CF417411

Overview
NameCF417411
Unique NameCF417411
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length409
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8698 contig Csv1_Contig8698:169..577. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417411 vs. ExPASy Swiss-Prot
Match: 12KD_FRAAN (Auxin-repressed 12.5 kDa protein OS=Fragaria ananassa PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.809e-19
Identity = 40/51 (78.43%), Postives = 46/51 (90.20%), Query Frame = 1
Query:   82 RKDNVWRSVFHPGSNLATRGIGAEVFDKPTHPNSPTVYDWLYSGETRSKHH 234
            RKDNVWRSVFHPGSNL+++ +G +VFD P  PNSPTVYDW+YSGETRSKHH
Sbjct:   61 RKDNVWRSVFHPGSNLSSKTMGNQVFDSP-QPNSPTVYDWMYSGETRSKHH 110          
The following BLAST results are available for this feature:
BLAST of CF417411 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
12KD_FRAAN9.809e-1978.43Auxin-repressed 12.5 kDa protein OS=Fragaria anana... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-341 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_H08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417411 ID=CF417411; Name=CF417411; organism=Citrus sinensis; type=EST; length=409bp
AAGTTCCAGAGGTCTCTGTCAATGCCAGCGAGTCCAGGGGCACCGTCGAC
GCCAGTGACGCCGACGACGCCGCTGTCGGCGCGTAAGGACAACGTGTGGA
GGAGCGTGTTTCACCCCGGTAGCAACCTTGCTACTAGGGGTATCGGTGCA
GAGGTCTTTGACAAGCCCACACATCCTAACTCTCCCACTGTTTATGACTG
GCTTTACAGTGGGGAGACTAGGAGCAAGCATCATCACTAGTGGATGATAC
GCTACAGCGATGTAAATGAATGTGATGGGTCACCAACTCACCGGATGAGT
TGCCTGTAGTCTGTAGATAGTGTCGTTTCGTTTTGGATTTCGCAACGTGT
CCTTGTCGTTTTGTTAATGCTATTTGTATTACGTGTCCTTCCTATCTAAA
GTTTGGTTT
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