CF417387

Overview
NameCF417387
Unique NameCF417387
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length492
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417387 vs. ExPASy Swiss-Prot
Match: FLA7_ARATH (Fasciclin-like arabinogalactan protein 7 OS=Arabidopsis thaliana GN=FLA7 PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.474e-34
Identity = 66/87 (75.86%), Postives = 75/87 (86.21%), Query Frame = 2
Query:  227 FHTFLNYLESTKVLEXFQNQANNTDEGITIFVPKDDAFKSLKKPSLANLTQDXLKQLCLFHALPHYYSFADFKNLSQMSPVRTYAGG 487
            FHTFL+YL ST V+E FQNQANNT+EGITIFVPKDDAFK+ K P L+NLT+D LKQL LFHALPHYYS ++FKNLSQ  PV T+AGG
Sbjct:   57 FHTFLDYLLSTGVIETFQNQANNTEEGITIFVPKDDAFKAQKNPPLSNLTKDQLKQLVLFHALPHYYSLSEFKNLSQSGPVSTFAGG 143          

HSP 2 Score: 27.7202 bits (60), Expect = 1.474e-34
Identity = 12/14 (85.71%), Postives = 14/14 (100.00%), Query Frame = 1
Query:  184 EHVNLTDLLSVAGP 225
            E+VNLT+LLSVAGP
Sbjct:   43 ENVNLTELLSVAGP 56          
BLAST of CF417387 vs. ExPASy Swiss-Prot
Match: FLA12_ARATH (Fasciclin-like arabinogalactan protein 12 OS=Arabidopsis thaliana GN=FLA12 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 4.669e-12
Identity = 36/87 (41.38%), Postives = 52/87 (59.77%), Query Frame = 2
Query:  224 RFHTFLNYLESTKVLEXFQNQANNTDEGITIFVPKDDAFKSLKKPSLANLTQDXLKQLCLFHALPHYYSFADFKNLSQMSPVRTYAG 484
            +F  F+  L+ST V      Q NN+D GITIF P D +F  LK  +L +LT +   +L  FH +P Y S ++F+ +S  +P+RT AG
Sbjct:   49 QFTVFIRLLKSTGVANQLYGQLNNSDNGITIFAPSDSSFTGLKAGTLNSLTDEQQVELIQFHVIPSYVSSSNFQTIS--NPLRTQAG 133          
BLAST of CF417387 vs. ExPASy Swiss-Prot
Match: FLA9_ARATH (Fasciclin-like arabinogalactan protein 9 OS=Arabidopsis thaliana GN=FLA9 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.358e-11
Identity = 37/88 (42.05%), Postives = 53/88 (60.23%), Query Frame = 2
Query:  224 RFHTFLNYLESTKVLEXFQNQANNTDEGITIFVPKDDAFKSLKKPSLANLTQDXLKQLCLFHALPHYYSFADFKNLSQMSPVRTYAGG 487
            +F TF++ L  T+V      Q N++ EG+T+F P D+AF++LK  +L  L+ D   +L L+H  P YYS  D   LS  +PVRT A G
Sbjct:   49 QFTTFIHLLNITQVGSQVNIQVNSSSEGMTVFAPTDNAFQNLKPGTLNQLSPDDQVKLILYHVSPKYYSMDDL--LSVSNPVRTQASG 134          
BLAST of CF417387 vs. ExPASy Swiss-Prot
Match: FLA6_ARATH (Fasciclin-like arabinogalactan protein 6 OS=Arabidopsis thaliana GN=FLA6 PE=2 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 5.162e-11
Identity = 37/88 (42.05%), Postives = 52/88 (59.09%), Query Frame = 2
Query:  224 RFHTFLNYLESTKVLEXFQNQANNTDEGITIFVPKDDAFKSLKKPSLANLTQDXLKQLCLFHALPHYYSFADFKNLSQMSPVRTYAGG 487
            +F T +  L +T+V      Q N++D+G+TIF P D+AF  LK  +L +LT     QL L+H +P YYS +D   L   +PVRT A G
Sbjct:   48 QFTTLIQLLNTTQVGFQVSVQLNSSDQGMTIFAPTDNAFNKLKPGTLNSLTYQQQIQLMLYHIIPKYYSLSDL--LLASNPVRTQATG 133          
The following BLAST results are available for this feature:
BLAST of CF417387 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
FLA7_ARATH1.474e-3475.86Fasciclin-like arabinogalactan protein 7 OS=Arabid... [more]
FLA12_ARATH4.669e-1241.38Fasciclin-like arabinogalactan protein 12 OS=Arabi... [more]
FLA9_ARATH1.358e-1142.05Fasciclin-like arabinogalactan protein 9 OS=Arabid... [more]
FLA6_ARATH5.162e-1142.05Fasciclin-like arabinogalactan protein 6 OS=Arabid... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-317 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_F08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417387 ID=CF417387; Name=CF417387; organism=Citrus sinensis; type=EST; length=492bp
TCAGGAATTTGGCAGAGTTTGGTCAACTTAGCAAAGCAACATAACATACT
TCATGGAAAAAATGGAAGTTTCCATGGCGTTTGATGATTAGTGCACTATT
GCTTTTGGTCTCTTCANCTAATGCTCAGAAAGCTGCTAGACCCTCCCACA
TTCAGTCCAACTCCGGCCCCAGNGCCGGCGCCTGAACATGTGAACCTCAC
TGATTTACTCTCTGTGGCTGGCCCGATTCCACACGTTCCTCAATTACCTT
GAGTCCACTAAAGTGCTTGAGANCTTCCAAAACCAAGCCAACAATACTGA
CGAAGGCATTACCATCTTTGTGCCAAAAGATGATGCCTTCAAGTCTCTCA
AGAAACCTTCTTTAGCCAATCTCACACAGGATCANCTTAAGCAGCTTTGT
CTATTCCATGCCTTGCCACATTACTACTCATTTGCTGATTTCAAGAACCT
TAGCCAAATGAGCCCTGTTCGCACATATGCTGGTGGAGATTA
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