CF417392

Overview
NameCF417392
Unique NameCF417392
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length687
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig927 contig Csv1_Contig927:613..1296. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417392 vs. ExPASy Swiss-Prot
Match: BGAL5_ARATH (Beta-galactosidase 5 OS=Arabidopsis thaliana GN=BGAL5 PE=2 SV=1)

HSP 1 Score: 327.405 bits (838), Expect = 1.325e-94
Identity = 150/197 (76.14%), Postives = 173/197 (87.82%), Query Frame = 3
Query:    3 INITRDTSDYLWYMTSVEISSSESFLRGGQKPTLTVESAGHAVHVFINGQFLGSAFGTRENRRFTFSGPANLRAGINKIALLSIAVGLPNVGLHYETWETGVRGAVVLHGLDHGNKDLTWQKWSYQVGLKGEAMNLVSPSEATSVDWTRGSLAAQGQQSLKWYKAYFDAPAGNEPLALDLRGMGKGQVWINGQSIGR 593
            +N+TRDT+DYLWY TSV+I +SESFLRGG+ PTLTV+SAGHAVHVF+NG F GSAFGTRENR+F+FS   NLR G NKIALLS+AVGLPNVG H+ETW TG+ G+VVLHGLD GNKDL+WQKW+YQ GL+GE+MNLVSP+E +SVDW +GSLA Q +Q L WYKAYFDAP GNEPLALDL+ MGKGQ WINGQSIGR
Sbjct:  465 VNVTRDTTDYLWYTTSVDIKASESFLRGGKWPTLTVDSAGHAVHVFVNGHFYGSAFGTRENRKFSFSSQVNLRGGANKIALLSVAVGLPNVGPHFETWATGIVGSVVLHGLDEGNKDLSWQKWTYQAGLRGESMNLVSPTEDSSVDWIKGSLAKQNKQPLTWYKAYFDAPRGNEPLALDLKSMGKGQAWINGQSIGR 661          

HSP 2 Score: 40.817 bits (94), Expect = 1.325e-94
Identity = 15/23 (65.22%), Postives = 20/23 (86.96%), Query Frame = 1
Query:  577 GRA*GGYWMAYAKGDCKTCSYAG 645
            G++ G YWMA+AKGDC +C+YAG
Sbjct:  656 GQSIGRYWMAFAKGDCGSCNYAG 678          
BLAST of CF417392 vs. ExPASy Swiss-Prot
Match: BGAL5_ORYSJ (Beta-galactosidase 5 OS=Oryza sativa subsp. japonica GN=Os03g0165400 PE=2 SV=1)

HSP 1 Score: 302.368 bits (773), Expect = 1.495e-81
Identity = 142/208 (68.27%), Postives = 170/208 (81.73%), Query Frame = 3
Query:    3 INITRDTSDYLWYMTSVEISSSESFLRGGQKPTLTVESAGHAVHVFINGQFLGSAFGTRENRRFTFSGPANLRAGINKIALLSIAVGLPNVGLHYETWETGVRGAVVLHGLDHGNKDLTWQKWSYQVGLKGEAMNLVSPSEATSVDWTRGSLAAQGQQSLKWYKAYFDAPAGNEPLALDLRGMGKGQVWINGQSIGR----ILDGLCK 614
            +N+TRDTSDYLWY+TSVE+  SE FL+GG   +LTV+SAGHA+HVFINGQ  GSA+GTRE+R+ ++SG ANLRAG NK+ALLS+A GLPNVG+HYETW TGV G VV+HGLD G++DLTWQ WSYQVGLKGE MNL S   + SV+W +GSL AQ QQ L WY+AYFD P+G+EPLALD+  MGKGQ+WINGQSIGR      +G CK
Sbjct:  460 LNVTRDTSDYLWYITSVEVDPSEKFLQGGTPLSLTVQSAGHALHVFINGQLQGSAYGTREDRKISYSGNANLRAGTNKVALLSVACGLPNVGVHYETWNTGVVGPVVIHGLDEGSRDLTWQTWSYQVGLKGEQMNLNSLEGSGSVEWMQGSLVAQNQQPLAWYRAYFDTPSGDEPLALDMGSMGKGQIWINGQSIGRYWTAYAEGDCK 667          
BLAST of CF417392 vs. ExPASy Swiss-Prot
Match: BGAL3_ARATH (Beta-galactosidase 3 OS=Arabidopsis thaliana GN=BGAL3 PE=1 SV=1)

HSP 1 Score: 297.36 bits (760), Expect = 4.809e-80
Identity = 133/197 (67.51%), Postives = 157/197 (79.70%), Query Frame = 3
Query:    3 INITRDTSDYLWYMTSVEISSSESFLRGGQKPTLTVESAGHAVHVFINGQFLGSAFGTRENRRFTFSGPANLRAGINKIALLSIAVGLPNVGLHYETWETGVRGAVVLHGLDHGNKDLTWQKWSYQVGLKGEAMNLVSPSEATSVDWTRGSLAAQGQQSLKWYKAYFDAPAGNEPLALDLRGMGKGQVWINGQSIGR 593
            IN+TRDTSDYLWYMTSV+I  SESFL GG+ PTL ++S GHAVH+F+NGQ  GSAFGTR+NRRFT+ G  NL +G N+IALLS+AVGLPNVG H+E+W TG+ G V LHGL  G  DL+WQKW+YQVGLKGEAMNL  P+   S+ W   SL  Q  Q L W+K YFDAP GNEPLALD+ GMGKGQ+W+NG+SIGR
Sbjct:  467 INVTRDTSDYLWYMTSVDIGDSESFLHGGELPTLIIQSTGHAVHIFVNGQLSGSAFGTRQNRRFTYQGKINLHSGTNRIALLSVAVGLPNVGGHFESWNTGILGPVALHGLSQGKMDLSWQKWTYQVGLKGEAMNLAFPTNTPSIGWMDASLTVQKPQPLTWHKTYFDAPEGNEPLALDMEGMGKGQIWVNGESIGR 663          
BLAST of CF417392 vs. ExPASy Swiss-Prot
Match: BGAL_SOLLC (Beta-galactosidase OS=Solanum lycopersicum PE=1 SV=1)

HSP 1 Score: 270.011 bits (689), Expect = 8.222e-72
Identity = 130/197 (65.99%), Postives = 153/197 (77.66%), Query Frame = 3
Query:    3 INITRDTSDYLWYMTSVEISSSESFLRGGQKPTLTVESAGHAVHVFINGQFLGSAFGTRENRRFTFSGPANLRAGINKIALLSIAVGLPNVGLHYETWETGVRGAVVLHGLDHGNKDLTWQKWSYQVGLKGEAMNLVSPSEATSVDWTRGSLAAQGQQSLKWYKAYFDAPAGNEPLALDLRGMGKGQVWINGQSIGR 593
            INITRD SDYLWYMT +EI  +E FL  G  P LTV SAGHA+HVF+NGQ  G+ +G+ EN + TFS   NLRAG+NKI+LLSIAVGLPNVG H+ETW  GV G V L+GL+ G +DLTWQKW Y+VGLKGEA++L S S + SV+W  GSL AQ +Q L WYK  F+AP GNEPLALD+  MGKGQVWINGQS+GR
Sbjct:  456 INITRDVSDYLWYMTDIEIDPTEGFLNSGNWPWLTVFSAGHALHVFVNGQLAGTVYGSLENPKLTFSNGINLRAGVNKISLLSIAVGLPNVGPHFETWNAGVLGPVSLNGLNEGTRDLTWQKWFYKVGLKGEALSLHSLSGSPSVEWVEGSLVAQ-KQPLSWYKTTFNAPDGNEPLALDMNTMGKGQVWINGQSLGR 651          
BLAST of CF417392 vs. ExPASy Swiss-Prot
Match: BGAL1_ARATH (Beta-galactosidase 1 OS=Arabidopsis thaliana GN=BGAL1 PE=1 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 1.313e-69
Identity = 124/197 (62.94%), Postives = 155/197 (78.68%), Query Frame = 3
Query:    3 INITRDTSDYLWYMTSVEISSSESFLRGGQKPTLTVESAGHAVHVFINGQFLGSAFGTRENRRFTFSGPANLRAGINKIALLSIAVGLPNVGLHYETWETGVRGAVVLHGLDHGNKDLTWQKWSYQVGLKGEAMNLVSPSEATSVDWTRGSLAAQGQQSLKWYKAYFDAPAGNEPLALDLRGMGKGQVWINGQSIGR 593
            IN TRDTSDYLWYMT V++ ++E FLR G  PTLTV SAGHA+HVFINGQ  GSA+G+ ++ + TF    NLRAG NKIA+LSIAVGLPNVG H+ETW  GV G V L+GL+ G +DL+WQKW+Y+VGLKGE+++L S S ++SV+W  G+  AQ +Q L WYK  F APAG+ PLA+D+  MGKGQ+WINGQS+GR
Sbjct:  468 INTTRDTSDYLWYMTDVKVDANEGFLRNGDLPTLTVLSAGHAMHVFINGQLSGSAYGSLDSPKLTFRKGVNLRAGFNKIAILSIAVGLPNVGPHFETWNAGVLGPVSLNGLNGGRRDLSWQKWTYKVGLKGESLSLHSLSGSSSVEWAEGAFVAQ-KQPLTWYKTTFSAPAGDSPLAVDMGSMGKGQIWINGQSLGR 663          
BLAST of CF417392 vs. ExPASy Swiss-Prot
Match: BGA12_ARATH (Beta-galactosidase 12 OS=Arabidopsis thaliana GN=BGAL12 PE=2 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 5.950e-65
Identity = 112/197 (56.85%), Postives = 149/197 (75.63%), Query Frame = 3
Query:    3 INITRDTSDYLWYMTSVEISSSESFLRGGQKPTLTVESAGHAVHVFINGQFLGSAFGTRENRRFTFSGPANLRAGINKIALLSIAVGLPNVGLHYETWETGVRGAVVLHGLDHGNKDLTWQKWSYQVGLKGEAMNLVSPSEATSVDWTRGSLAAQGQQSLKWYKAYFDAPAGNEPLALDLRGMGKGQVWINGQSIGR 593
            I+ITRD +DY WY+T + IS  E FL G + P LT+ SAGHA+HVF+NGQ  G+A+G+ E  + TFS    L AG+NK+ALLS A GLPNVG+HYETW TGV G V L+G++ G  D+T  KWSY++G KGEA+++ + + +++V+W  GSL A+ +Q L WYK+ FD+P GNEPLALD+  MGKGQ+WINGQ+IGR
Sbjct:  462 ISITRDKTDYFWYLTDITISPDEKFLTG-EDPLLTIGSAGHALHVFVNGQLAGTAYGSLEKPKLTFSQKIKLHAGVNKLALLSTAAGLPNVGVHYETWNTGVLGPVTLNGVNSGTWDMTKWKWSYKIGTKGEALSVHTLAGSSTVEWKEGSLVAK-KQPLTWYKSTFDSPTGNEPLALDMNTMGKGQMWINGQNIGR 656          

HSP 2 Score: 30.4166 bits (67), Expect = 5.950e-65
Identity = 14/30 (46.67%), Postives = 19/30 (63.33%), Query Frame = 1
Query:  577 GRA*GGYWMAY-AKGDCKTCSYAGDISPYK 663
            G+  G +W AY A+G C+ CSYAG  +  K
Sbjct:  651 GQNIGRHWPAYTARGKCERCSYAGTFTEKK 680          
BLAST of CF417392 vs. ExPASy Swiss-Prot
Match: BGAL_MALDO (Beta-galactosidase OS=Malus domestica PE=1 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 2.833e-64
Identity = 116/205 (56.59%), Postives = 152/205 (74.15%), Query Frame = 3
Query:    3 INITRDTSDYLWYMTSVEISSSESFLRGGQKPTLTVESAGHAVHVFINGQFLGSAFGTRENRRFTFSGPANLRAGINKIALLSIAVGLPNVGLHYETWETGVRGAVVLHGLDHGNKDLTWQKWSYQVGLKGEAMNLVSPSEATSVDWTRGSLAAQGQQSLKWYKAYFDAPAGNEPLALDLRGMGKGQVWINGQSIGRILDGLCKR 617
            INITRDT+DYLWYMT + I S E+FL+ G+ P LT+ SAGHA++VFINGQ  G+ +G+ EN + +FS   NLR+GINK+ALLSI+VGLPNVG H+ETW  GV G + L GL+ G  D++  KW+Y+ GLKGEA+ L + + ++SV+W  G   A+ +Q L WYKA F+AP G+ PLALD+  MGKGQ+WINGQS+GR   G   R
Sbjct:  458 INITRDTTDYLWYMTDITIGSDEAFLKNGKSPLLTIFSAGHALNVFINGQLSGTVYGSLENPKLSFSQNVNLRSGINKLALLSISVGLPNVGTHFETWNAGVLGPITLKGLNSGTWDMSGWKWTYKTGLKGEALGLHTVTGSSSVEWVEGPSMAE-KQPLTWYKATFNAPPGDAPLALDMGSMGKGQIWINGQSVGRHWPGYIAR 661          
BLAST of CF417392 vs. ExPASy Swiss-Prot
Match: BGAL_ASPOF (Beta-galactosidase OS=Asparagus officinalis PE=2 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 1.190e-62
Identity = 114/197 (57.87%), Postives = 149/197 (75.63%), Query Frame = 3
Query:    3 INITRDTSDYLWYMTSVEISSSESFLRGGQKPTLTVESAGHAVHVFINGQFLGSAFGTRENRRFTFSGPANLRAGINKIALLSIAVGLPNVGLHYETWETGVRGAVVLHGLDHGNKDLTWQKWSYQVGLKGEAMNLVSPSEATSVDWTRGSLAAQGQQSLKWYKAYFDAPAGNEPLALDLRGMGKGQVWINGQSIGR 593
            ++ T D SDYLWY T V+I+ +E FL+ G+ P LTV SAGHAVHVFINGQ  G+A+G+ +N + T+SG A L AG NKI++LS++VGLPNVG H+ETW TGV G V L GL+ G +DL+ QKW+YQ+GL GE ++L S + +++V+W      A  +Q L WYK +F+AP GNEPLALD+  MGKGQ+WINGQSIGR
Sbjct:  457 LSTTWDRSDYLWYTTYVDIAKNEEFLKTGKYPYLTVMSAGHAVHVFINGQLSGTAYGSLDNPKLTYSGSAKLWAGSNKISILSVSVGLPNVGNHFETWNTGVLGPVTLTGLNEGKRDLSLQKWTYQIGLHGETLSLHSLTGSSNVEWGE----ASQKQPLTWYKTFFNAPPGNEPLALDMNTMGKGQIWINGQSIGR 649          
BLAST of CF417392 vs. ExPASy Swiss-Prot
Match: BGAL2_ORYSJ (Beta-galactosidase 2 OS=Oryza sativa subsp. japonica GN=Os01g0580200 PE=2 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 2.651e-62
Identity = 112/201 (55.72%), Postives = 146/201 (72.64%), Query Frame = 3
Query:    3 INITRDTSDYLWYMTSVEISSSESFLRGGQKPTLTVESAGHAVHVFINGQFLGSAFGTRENRRFTFSGPANLRAGINKIALLSIAVGLPNVGLHYETWETGVRGAVVLHGLDHGNKDLTWQKWSYQVGLKGEAMNLVSPSEATSVDWTRGSLAAQGQQSLKWYKAYFDAPAGNEPLALDLRGMGKGQVWINGQSIGRILDG 605
            IN+TRD +DYLWY T V+++  E FL  G+   LTV SAGHA+H+FINGQ  G+ +G+ ++ + T++G   L AG N I+ LSIAVGLPNVG H+ETW  G+ G V L GL+ G +DLTWQKW+YQVGLKGE+M+L S S +++V+W         +Q L WYKA+F+AP G+EPLALD+  MGKGQ+WINGQ IGR   G
Sbjct:  457 INVTRDNTDYLWYTTYVDVAQDEQFLSNGENLKLTVMSAGHALHIFINGQLKGTVYGSVDDPKLTYTGNVKLWAGSNTISCLSIAVGLPNVGEHFETWNAGILGPVTLDGLNEGRRDLTWQKWTYQVGLKGESMSLHSLSGSSTVEWGE----PVQKQPLTWYKAFFNAPDGDEPLALDMSSMGKGQIWINGQGIGRYWPG 653          
BLAST of CF417392 vs. ExPASy Swiss-Prot
Match: BGAL4_ARATH (Beta-galactosidase 4 OS=Arabidopsis thaliana GN=BGAL4 PE=1 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 2.244e-61
Identity = 111/197 (56.35%), Postives = 147/197 (74.62%), Query Frame = 3
Query:    3 INITRDTSDYLWYMTSVEISSSESFLRGGQKPTLTVESAGHAVHVFINGQFLGSAFGTRENRRFTFSGPANLRAGINKIALLSIAVGLPNVGLHYETWETGVRGAVVLHGLDHGNKDLTWQKWSYQVGLKGEAMNLVSPSEATSVDWTRGSLAAQGQQSLKWYKAYFDAPAGNEPLALDLRGMGKGQVWINGQSIGR 593
            I++T D SDY WY+T + I S E+FL+ G  P LTV SAGHA+HVF+NGQ  G+A+G  ++ + TFS    L AG+NKIALLS+AVGLPNVG H+E W  GV G V L G++ G  D++  KWSY++G+KGEA++L + +E++ V WT+GS  A+ +Q L WYK+ F  PAGNEPLALD+  MGKGQVWING++IGR
Sbjct:  460 ISMTWDKSDYFWYITDITIGSGETFLKTGDSPLLTVMSAGHALHVFVNGQLSGTAYGGLDHPKLTFSQKIKLHAGVNKIALLSVAVGLPNVGTHFEQWNKGVLGPVTLKGVNSGTWDMSKWKWSYKIGVKGEALSLHTNTESSGVRWTQGSFVAK-KQPLTWYKSTFATPAGNEPLALDMNTMGKGQVWINGRNIGR 655          
The following BLAST results are available for this feature:
BLAST of CF417392 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
BGAL5_ARATH1.325e-9476.14Beta-galactosidase 5 OS=Arabidopsis thaliana GN=BG... [more]
BGAL5_ORYSJ1.495e-8168.27Beta-galactosidase 5 OS=Oryza sativa subsp. japoni... [more]
BGAL3_ARATH4.809e-8067.51Beta-galactosidase 3 OS=Arabidopsis thaliana GN=BG... [more]
BGAL_SOLLC8.222e-7265.99Beta-galactosidase OS=Solanum lycopersicum PE=1 SV... [more]
BGAL1_ARATH1.313e-6962.94Beta-galactosidase 1 OS=Arabidopsis thaliana GN=BG... [more]
BGA12_ARATH5.950e-6556.85Beta-galactosidase 12 OS=Arabidopsis thaliana GN=B... [more]
BGAL_MALDO2.833e-6456.59Beta-galactosidase OS=Malus domestica PE=1 SV=1[more]
BGAL_ASPOF1.190e-6257.87Beta-galactosidase OS=Asparagus officinalis PE=2 S... [more]
BGAL2_ORYSJ2.651e-6255.72Beta-galactosidase 2 OS=Oryza sativa subsp. japoni... [more]
BGAL4_ARATH2.244e-6156.35Beta-galactosidase 4 OS=Arabidopsis thaliana GN=BG... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-322 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_G01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417392 ID=CF417392; Name=CF417392; organism=Citrus sinensis; type=EST; length=687bp
AGATAAATATCACTAGAGATACTAGTGACTATCTATGGTACATGACCAGT
GTTGAAATTAGTTCTTCAGAATCATTTCTGCGAGGTGGCCAAAAACCCAC
TCTCACCGTGGAATCAGCTGGCCATGCTGTTCATGTCTTCATCAATGGGC
AGTTTTTGGGGTCAGCGTTTGGGACAAGGGAGAACAGAAGGTTTACTTTT
TCAGGACCAGCCAACCTACGTGCTGGAATAAATAAGATTGCACTCCTCAG
CATAGCCGTTGGATTACCTAATGTTGGATTGCATTATGAGACATGGGAAA
CAGGAGTTCGGGGTGCAGTCGTGCTTCATGGTCTGGACCATGGAAATAAG
GACTTAACATGGCAGAAGTGGTCATACCAGGTTGGATTAAAAGGGGAGGC
AATGAATTTAGTATCGCCAAGTGAAGCCACATCTGTTGATTGGACACGAG
GCTCACTCGCTGCTCAAGGCCAGCAGTCTTTGAAATGGTACAAGGCATAT
TTTGATGCACCTGCAGGAAATGAGCCTCTGGCTTTGGACTTGCGAGGTAT
GGGTAAGGGTCAAGTTTGGATCAATGGGCAGAGCATAGGGAGGATACTGG
ATGGCTTATGCAAAAGGTGACTGCAAAACCTGCAGTTATGCTGGGGACAT
TTCGCCCTATAAATTGCCCAACGTCGATGTGGCCATC
back to top