICDTKQGYT 123 HSP 2 Score: 105.531 bits (262), Expect = 4.987e-70 Identity = 50/79 (63.29%), Postives = 61/79 (77.22%), Query Frame = 2 Query: 359 QFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWK-XXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTM 592 Q+GGLRPFGVSFL+AGWD++YGFQLY SDPSGN+ GWK S+L+ +YK DIS +EA+QLALKVL+KTM Sbjct: 124 QYGGLRPFGVSFLYAGWDRHYGFQLYQSDPSGNFAGWKATSIGGENSQVAQSVLRSNYKPDISLKEALQLALKVLTKTM 202
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSA4_YEAST (Proteasome component Y13 OS=Saccharomyces cerevisiae GN=PRE9 PE=1 SV=1) HSP 1 Score: 162.54 bits (410), Expect = 7.632e-62 Identity = 79/119 (66.39%), Postives = 97/119 (81.51%), Query Frame = 1 Query: 1 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYT 357 RYDSRTTIFSPEGRLYQVEYA+E+I +AG+AIGI++ DG+VL E+KVTS LL+ TSTEK+YK++D +A AVAG+ +DA ILINTAR+ AQ Y Y E +PVE LV+ L D KQGYT Sbjct: 5 RYDSRTTIFSPEGRLYQVEYALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADAEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYT 123 HSP 2 Score: 96.2857 bits (238), Expect = 7.632e-62 Identity = 43/77 (55.84%), Postives = 56/77 (72.73%), Query Frame = 2 Query: 359 QFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKT 589 Q GGLRPFGVSF++AG+D YG+QLY S+PSGNY GWK ++L+ DYKDD+ ++A++LALK LSKT Sbjct: 124 QHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYKDDMKVDDAIELALKTLSKT 200
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSA4_HUMAN (Proteasome subunit alpha type-4 OS=Homo sapiens GN=PSMA4 PE=1 SV=1) HSP 1 Score: 156.377 bits (394), Expect = 1.297e-61 Identity = 76/119 (63.87%), Postives = 94/119 (78.99%), Query Frame = 1 Query: 1 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYT 357 RYDSRTTIFSPEGRLYQVEYAMEAIG+AG+ +GIL+ DGV+L E++ KLL +EK+YK+++ +AC+VAGI SDAN+L N R+ AQRY YQEP+P EQLV +LCD KQ YT Sbjct: 4 RYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYT 122 HSP 2 Score: 101.679 bits (252), Expect = 1.297e-61 Identity = 48/79 (60.76%), Postives = 59/79 (74.68%), Query Frame = 2 Query: 359 QFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKD-DISREEAVQLALKVLSKTM 592 QFGG RPFGVS L+ GWDK+YGFQLY SDPSGNYGGWK S+LKQDYK+ +++ + A+ LA+KVL+KTM Sbjct: 123 QFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKSALALAIKVLNKTM 201 The following BLAST results are available for this feature:
BLAST of CF417381 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 176
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417381 ID=CF417381; Name=CF417381; organism=Citrus sinensis; type=EST; length=681bpback to top |