CF417418

Overview
NameCF417418
Unique NameCF417418
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length685
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF417418_ssr478 microsatellite CF417418_ssr478:478..489. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig454 contig Csv1_Contig454:1..682. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF417418 vs. ExPASy Swiss-Prot
Match: Y4744_ARATH (Uncharacterized protein At4g06744 OS=Arabidopsis thaliana GN=At4g06744 PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.333e-39
Identity = 92/229 (40.17%), Postives = 134/229 (58.52%), Query Frame = 3 
Query:   12 RIQLAFKVIQRFKKRITYDPQGIAKTWVGPDVCNKYKGFVCDVRPDIKKKA-VAGVDFNGYRFNGPDFSLSDFLEKLEDLAIFHANSNNFTKSIPKMTSKLKYLYELDVSNNKLIRRFSTGSS*YQEFNFLGPQVQLILRASPCR---DFLPGTWMFSSSTTTNSLKIFRKISAPQGALYVTFANNEFTGPIPSSIGRA-KYLLEVLFLNNFFTGCLPYEIGFLSNSTV 683
            R+ + + VIQRFK  IT DP  + KTW+G D+C+ Y+GF CD  P  K    VA +DFNG++ + P  S+  F+++  DLA+FH NSNNF  ++P     L+YLYELD+SNN+   +F T         F+  +      + P +     L   ++  +  T +  +I          L++T ANN+F GP+P SI R+   L EVLFLNN FTGC+P+EIGFL+ ++V
Sbjct:   44 RLAVVYPVIQRFKSLITLDPYNVTKTWIGSDICS-YRGFHCDNPPHNKTAVTVASIDFNGFQLSAP--SIEGFIDQFADLALFHVNSNNFGGTVPSKIVNLRYLYELDISNNRFTGQFPTAVVGMSGLTFIDIRFNSFSGSIPPQILGQNLEVLFINDNGFTASLPEI--PGDGTTHILFLTLANNKFNGPLPRSILRSMSTLTEVLFLNNDFTGCIPHEIGFLTGASV 267
The following BLAST results are available for this feature:
BLAST of CF417418 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y4744_ARATH5.333e-3940.17Uncharacterized protein At4g06744 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-348 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-005_A04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417418 ID=CF417418; Name=CF417418; organism=Citrus sinensis; type=EST; length=685bp
TTGCCAGCGATCGAATCCAACTTGCATTCAAAGTAATTCAAAGATTCAAA
AAGAGAATCACTTATGATCCACAAGGAATAGCAAAGACATGGGTGGGTCC
TGATGTTTGCAACAAATACAAGGGCTTTGTATGTGACGTACGTCCTGACA
TAAAGAAGAAAGCGGTCGCCGGAGTAGACTTCAATGGCTACCGCTTCAAC
GGACCAGACTTTAGCCTCTCAGATTTCCTGGAAAAGCTTGAAGACTTGGC
CATTTTCCATGCCAATTCCAACAACTTCACCAAATCAATCCCAAAGATGA
CATCAAAGCTGAAGTACTTATACGAGCTTGATGTGAGTAACAACAAGCTT
ATTCGGCGGTTTTCCACTGGAAGCAGTTAATATCAAGAATTTAACTTTCT
TGGACCTCAGGTTCAACTCATTCTCAGGGCCAGTCCCTGCCGAGATTTTC
TACCTGGGACCTGGATGTTCTCTTCCTCAACAACAACAAATTCTCTCAAA
ATCTTCCGGAAAATATCGGCTCCACAGGGAGCCCTTTATGTCACTTTTGC
CAACAACGAGTTCACAGGTCCCATTCCAAGCAGCATTGGCAGAGCTAAAT
ACCTGTTAGAAGTGCTTTTCCTGAACAACTTCTTTACAGGTTGCTTGCCA
TATGAGATAGGCTTTCTGAGCAACTCTACAGTTTT
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