CF417400

Overview
NameCF417400
Unique NameCF417400
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length456
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9291 contig Csv1_Contig9291:977..1432. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417400 vs. ExPASy Swiss-Prot
Match: CHS2_CITSI (Chalcone synthase 2 OS=Citrus sinensis GN=CHS2 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.042e-33
Identity = 73/83 (87.95%), Postives = 73/83 (87.95%), Query Frame = 2
Query:    2 ILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPIKA 250
            ILDQVES          ATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPIKA
Sbjct:  309 ILDQVESKLGLKGEKLKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPIKA 391          
BLAST of CF417400 vs. ExPASy Swiss-Prot
Match: CHSY_PETCR (Chalcone synthase OS=Petroselinum crispum GN=CHS PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.408e-30
Identity = 66/80 (82.50%), Postives = 68/80 (85.00%), Query Frame = 2
Query:    2 ILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVP 241
            ILDQVE           ATRQVLS+YGNMSSACVLFILDEMRKKS+EE KATTGEGLDWGVLFGFGPGLTVETVVLHSVP
Sbjct:  314 ILDQVELKLGLKEEKMRATRQVLSDYGNMSSACVLFILDEMRKKSIEEGKATTGEGLDWGVLFGFGPGLTVETVVLHSVP 393          
BLAST of CF417400 vs. ExPASy Swiss-Prot
Match: CHS2_DAUCA (Chalcone synthase 2 OS=Daucus carota GN=CHS2 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 3.136e-30
Identity = 65/80 (81.25%), Postives = 68/80 (85.00%), Query Frame = 2
Query:    2 ILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVP 241
            ILDQVE           ATRQVLS+YGNMSSACVLFILDEMRKKS+EE KATTG+GLDWGVLFGFGPGLTVETVVLHSVP
Sbjct:  313 ILDQVELKLGLKEEKMRATRQVLSDYGNMSSACVLFILDEMRKKSIEEGKATTGDGLDWGVLFGFGPGLTVETVVLHSVP 392          
BLAST of CF417400 vs. ExPASy Swiss-Prot
Match: CHS2_RUTGR (Chalcone synthase 2 OS=Ruta graveolens GN=CHS2 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 5.349e-30
Identity = 66/83 (79.52%), Postives = 68/83 (81.93%), Query Frame = 2
Query:    2 ILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPIKA 250
            ILDQVE+          ATRQVLSEYGNMSSACVLFILDEMRKK  EE +ATTGEGLDWGVLFGFGPGLTVETVVL SVPI A
Sbjct:  311 ILDQVEAKLGLKEEKLRATRQVLSEYGNMSSACVLFILDEMRKKCAEEGRATTGEGLDWGVLFGFGPGLTVETVVLRSVPINA 393          
BLAST of CF417400 vs. ExPASy Swiss-Prot
Match: CHS1_RUTGR (Chalcone synthase 1 OS=Ruta graveolens GN=CHS1 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 5.349e-30
Identity = 66/83 (79.52%), Postives = 68/83 (81.93%), Query Frame = 2
Query:    2 ILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPIKA 250
            ILDQVE+          ATRQVLSEYGNMSSACVLFILDEMRK   EE +ATTGEGLDWGVLFGFGPGLTVETVVL SVPIKA
Sbjct:  311 ILDQVEAKLGLKEEKLRATRQVLSEYGNMSSACVLFILDEMRKNCAEEGRATTGEGLDWGVLFGFGPGLTVETVVLRSVPIKA 393          
BLAST of CF417400 vs. ExPASy Swiss-Prot
Match: CHS4_SORBI (Chalcone synthase 4 OS=Sorghum bicolor GN=CHS4 PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.192e-29
Identity = 64/81 (79.01%), Postives = 68/81 (83.95%), Query Frame = 2
Query:    2 ILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 244
            ILDQVE+          ATR VLSEYGNMSSACVLFILDEMRK+S E+ +ATTGEGLDWGVLFGFGPGLTVETVVLHSVPI
Sbjct:  313 ILDQVEAKVGLKKERMRATRHVLSEYGNMSSACVLFILDEMRKRSAEDGQATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 393          
BLAST of CF417400 vs. ExPASy Swiss-Prot
Match: CHS2_MAIZE (Chalcone synthase C2 OS=Zea mays GN=C2 PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.192e-29
Identity = 64/81 (79.01%), Postives = 68/81 (83.95%), Query Frame = 2
Query:    2 ILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 244
            ILDQVE+          ATR VLSEYGNMSSACVLFILDEMRK+S E+ +ATTGEGLDWGVLFGFGPGLTVETVVLHSVPI
Sbjct:  313 ILDQVEAKVGLDKARMRATRHVLSEYGNMSSACVLFILDEMRKRSAEDGQATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 393          
BLAST of CF417400 vs. ExPASy Swiss-Prot
Match: CHSY_ORYSJ (Chalcone synthase OS=Oryza sativa subsp. japonica GN=CHS PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.556e-29
Identity = 64/83 (77.11%), Postives = 68/83 (81.93%), Query Frame = 2
Query:    2 ILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPIKA 250
            ILDQVE+          ATR VLSEYGNMSSACVLFILDEMRK+S E+  ATTGEG+DWGVLFGFGPGLTVETVVLHSVPI A
Sbjct:  312 ILDQVEAKVGLDKERMRATRHVLSEYGNMSSACVLFILDEMRKRSAEDGHATTGEGMDWGVLFGFGPGLTVETVVLHSVPITA 394          
BLAST of CF417400 vs. ExPASy Swiss-Prot
Match: CHSY_ORYSI (Chalcone synthase OS=Oryza sativa subsp. indica GN=CHS PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.556e-29
Identity = 64/83 (77.11%), Postives = 68/83 (81.93%), Query Frame = 2
Query:    2 ILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPIKA 250
            ILDQVE+          ATR VLSEYGNMSSACVLFILDEMRK+S E+  ATTGEG+DWGVLFGFGPGLTVETVVLHSVPI A
Sbjct:  312 ILDQVEAKVGLDKERMRATRHVLSEYGNMSSACVLFILDEMRKRSAEDGHATTGEGMDWGVLFGFGPGLTVETVVLHSVPITA 394          
BLAST of CF417400 vs. ExPASy Swiss-Prot
Match: CHS7_SORBI (Chalcone synthase 7 OS=Sorghum bicolor GN=CHS7 PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.556e-29
Identity = 64/81 (79.01%), Postives = 67/81 (82.72%), Query Frame = 2
Query:    2 ILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 244
            ILDQVE+          ATR VLSEYGNMSSACVLFILDEMRK+S EE +ATTGEG DWGVLFGFGPGLTVETVVLHSVPI
Sbjct:  313 ILDQVEAKVGLKKERMRATRHVLSEYGNMSSACVLFILDEMRKRSAEEGQATTGEGFDWGVLFGFGPGLTVETVVLHSVPI 393          
The following BLAST results are available for this feature:
BLAST of CF417400 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 133
Match NameE-valueIdentityDescription
CHS2_CITSI1.042e-3387.95Chalcone synthase 2 OS=Citrus sinensis GN=CHS2 PE=... [more]
CHSY_PETCR1.408e-3082.50Chalcone synthase OS=Petroselinum crispum GN=CHS P... [more]
CHS2_DAUCA3.136e-3081.25Chalcone synthase 2 OS=Daucus carota GN=CHS2 PE=2 ... [more]
CHS2_RUTGR5.349e-3079.52Chalcone synthase 2 OS=Ruta graveolens GN=CHS2 PE=... [more]
CHS1_RUTGR5.349e-3079.52Chalcone synthase 1 OS=Ruta graveolens GN=CHS1 PE=... [more]
CHS4_SORBI1.192e-2979.01Chalcone synthase 4 OS=Sorghum bicolor GN=CHS4 PE=... [more]
CHS2_MAIZE1.192e-2979.01Chalcone synthase C2 OS=Zea mays GN=C2 PE=3 SV=1[more]
CHSY_ORYSJ1.556e-2977.11Chalcone synthase OS=Oryza sativa subsp. japonica ... [more]
CHSY_ORYSI1.556e-2977.11Chalcone synthase OS=Oryza sativa subsp. indica GN... [more]
CHS7_SORBI1.556e-2979.01Chalcone synthase 7 OS=Sorghum bicolor GN=CHS7 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-330 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_G09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417400 ID=CF417400; Name=CF417400; organism=Citrus sinensis; type=EST; length=456bp
AATTCTGGACCAAGTGGAGTCTAAACTGGGCCTCAAAGGGGAGAAGCTGA
AGGCCACACGTCAAGTGTTGAGTGAGTACGGTAACATGTCAAGCGCTTGT
GTCTTGTTCATCCTTGACGAGATGAGAAAGAAGTCTGTTGAGGAAGCGAA
AGCCACCACCGGCGAAGGGCTTGATTGGGGTGTGCTGTTCGGGTTCGGGC
CGGGGCTCACCGTCGAGACCGTTGTGCTGCACAGTGTCCCCATCAAAGCT
TGAAGTGAGAACTCCATCAGTATGTTTAGTAGTTCAGTAACTTTATGTTG
TATGCTTTCACAGTTGAGTTATTGGTTGATCGTGTGAAGGTTTAGTTTTG
TCAATTGAGTTTAAGGCATCGTGCCTTTTCTCTTATGACGTCACCAAACC
TGGGCAACGCTTTGTGTTTATGCATAAATTCTTGGGAATTTGAGAAAGTA
GTAAAT
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