CF417395

Overview
NameCF417395
Unique NameCF417395
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length448
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF417395 vs. ExPASy Swiss-Prot
Match: APH1_ARATH (Gamma-secretase subunit APH1-like OS=Arabidopsis thaliana GN=At2g31440 PE=2 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 1.230e-28
Identity = 61/90 (67.78%), Postives = 68/90 (75.56%), Query Frame = 3 
Query:    3 QMPFFLISAIIALAFVTIHTFSMVIAFNGYAEGNTTDQYFVPVVHLVAGMVTLVNFASGGCVVGXXXXXXXXXXXXXHCGKMVWRRLTAS 272
            ++PFFLISAIIALAFVTIHTFSMVIAF GYA+GN  DQ  VPV+HL AGM+TLVNFAS GCV+G             HCGKMVW+RL  S
Sbjct:  153 KVPFFLISAIIALAFVTIHTFSMVIAFEGYAKGNKVDQIIVPVIHLTAGMLTLVNFASEGCVIGVPLLYLVASLTLVHCGKMVWQRLLES 242
The following BLAST results are available for this feature:
BLAST of CF417395 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
APH1_ARATH1.230e-2867.78Gamma-secretase subunit APH1-like OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-325 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_G04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417395 ID=CF417395; Name=CF417395; organism=Citrus sinensis; type=EST; length=448bp
CCCAGATGCCCTTTTTTCTTATTTCTGCAATCATTGCTCTTGCATTTGTT
ACAATTCACACTTTCTCAATGGTCATTGCATTTAATGGGTATGCTGAAGG
GAATACAACGGACCAGTATTTTGTTCCTGTTGTTCATCTTGTGGCCGGAA
TGGTGACATTGGTAAATTTTGCATCTGGTGGTTGTGTCGTTGGGATTCCT
CTGCTCTATATCCTGGCAAGCTTGATCCTGTTACACTGTGGGAAAATGGT
GTGGAGAAGATTAACAGCAAGCTGAAGCATGCAGGGTAATTCTTAGTGAT
CCATAGCAATTGGAAAGTCACTCTCAAAATTTATAGCTCAGCTGAACATG
TAATGTACTACACAAATGTATCTTGGAAGGTTCTCAAAACCATTTATTTT
GTGAACTGACATCCATACTAATTCAATTCAAACGGCTGTTTAAATTTT
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