CF417408
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF417408 vs. ExPASy Swiss-Prot
Match: G3PA_PEA (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Pisum sativum GN=GAPA PE=2 SV=2) HSP 1 Score: 225.328 bits (573), Expect = 3.511e-97 Identity = 113/142 (79.58%), Postives = 126/142 (88.73%), Query Frame = 3 Query: 24 MASATLSVAKSALQGNGKGFSEFSGLRNSAS-LPFGRKSSDDFHSVIALQTSALGSSSSGYRKVAAQAK-LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKV 443 MASAT SVAK A++ NGKGFSEFSGLRNS+ LPF RKSSDDFHS++ QT+A+GSS + + +AK LKVAINGFGRIGRNFLRCWHGRKDSPL+V+AINDTGGVKQASHLLKYDSTLGIF+ADVKPVGTDGISVDGKV Sbjct: 1 MASATFSVAKPAIKANGKGFSEFSGLRNSSRHLPFSRKSSDDFHSLVTFQTNAVGSSGGHKKSLVVEAKQLKVAINGFGRIGRNFLRCWHGRKDSPLDVIAINDTGGVKQASHLLKYDSTLGIFDADVKPVGTDGISVDGKV 142 HSP 2 Score: 150.984 bits (380), Expect = 3.511e-97 Identity = 73/85 (85.88%), Postives = 78/85 (91.76%), Query Frame = 1 Query: 445 IQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCL 699 I+VVS+RNP NLPW +LGIDLVIEGTGVFVDREGAG+HI AGAKKVLITAPGKGDIPTYVVGVNADAY + IISNASCTTNCL Sbjct: 143 IKVVSDRNPANLPWKELGIDLVIEGTGVFVDREGAGRHITAGAKKVLITAPGKGDIPTYVVGVNADAYTHADDIISNASCTTNCL 227
BLAST of CF417408 vs. ExPASy Swiss-Prot
Match: G3PA_ARATH (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Arabidopsis thaliana GN=GAPA PE=1 SV=3) HSP 1 Score: 196.823 bits (499), Expect = 6.034e-91 Identity = 104/142 (73.24%), Postives = 118/142 (83.10%), Query Frame = 3 Query: 24 MASATLSVAKSALQGNGKGFSEFSGLRNS-ASLPFGRK-SSDDFHSVIALQTSALGSSSSGYRKVAAQAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKV 443 MAS T SV K GF+EFSGLR+S ASLPFG+K SSD+F S+++ QTSA+GSS GYRK +AKLKVAINGFGRIGRNFLRCWHGRKDSPL+++AINDTGGVKQASHLLKYDSTLGIF+ADVKP G ISVDGK+ Sbjct: 1 MASVTFSVPK--------GFTEFSGLRSSSASLPFGKKLSSDEFVSIVSFQTSAMGSSG-GYRKGVTEAKLKVAINGFGRIGRNFLRCWHGRKDSPLDIIAINDTGGVKQASHLLKYDSTLGIFDADVKPSGETAISVDGKI 133 HSP 2 Score: 158.688 bits (400), Expect = 6.034e-91 Identity = 76/85 (89.41%), Postives = 80/85 (94.12%), Query Frame = 1 Query: 445 IQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCL 699 IQVVSNRNP LPW +LGID+VIEGTGVFVDREGAGKHI+AGAKKV+ITAPGKGDIPTYVVGVNADAY DEPIISNASCTTNCL Sbjct: 134 IQVVSNRNPSLLPWKELGIDIVIEGTGVFVDREGAGKHIEAGAKKVIITAPGKGDIPTYVVGVNADAYSHDEPIISNASCTTNCL 218
BLAST of CF417408 vs. ExPASy Swiss-Prot
Match: G3PB_SPIOL (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Spinacia oleracea GN=GAPB PE=1 SV=1) HSP 1 Score: 142.895 bits (359), Expect = 3.850e-66 Identity = 73/119 (61.34%), Postives = 91/119 (76.47%), Query Frame = 3 Query: 84 SEFSGLRNSASLPFGRKSSDDFHSVIALQTSALGSSSSGYRKVAAQAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGK 440 ++FSGLR+S S+ F R++S FH VIA Q + + ++ R AKLKVAINGFGRIGRNFLRCWHGRKDSPL+VV +ND+GGVK A+HLLKYDS LG F+ADVK + + S+DGK Sbjct: 40 ADFSGLRSSNSVTFTREAS--FHDVIAAQLTTKPTGAAPVRGETV-AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKSATHLLKYDSILGTFKADVKIIDNETFSIDGK 155 HSP 2 Score: 129.798 bits (325), Expect = 3.850e-66 Identity = 67/89 (75.28%), Postives = 74/89 (83.15%), Query Frame = 1 Query: 439 RSIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKG-DIPTYVVGVNADAYKPD-EPIISNASCTTNCL 699 + I+VVSNR+P+ LPW +LGID+VIEGTGVFVD GAGKHIQAGAKKV+ITAP KG DIPTYVVGVN Y D IISNASCTTNCL Sbjct: 155 KPIKVVSNRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGSDIPTYVVGVNEKDYGHDVANIISNASCTTNCL 243
BLAST of CF417408 vs. ExPASy Swiss-Prot
Match: G3PB_TOBAC (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic (Fragment) OS=Nicotiana tabacum GN=GAPB PE=2 SV=1) HSP 1 Score: 140.198 bits (352), Expect = 9.309e-65 Identity = 74/119 (62.18%), Postives = 88/119 (73.95%), Query Frame = 3 Query: 84 SEFSGLRNSASLPFGRKSSDDFHSVIALQTSALGSSSSGYRKVAAQAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGK 440 +EF+GLR+S + F K S F V++ Q + + S+ K AKLKVAINGFGRIGRNFLRCWHGRKDSPL+VV +ND+GGVK ASHLLKYDS LG F+ADVK V + ISVDGK Sbjct: 9 AEFAGLRSSGCVTFSNKESS-FFDVVSAQLTPKTTRSTPV-KGETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSMLGTFKADVKIVDNETISVDGK 125 HSP 2 Score: 127.872 bits (320), Expect = 9.309e-65 Identity = 65/89 (73.03%), Postives = 74/89 (83.15%), Query Frame = 1 Query: 439 RSIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKG-DIPTYVVGVNADAYKPD-EPIISNASCTTNCL 699 + I+VVS+R+P+ LPW +LGID+VIEGTGVFVD GAGKHIQAGAKKV+ITAP KG DIPTYVVGVN Y + IISNASCTTNCL Sbjct: 125 KHIKVVSSRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEQDYSHEVADIISNASCTTNCL 213
BLAST of CF417408 vs. ExPASy Swiss-Prot
Match: G3PB_PEA (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Pisum sativum GN=GAPB PE=2 SV=2) HSP 1 Score: 140.198 bits (352), Expect = 2.063e-64 Identity = 69/119 (57.98%), Postives = 91/119 (76.47%), Query Frame = 3 Query: 87 EFSGLRNSASLPFGRKSSDD-FHSVIALQTSALGSSSSGYRKVAAQAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGK 440 EFSGL++++ + + + D F+ V+A Q ++ + S+ + V AKLKVAINGFGRIGRNFLRCWHGRKDSPLEV+ +ND+GGVK ASHLLKYDS LG F+A+VK + + I+VDGK Sbjct: 39 EFSGLKSTSCISYVHSARDSSFYDVVAAQLTSKANGSTAVKGVTV-AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVIVVNDSGGVKNASHLLKYDSMLGTFKAEVKILNNETITVDGK 156 HSP 2 Score: 126.716 bits (317), Expect = 2.063e-64 Identity = 64/89 (71.91%), Postives = 74/89 (83.15%), Query Frame = 1 Query: 439 RSIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKG-DIPTYVVGVNADAYKPD-EPIISNASCTTNCL 699 + I+VVS+R+P+ LPW +LGID+VIEGTGVFVD GAGKHIQAGAKKV+ITAP KG DIPTYV+GVN Y + IISNASCTTNCL Sbjct: 156 KPIKVVSSRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVIGVNEQDYGHEVADIISNASCTTNCL 244
BLAST of CF417408 vs. ExPASy Swiss-Prot
Match: G3PA_CHLRE (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Chlamydomonas reinhardtii GN=GAPA PE=1 SV=1) HSP 1 Score: 129.028 bits (323), Expect = 2.233e-60 Identity = 62/88 (70.45%), Postives = 74/88 (84.09%), Query Frame = 1 Query: 439 RSIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKG-DIPTYVVGVNADAYKPDEPIISNASCTTNCL 699 + I++VS+R+P+ LPW ++ IDLVIEGTGVF+D+ GAGKHIQAGA KVLITAP K DIPT+VVGVN YK + PIISNASCTTNCL Sbjct: 108 KQIKIVSSRDPLQLPWKEMNIDLVIEGTGVFIDKVGAGKHIQAGASKVLITAPAKDKDIPTFVVGVNEGDYKHEYPIISNASCTTNCL 195 HSP 2 Score: 124.405 bits (311), Expect = 2.233e-60 Identity = 66/98 (67.35%), Postives = 75/98 (76.53%), Query Frame = 3 Query: 171 TSALGSSSSGYRKVAAQA--------KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGK 440 T + SS SG R AA+A K++VAINGFGRIGRNFLRCWHGR+++ L+VVAIND+GGVKQASHLLKYDSTLG F ADVK V ISVDGK Sbjct: 11 TGSAVSSKSGVRAKAARAVVDVRAEKKIRVAINGFGRIGRNFLRCWHGRQNTLLDVVAINDSGGVKQASHLLKYDSTLGTFAADVKIVDDSHISVDGK 108
BLAST of CF417408 vs. ExPASy Swiss-Prot
Match: G3PA_GRAVE (Glyceraldehyde-3-phosphate dehydrogenase, chloroplastic OS=Gracilaria verrucosa GN=GAPA PE=2 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 4.439e-55 Identity = 60/89 (67.42%), Postives = 74/89 (83.15%), Query Frame = 1 Query: 439 RSIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGD-IPTYVVGVNADAYKPDE-PIISNASCTTNCL 699 ++I+VVSNRNP+ LPW ++ ID+V+E TGVFVD GAGKHIQAGAKKVLITAPGKG+ + T+VVGVN Y D+ I+SNASCTTNC+ Sbjct: 150 KTIKVVSNRNPLELPWKEMEIDIVVEATGVFVDAVGAGKHIQAGAKKVLITAPGKGEGVGTFVVGVNDHLYSHDKFDIVSNASCTTNCM 238 HSP 2 Score: 113.62 bits (283), Expect = 4.439e-55 Identity = 67/147 (45.58%), Postives = 90/147 (61.22%), Query Frame = 3 Query: 24 MASATLSVAKSALQGNGKGFSEFSGLR---NSASLPFGRKSS-----DDFHSVIALQTSALGSSSSGYRKVAAQAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGK 440 ++S + +KSA+ F++FSGL+ N+A L + S D + + +G+ + A K++VAINGFGRIGRNF+RCW GR DS ++VV INDT GVK ASHLLKYDS LG F++DV G D I+VDGK Sbjct: 7 VSSVFSTSSKSAVCSGRSSFAQFSGLKKVNNTARLQTAEQGSAFGGVSDANDAFFNAVNTMGAPARTSN--APSMKVRVAINGFGRIGRNFIRCWAGRTDSNMDVVCINDTSGVKTASHLLKYDSILGTFDSDV-VAGEDSITVDGK 150
BLAST of CF417408 vs. ExPASy Swiss-Prot
Match: G3PA_SCEVA (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic (Fragment) OS=Scenedesmus vacuolatus GN=GapA PE=2 SV=1) HSP 1 Score: 134.42 bits (337), Expect = 1.676e-54 Identity = 66/88 (75.00%), Postives = 75/88 (85.23%), Query Frame = 1 Query: 439 RSIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKG-DIPTYVVGVNADAYKPDEPIISNASCTTNCL 699 +SI+VVS+R+P LPWG++ IDLVIEGTGVF+D GA KHI+AGAKKVLITAP KG DIPTYVVGVNA YK + IISNASCTTNCL Sbjct: 66 KSIRVVSSRDPTKLPWGEMEIDLVIEGTGVFIDTPGASKHIEAGAKKVLITAPAKGSDIPTYVVGVNAHDYKHSDAIISNASCTTNCL 153 HSP 2 Score: 99.3673 bits (246), Expect = 1.676e-54 Identity = 50/66 (75.76%), Postives = 56/66 (84.85%), Query Frame = 3 Query: 243 NGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGK 440 NGFGRIGRNFLRC R++S LEV+AIND+GGVKQASHLLKYDSTLG F+ADVK V ISV+GK Sbjct: 1 NGFGRIGRNFLRCLETRQNSLLEVIAINDSGGVKQASHLLKYDSTLGKFDADVKIVDDGHISVNGK 66
BLAST of CF417408 vs. ExPASy Swiss-Prot
Match: G3PA_CHOCR (Glyceraldehyde-3-phosphate dehydrogenase, chloroplastic OS=Chondrus crispus GN=GAPA PE=2 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 2.179e-54 Identity = 60/89 (67.42%), Postives = 74/89 (83.15%), Query Frame = 1 Query: 439 RSIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGD-IPTYVVGVNADAYKPDE-PIISNASCTTNCL 699 ++I++VSNRNP+ LPW ++ ID+V+E TGVFVD GAGKHI+AGAKKVLITAPGKGD I T+VVGVN Y D+ I+SNASCTTNC+ Sbjct: 148 KTIKIVSNRNPLQLPWKEMNIDIVVEATGVFVDAPGAGKHIEAGAKKVLITAPGKGDGIGTFVVGVNEKDYSHDKYDIVSNASCTTNCM 236 HSP 2 Score: 109.768 bits (273), Expect = 2.179e-54 Identity = 67/148 (45.27%), Postives = 89/148 (60.14%), Query Frame = 3 Query: 24 MASATLSVAKSALQGNGKG-FSEFSGLRN---SASLPFGRKSS-----DDFHSVIALQTSALGSSSSGYRKVAAQAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGK 440 +A+ + S Q G+ F++FSG++ S+ L + S D + + S + +++ G K++VAINGFGRIGRNF+RCW GR DS +EVV INDT GVK ASHLLKYDS LG F+ADV G D ISV+GK Sbjct: 7 VATVRATTKSSVCQVQGRSTFAQFSGMKKVNQSSRLQPAQSGSAFGGYSDANDAFYTRVSGIVAATFG-----PTMKVRVAINGFGRIGRNFIRCWAGRSDSNMEVVCINDTSGVKTASHLLKYDSILGTFDADVS-AGEDTISVNGK 148
BLAST of CF417408 vs. ExPASy Swiss-Prot
Match: G3PA_TOBAC (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic (Fragment) OS=Nicotiana tabacum GN=GAPA PE=2 SV=1) HSP 1 Score: 207.994 bits (528), Expect = 4.004e-53 Identity = 105/148 (70.95%), Postives = 121/148 (81.76%), Query Frame = 3 Query: 54 SALQGNGKGFSEFSGLRNSASLPFGRKSSDDFHSVIALQTSALGSSSSGYRKVAAQAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVHPGCF*PQPRQSPLGGLG 497 S+LQ + KGFSEFSGLR S+++PFGRK++DD SV+A QTS +G +S ++ +AKLKVAINGFGRIGRNFLRCWHGRKDSPL+V+AINDTGGVKQASHLLKYDSTLGIF+ADVKPVGTDGISVDGKV P P G LG Sbjct: 2 SSLQVSNKGFSEFSGLRTSSAIPFGRKTNDDLLSVVAFQTSVIGGGNS--KRGVVEAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVIAINDTGGVKQASHLLKYDSTLGIFDADVKPVGTDGISVDGKVIQVVSDRNPVNLPWGDLG 147 HSP 2 Score: 171.4 bits (433), Expect = 4.153e-42 Identity = 82/85 (96.47%), Postives = 83/85 (97.65%), Query Frame = 1 Query: 445 IQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCL 699 IQVVS+RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNAD Y PDEPIISNASCTTNCL Sbjct: 130 IQVVSDRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADLYNPDEPIISNASCTTNCL 214 The following BLAST results are available for this feature:
BLAST of CF417408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 348
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417408 ID=CF417408; Name=CF417408; organism=Citrus sinensis; type=EST; length=701bpback to top |