CF417417

Overview
NameCF417417
Unique NameCF417417
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length352
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig453 contig Csv1_Contig453:1..351. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417417 vs. ExPASy Swiss-Prot
Match: NDUA9_RAT (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial (Fragment) OS=Rattus norvegicus GN=Ndufa9 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.991e-16
Identity = 39/56 (69.64%), Postives = 46/56 (82.14%), Query Frame = 1
Query:  184 GRSSVSGIIATVFGTTGFLGRYVVQQLAKMGSQVLVPFRGCEDDPRHLKLMGDLGQ 351
            GRSSVSG++ATVFG TGFLGRYVV  L +MGSQV++P+R    D  HL+LMGDLGQ
Sbjct:   40 GRSSVSGVVATVFGATGFLGRYVVNHLGRMGSQVIIPYRCDIYDTMHLRLMGDLGQ 95          
BLAST of CF417417 vs. ExPASy Swiss-Prot
Match: NDUA9_PANTR (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial OS=Pan troglodytes GN=NDUFA9 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.743e-15
Identity = 39/56 (69.64%), Postives = 46/56 (82.14%), Query Frame = 1
Query:  184 GRSSVSGIIATVFGTTGFLGRYVVQQLAKMGSQVLVPFRGCEDDPRHLKLMGDLGQ 351
            GRSSVSGI+ATVFG TGFLGRYVV  L +MGSQV++P+R  + D  HL+ MGDLGQ
Sbjct:   47 GRSSVSGIVATVFGATGFLGRYVVNHLGRMGSQVIIPYRCDKYDIMHLRPMGDLGQ 102          
BLAST of CF417417 vs. ExPASy Swiss-Prot
Match: NDUA9_HUMAN (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial OS=Homo sapiens GN=NDUFA9 PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 1.743e-15
Identity = 39/56 (69.64%), Postives = 46/56 (82.14%), Query Frame = 1
Query:  184 GRSSVSGIIATVFGTTGFLGRYVVQQLAKMGSQVLVPFRGCEDDPRHLKLMGDLGQ 351
            GRSSVSGI+ATVFG TGFLGRYVV  L +MGSQV++P+R  + D  HL+ MGDLGQ
Sbjct:   47 GRSSVSGIVATVFGATGFLGRYVVNHLGRMGSQVIIPYRCDKYDIMHLRPMGDLGQ 102          
BLAST of CF417417 vs. ExPASy Swiss-Prot
Match: NDUA9_GORGO (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial OS=Gorilla gorilla gorilla GN=NDUFA9 PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 1.743e-15
Identity = 39/56 (69.64%), Postives = 46/56 (82.14%), Query Frame = 1
Query:  184 GRSSVSGIIATVFGTTGFLGRYVVQQLAKMGSQVLVPFRGCEDDPRHLKLMGDLGQ 351
            GRSSVSGI+ATVFG TGFLGRYVV  L +MGSQV++P+R  + D  HL+ MGDLGQ
Sbjct:   47 GRSSVSGIVATVFGATGFLGRYVVNHLGRMGSQVIIPYRCDKYDIMHLRPMGDLGQ 102          
BLAST of CF417417 vs. ExPASy Swiss-Prot
Match: NDUA9_PONPY (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial OS=Pongo pygmaeus GN=NDUFA9 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.973e-15
Identity = 39/56 (69.64%), Postives = 45/56 (80.36%), Query Frame = 1
Query:  184 GRSSVSGIIATVFGTTGFLGRYVVQQLAKMGSQVLVPFRGCEDDPRHLKLMGDLGQ 351
            GRSSVSGI+ATVFG TGFLGRYVV  L +MGSQV++P+R    D  HL+ MGDLGQ
Sbjct:   47 GRSSVSGIVATVFGATGFLGRYVVNHLGRMGSQVIIPYRCDTYDIMHLRPMGDLGQ 102          
BLAST of CF417417 vs. ExPASy Swiss-Prot
Match: NDUA9_PONAB (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial OS=Pongo abelii GN=NDUFA9 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.973e-15
Identity = 39/56 (69.64%), Postives = 45/56 (80.36%), Query Frame = 1
Query:  184 GRSSVSGIIATVFGTTGFLGRYVVQQLAKMGSQVLVPFRGCEDDPRHLKLMGDLGQ 351
            GRSSVSGI+ATVFG TGFLGRYVV  L +MGSQV++P+R    D  HL+ MGDLGQ
Sbjct:   47 GRSSVSGIVATVFGATGFLGRYVVNHLGRMGSQVIIPYRCDTYDIMHLRPMGDLGQ 102          
BLAST of CF417417 vs. ExPASy Swiss-Prot
Match: NDUA9_MOUSE (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial OS=Mus musculus GN=Ndufa9 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.072e-15
Identity = 38/56 (67.86%), Postives = 45/56 (80.36%), Query Frame = 1
Query:  184 GRSSVSGIIATVFGTTGFLGRYVVQQLAKMGSQVLVPFRGCEDDPRHLKLMGDLGQ 351
            GRSSVSG++ATVFG TGFLGRYVV  L +MGSQV++P+R    D  HL+LMGD GQ
Sbjct:   47 GRSSVSGVVATVFGATGFLGRYVVNHLGRMGSQVIIPYRCDVYDIMHLRLMGDPGQ 102          
BLAST of CF417417 vs. ExPASy Swiss-Prot
Match: NDUA9_BOVIN (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial OS=Bos taurus GN=NDUFA9 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.072e-15
Identity = 40/56 (71.43%), Postives = 44/56 (78.57%), Query Frame = 1
Query:  184 GRSSVSGIIATVFGTTGFLGRYVVQQLAKMGSQVLVPFRGCEDDPRHLKLMGDLGQ 351
            GRSSVSGI+ATVFG TGFLGRYVV  L +MGSQV+VP R    D  HL+ MGDLGQ
Sbjct:   47 GRSSVSGIVATVFGATGFLGRYVVNHLGRMGSQVIVPHRCEPYDTMHLRPMGDLGQ 102          
BLAST of CF417417 vs. ExPASy Swiss-Prot
Match: NDUA9_NEUCR (NADH-ubiquinone oxidoreductase 40 kDa subunit, mitochondrial OS=Neurospora crassa GN=nuo-40 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 8.952e-12
Identity = 38/79 (48.10%), Postives = 52/79 (65.82%), Query Frame = 1
Query:  115 IGDLDLLRSPLPVPATLFVRALVGRSSVSGIIATVFGTTGFLGRYVVQQLAKMGSQVLVPFRGCEDDPRHLKLMGDLGQ 351
            I D+ + R+  P+     +R   GRSS+ G  ATVFG TG LGRY+V +LA+ G  V++PFR  E + RHLK+ GDLG+
Sbjct:   27 ISDVTITRTGKPI-----IRNQGGRSSLGGHTATVFGATGQLGRYIVNRLARQGCTVVIPFRD-EYNKRHLKVTGDLGK 99          
BLAST of CF417417 vs. ExPASy Swiss-Prot
Match: NDUA9_DICDI (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial OS=Dictyostelium discoideum GN=ndufa9 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.402e-11
Identity = 33/56 (58.93%), Postives = 45/56 (80.36%), Query Frame = 1
Query:  187 RSSVSGIIATVFGTTGFLGRYVVQQLAKMGSQVLVPFRGCEDDP-RHLKLMGDLGQ 351
            R+  +G++ATVFG TGF GRY+VQ LA+ G QV+VP+R CED+  R LK++G+LGQ
Sbjct:   34 RTQTTGLVATVFGATGFTGRYLVQLLARTGIQVVVPYR-CEDEGFRDLKVLGELGQ 88          
The following BLAST results are available for this feature:
BLAST of CF417417 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
NDUA9_RAT5.991e-1669.64NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA9_PANTR1.743e-1569.64NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA9_HUMAN1.743e-1569.64NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA9_GORGO1.743e-1569.64NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA9_PONPY2.973e-1569.64NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA9_PONAB2.973e-1569.64NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA9_MOUSE5.072e-1567.86NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA9_BOVIN5.072e-1571.43NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA9_NEUCR8.952e-1248.10NADH-ubiquinone oxidoreductase 40 kDa subunit, mit... [more]
NDUA9_DICDI3.402e-1158.93NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-347 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-005_A02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417417 ID=CF417417; Name=CF417417; organism=Citrus sinensis; type=EST; length=352bp
CAACGATGCAGGCCATCACAAGGCGATTAAGGCACCAATCTGTACAGCCC
GCAACTTCCATTTCTTCTCTTAAATCGGTTTACCCGCTCTCCGATTACTA
TAATGGAGCTGATCATCGGAGATTTGGATCTACTTCGGTCGCCACTCCCG
GTACCGGCCACCTTGTTCGTAAGGGCACTGGTGGGAAGATCTTCTGTTAG
TGGCATTATAGCTACAGTGTTTGGCACAACTGGGTTCCTTGGACGTTATG
TTGTGCAACAACTTGCTAAAATGGGATCTCAAGTGCTAGTTCCTTTCCGG
GGCTGTGAGGATGATCCTCGTCATCTCAAGTTGATGGGAGATTTGGGACA
GA
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