CF417389

Overview
NameCF417389
Unique NameCF417389
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length601
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6249 contig Csv1_Contig6249:80..679. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417389 vs. ExPASy Swiss-Prot
Match: RBS_FAGCR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Fagus crenata GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 3.073e-70
Identity = 108/145 (74.48%), Postives = 125/145 (86.21%), Query Frame = 1
Query:    1 VATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEGWGGPEGIPT 435
            VAT +RA+ AQA+MVAPFTGLKS++AFPAT+K+NNDITS+ASNGGRVQCMKVWPP GL+KFETLSYLPPLS E+L K+I YL+  GWIPCLEFELE  +VYRE++ SPGYYDGRYW MWKLPM+GCTDATQVL E     +  PT
Sbjct:   11 VATVSRATPAQATMVAPFTGLKSTAAFPATRKSNNDITSLASNGGRVQCMKVWPPLGLQKFETLSYLPPLSIESLAKQIEYLILKGWIPCLEFELEHPFVYRENNRSPGYYDGRYWVMWKLPMFGCTDATQVLAELQEASKTYPT 155          

HSP 2 Score: 56.225 bits (134), Expect = 3.073e-70
Identity = 25/33 (75.76%), Postives = 27/33 (81.82%), Query Frame = 2
Query:  413 EVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 511
            E  K YP S +RIIGFDNKRQVQCISF+A KPP
Sbjct:  148 EASKTYPTSHIRIIGFDNKRQVQCISFIAYKPP 180          
BLAST of CF417389 vs. ExPASy Swiss-Prot
Match: RBS0_SOLTU (Ribulose bisphosphate carboxylase small chain C, chloroplastic OS=Solanum tuberosum GN=RBCS-C PE=2 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 2.805e-68
Identity = 103/135 (76.30%), Postives = 121/135 (89.63%), Query Frame = 1
Query:    4 ATANRASLAQASMVAPFTGLKSSSAFPATKKTNN-DITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKE 405
            A A R+++AQASMVAPFTGLKS+++FP TKK NN DITS+ASNGGRV+CM+VWPP  +KK+ETLSYLP LSDE LLKE+ YLL++GW+PCLEFE E G+VYREH+SSPGYYDGRYWTMWKLPM+GCTD TQVL E
Sbjct:   10 AVATRSNVAQASMVAPFTGLKSAASFPVTKKNNNVDITSLASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYREHNSSPGYYDGRYWTMWKLPMFGCTDGTQVLAE 144          

HSP 2 Score: 52.373 bits (124), Expect = 2.805e-68
Identity = 23/36 (63.89%), Postives = 28/36 (77.78%), Query Frame = 2
Query:  407 VGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 514
            V E +  YP +++RIIGFDN RQVQCISF+A KP G
Sbjct:  145 VQEAKNAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 180          
BLAST of CF417389 vs. ExPASy Swiss-Prot
Match: RBS2_PETHY (Ribulose bisphosphate carboxylase small chain SSU11A, chloroplastic OS=Petunia hybrida GN=RBCS PE=3 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 1.799e-67
Identity = 101/134 (75.37%), Postives = 115/134 (85.82%), Query Frame = 1
Query:    4 ATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKE 405
            A A   + AQASMVAPFTGLKS+++FP ++K N DITSIASNGGRVQCM+VWPP G KK+ETLSYLP L+DE LLKEI YLL  GW+PCLEFE E G+VYRE+H+SP YYDGRYWTMWKLPM+GCTDATQVL E
Sbjct:   10 AVATSTNAAQASMVAPFTGLKSAASFPVSRKQNLDITSIASNGGRVQCMQVWPPYGKKKYETLSYLPDLTDEQLLKEIEYLLNKGWVPCLEFETEHGFVYREYHASPRYYDGRYWTMWKLPMFGCTDATQVLGE 143          

HSP 2 Score: 56.9954 bits (136), Expect = 1.799e-67
Identity = 24/34 (70.59%), Postives = 30/34 (88.24%), Query Frame = 2
Query:  413 EVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 514
            E +K YP++++RIIGFDN RQVQCISF+A KPPG
Sbjct:  146 EAKKAYPNAWIRIIGFDNVRQVQCISFIAYKPPG 179          
BLAST of CF417389 vs. ExPASy Swiss-Prot
Match: RBS1_PETHY (Ribulose bisphosphate carboxylase small chain SSU8, chloroplastic OS=Petunia hybrida GN=RBCS PE=3 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 3.059e-67
Identity = 101/134 (75.37%), Postives = 114/134 (85.07%), Query Frame = 1
Query:    4 ATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKE 405
            A A R ++AQASMVAPF GLKS+ +FP + K N DITSIASNGGRVQCM+VWPP G KK+ETLSYLP L+DE LLKEI YLL  GW+PCLEFE E G+VYRE+H+SP YYDGRYWTMWKLPM+GCTDATQVL E
Sbjct:   10 AVATRTNVAQASMVAPFNGLKSAVSFPVSSKQNLDITSIASNGGRVQCMQVWPPYGKKKYETLSYLPDLTDEQLLKEIEYLLNKGWVPCLEFETEHGFVYREYHASPRYYDGRYWTMWKLPMFGCTDATQVLGE 143          

HSP 2 Score: 56.9954 bits (136), Expect = 3.059e-67
Identity = 24/34 (70.59%), Postives = 30/34 (88.24%), Query Frame = 2
Query:  413 EVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 514
            E +K YP++++RIIGFDN RQVQCISF+A KPPG
Sbjct:  146 EAKKAYPNAWIRIIGFDNVRQVQCISFIAYKPPG 179          
BLAST of CF417389 vs. ExPASy Swiss-Prot
Match: RBS1_MESCR (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-1 PE=2 SV=2)

HSP 1 Score: 218.009 bits (554), Expect = 1.258e-65
Identity = 101/135 (74.81%), Postives = 117/135 (86.67%), Query Frame = 1
Query:    1 VATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKE 405
            VAT NR   AQASMVAPF GLKS +AFP TKK NNDITS+A+NGGRVQCM+VWPP G KKFETLSYLPPLS+E+L+KE+ YLL +GW+PCLEFE   G+VYREH ++PGYYDGRYWTMWKLPM+GCTD +QV+ E
Sbjct:   11 VATVNRTP-AQASMVAPFNGLKSVAAFPVTKK-NNDITSVATNGGRVQCMQVWPPLGKKKFETLSYLPPLSEESLMKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAE 143          

HSP 2 Score: 53.5286 bits (127), Expect = 1.258e-65
Identity = 23/32 (71.88%), Postives = 27/32 (84.38%), Query Frame = 2
Query:  413 EVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 508
            E +K YP +F+RIIGFDN RQVQCISF+A KP
Sbjct:  146 EAKKAYPEAFIRIIGFDNVRQVQCISFIAYKP 177          
BLAST of CF417389 vs. ExPASy Swiss-Prot
Match: RBS2_MESCR (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-2 PE=2 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.258e-65
Identity = 101/134 (75.37%), Postives = 116/134 (86.57%), Query Frame = 1
Query:    4 ATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKE 405
            A   R + AQASMVAPFTGLKS SAFP TKK+N DITSIASNGGRVQCM+VWPP G KKFETLSYLPPLS+E+L+KE+ YLL +GW+PCLEFE   G+VYREH ++PGYYDGRYWTMWKLPM+GCTD +QV+ E
Sbjct:    9 AVVGRTTPAQASMVAPFTGLKSVSAFPVTKKSN-DITSIASNGGRVQCMQVWPPLGKKKFETLSYLPPLSEESLMKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAE 141          

HSP 2 Score: 52.373 bits (124), Expect = 1.258e-65
Identity = 23/32 (71.88%), Postives = 26/32 (81.25%), Query Frame = 2
Query:  413 EVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 508
            E +K YP +F RIIGFDN RQVQCISF+A KP
Sbjct:  144 EAKKAYPEAFTRIIGFDNVRQVQCISFIAYKP 175          
BLAST of CF417389 vs. ExPASy Swiss-Prot
Match: RBS6_MESCR (Ribulose bisphosphate carboxylase small chain 6, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-6 PE=3 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 2.788e-65
Identity = 95/132 (71.97%), Postives = 118/132 (89.39%), Query Frame = 1
Query:   10 ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKE 405
            A+R++ AQASMVAPFTGLKS SAFP T+K++ND++++ SNGG+VQCM+VWPP G KKFETLSYLPPLS+E+LLKE+ YLL +GW+PCLEFE   G+VYREH ++PGYYDGRYWTMWKLPM+GCTD +QV+ E
Sbjct:   16 ASRSAGAQASMVAPFTGLKSVSAFPVTRKSSNDLSTVPSNGGKVQCMQVWPPLGKKKFETLSYLPPLSEESLLKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAE 147          

HSP 2 Score: 53.1434 bits (126), Expect = 2.788e-65
Identity = 22/32 (68.75%), Postives = 27/32 (84.38%), Query Frame = 2
Query:  413 EVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 508
            E +K YP +F+RIIGFDN RQVQC+SF+A KP
Sbjct:  150 EAKKAYPEAFIRIIGFDNVRQVQCVSFIAYKP 181          
BLAST of CF417389 vs. ExPASy Swiss-Prot
Match: RBS4_MESCR (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-4 PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 4.742e-65
Identity = 98/132 (74.24%), Postives = 115/132 (87.12%), Query Frame = 1
Query:   10 ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKE 405
            A   + AQA+MVAPF GLKS SAFP T+K NNDITS+ASNGGRVQCM+VWPP G+KKFETLSYLPPLS+E+LLKE+ YLL +GW+PCLEFE   G+VYREH ++PGYYDGRYWTMWKLPM+GCTD +QV+ E
Sbjct:   14 AAATTTAQANMVAPFNGLKSISAFPVTRK-NNDITSVASNGGRVQCMQVWPPLGMKKFETLSYLPPLSEESLLKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAE 144          

HSP 2 Score: 53.1434 bits (126), Expect = 4.742e-65
Identity = 22/32 (68.75%), Postives = 27/32 (84.38%), Query Frame = 2
Query:  413 EVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 508
            E +K YP +F+RIIGFDN RQVQC+SF+A KP
Sbjct:  147 EAKKAYPEAFIRIIGFDNVRQVQCVSFIAYKP 178          
BLAST of CF417389 vs. ExPASy Swiss-Prot
Match: RBS3_MESCR (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-3 PE=2 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 1.788e-64
Identity = 97/132 (73.48%), Postives = 114/132 (86.36%), Query Frame = 1
Query:   10 ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKE 405
            A   + AQA+MVAPF GLKS SAFP T+K NNDITS+ASNGGRVQCM+VWPP G KKFETLSYLPPLS+E+L+KE+ YLL +GW+PCLEFE   G+VYREH ++PGYYDGRYWTMWKLPM+GCTD +QV+ E
Sbjct:   14 AAATTTAQANMVAPFNGLKSVSAFPVTRK-NNDITSVASNGGRVQCMQVWPPLGKKKFETLSYLPPLSEESLMKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAE 144          

HSP 2 Score: 53.5286 bits (127), Expect = 1.788e-64
Identity = 23/32 (71.88%), Postives = 27/32 (84.38%), Query Frame = 2
Query:  413 EVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 508
            E +K YP +F+RIIGFDN RQVQCISF+A KP
Sbjct:  147 EAKKAYPEAFIRIIGFDNVRQVQCISFIAYKP 178          
BLAST of CF417389 vs. ExPASy Swiss-Prot
Match: RBS5_MESCR (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-5 PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 1.494e-63
Identity = 98/132 (74.24%), Postives = 114/132 (86.36%), Query Frame = 1
Query:   10 ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKE 405
            A   + AQA+MVAPF GLKS SAFP T+K NNDITS+ASNGGRVQCM VWPP G+KKFETLSYLPPLS+E+LLKE+ YLL +GW+PCLEFE   G+VYREH ++PGYYDGRYWTMWKLPM+GCTD +QV+ E
Sbjct:   14 AAATTTAQANMVAPFNGLKSISAFPVTRK-NNDITSVASNGGRVQCM-VWPPLGMKKFETLSYLPPLSEESLLKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAE 143          

HSP 2 Score: 53.1434 bits (126), Expect = 1.494e-63
Identity = 22/32 (68.75%), Postives = 27/32 (84.38%), Query Frame = 2
Query:  413 EVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 508
            E +K YP +F+RIIGFDN RQVQC+SF+A KP
Sbjct:  146 EAKKAYPEAFIRIIGFDNVRQVQCVSFIAYKP 177          
The following BLAST results are available for this feature:
BLAST of CF417389 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
RBS_FAGCR3.073e-7074.48Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS0_SOLTU2.805e-6876.30Ribulose bisphosphate carboxylase small chain C, c... [more]
RBS2_PETHY1.799e-6775.37Ribulose bisphosphate carboxylase small chain SSU1... [more]
RBS1_PETHY3.059e-6775.37Ribulose bisphosphate carboxylase small chain SSU8... [more]
RBS1_MESCR1.258e-6574.81Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS2_MESCR1.258e-6575.37Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS6_MESCR2.788e-6571.97Ribulose bisphosphate carboxylase small chain 6, c... [more]
RBS4_MESCR4.742e-6574.24Ribulose bisphosphate carboxylase small chain 4, c... [more]
RBS3_MESCR1.788e-6473.48Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS5_MESCR1.494e-6374.24Ribulose bisphosphate carboxylase small chain 5, c... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-319 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_F10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417389 ID=CF417389; Name=CF417389; organism=Citrus sinensis; type=EST; length=601bp
GTTGCCACCGCGAACCGCGCCAGCCTTGCTCAGGCCAGCATGGTCGCCCC
CTTCACCGGCCTCAAGTCTTCTTCTGCTTTCCCAGCAACCAAGAAGACCA
ACAATGACATTACTTCCATTGCAAGCAACGGCGGAAGAGTCCAATGCATG
AAGGTGTGGCCACCAACTGGCTTGAAGAAGTTCGAGACTCTCTCATACCT
CCCGCCACTGTCCGATGAAGCTTTGCTCAAGGAAATCAGTTACCTTCTCC
GCTCCGGCTGGATTCCCTGCTTGGAATTCGAGTTGGAGAAAGGATGGGTG
TACCGTGAGCACCACAGCTCACCAGGATACTACGATGGACGCTACTGGAC
AATGTGGAAGCTGCCCATGTATGGGTGCACAGATGCAACCCAGGTTTTGA
AGGAGGGTTGGGGAGGTCCAGAAGGAATACCCACATTCATTCGTCCGAAT
TATCGGATTTGACAACAAGCGTCAAGTGCAGTGCATCAGTTTCCTTGCTG
CCAAGCCACCAGGCGTCTAGGTTCCCAATTAAATTTGTGTAACCACCCAT
GCAATATTGTTGATTATTATTATGTGTAACCCCCATAATGATCATTCGAT
C
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