CF417422

Overview
NameCF417422
Unique NameCF417422
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length684
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF417422_ssr185 microsatellite CF417422_ssr185:185..196. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4134 contig Csv1_Contig4134:103..778. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417422 vs. ExPASy Swiss-Prot
Match: VATE_CITUN (V-type proton ATPase subunit E OS=Citrus unshiu GN=VATE PE=2 SV=1)

HSP 1 Score: 269.626 bits (688), Expect = 1.478e-81
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 1
Query:   46 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHL 468
            MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHL
Sbjct:    1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHL 141          

HSP 2 Score: 55.0694 bits (131), Expect = 1.478e-81
Identity = 36/66 (54.55%), Postives = 38/66 (57.58%), Query Frame = 2
Query:  470 VESVLESAKEEYAQKIAGSPTRXXIVDHQIYLXXXXXXXXXXXXSCSGRXSWWLLEMGKIVCENTL 667
            VESVLESAKEEYAQK+   P    IVDH IYL            SCSG       + GKIVCENTL
Sbjct:  142 VESVLESAKEEYAQKLQVHPPE-IIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRD-GKIVCENTL 205          
BLAST of CF417422 vs. ExPASy Swiss-Prot
Match: VATE_CITLI (V-type proton ATPase subunit E OS=Citrus limon GN=VATE PE=2 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 9.495e-81
Identity = 140/141 (99.29%), Postives = 140/141 (99.29%), Query Frame = 1
Query:   46 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHL 468
            MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLK LIVQSLLRLKEPAVLLRCRKDDHHL
Sbjct:    1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKDLIVQSLLRLKEPAVLLRCRKDDHHL 141          

HSP 2 Score: 55.0694 bits (131), Expect = 9.495e-81
Identity = 36/66 (54.55%), Postives = 38/66 (57.58%), Query Frame = 2
Query:  470 VESVLESAKEEYAQKIAGSPTRXXIVDHQIYLXXXXXXXXXXXXSCSGRXSWWLLEMGKIVCENTL 667
            VESVLESAKEEYAQK+   P    IVDH IYL            SCSG       + GKIVCENTL
Sbjct:  142 VESVLESAKEEYAQKLQVHPPE-IIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRD-GKIVCENTL 205          
BLAST of CF417422 vs. ExPASy Swiss-Prot
Match: VATE_GOSHI (V-type proton ATPase subunit E OS=Gossypium hirsutum GN=VATE PE=2 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 2.265e-64
Identity = 123/141 (87.23%), Postives = 133/141 (94.33%), Query Frame = 1
Query:   46 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHL 468
            M+DADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYE+KEKQVEIRKKIEYSMQLNASRIKVLQAQDD+V+ M E+ASK+ LNVS DH+ YK+LLK LIVQSL+RLKEP VLLRCRK+D HL
Sbjct:    1 MSDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYEKKEKQVEIRKKIEYSMQLNASRIKVLQAQDDVVNAMKESASKDFLNVSHDHHVYKRLLKDLIVQSLVRLKEPGVLLRCRKEDLHL 141          

HSP 2 Score: 31.187 bits (69), Expect = 2.265e-64
Identity = 15/27 (55.56%), Postives = 18/27 (66.67%), Query Frame = 2
Query:  470 VESVLESAKEEYAQKIAGSPTRXXIVD 550
            VESVL+SAKEEYA K+   P    + D
Sbjct:  142 VESVLDSAKEEYASKVNVHPPEIIVDD 168          
BLAST of CF417422 vs. ExPASy Swiss-Prot
Match: VATE_SPIOL (V-type proton ATPase subunit E OS=Spinacia oleracea GN=VATE PE=2 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 7.138e-63
Identity = 117/141 (82.98%), Postives = 130/141 (92.20%), Query Frame = 1
Query:   46 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHL 468
            MND DV KQIQQMVRFIRQEAEEKANEISV+AEEEFNIEKLQLVEAEKKKIR EYERKEKQV++R+KIEYSMQLNASRIKVLQAQDDLV++M E A+KE+L VS DH+ YK+LLK L+VQSLLRL+EP VLLRCR+DD HL
Sbjct:    1 MNDTDVQKQIQQMVRFIRQEAEEKANEISVAAEEEFNIEKLQLVEAEKKKIRPEYERKEKQVQVRRKIEYSMQLNASRIKVLQAQDDLVNSMKEEAAKELLRVSGDHHHYKRLLKELVVQSLLRLREPGVLLRCREDDVHL 141          

HSP 2 Score: 33.4982 bits (75), Expect = 7.138e-63
Identity = 30/66 (45.45%), Postives = 33/66 (50.00%), Query Frame = 2
Query:  470 VESVLESAKEEYAQKIAGSPTRXXIVDHQIYLXXXXXXXXXXXXSCSGRXSWWLLEMGKIVCENTL 667
            VE VL SAKEEYA+K A   T   IVD  I+L             CSG       + GKIV ENTL
Sbjct:  142 VEHVLNSAKEEYAEK-AEVHTPEIIVD-SIHLPAGPSHHKEHGLHCSGGVVLASRD-GKIVFENTL 204          
BLAST of CF417422 vs. ExPASy Swiss-Prot
Match: VATE1_ARATH (V-type proton ATPase subunit E1 OS=Arabidopsis thaliana GN=VHA-E1 PE=1 SV=2)

HSP 1 Score: 221.09 bits (562), Expect = 1.322e-61
Identity = 112/138 (81.16%), Postives = 129/138 (93.48%), Query Frame = 1
Query:   46 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDD 459
            MND DVS+QIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQ+YE+KEKQ ++RKKI+YSMQLNASRIKVLQAQDD+V+ M + A+K++LNVSRD  +YK+LLK LIVQ LLRLKEP+VLLRCR++D
Sbjct:    1 MNDGDVSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQDYEKKEKQADVRKKIDYSMQLNASRIKVLQAQDDIVNAMKDQAAKDLLNVSRDEYAYKQLLKDLIVQCLLRLKEPSVLLRCREED 138          

HSP 2 Score: 36.965 bits (84), Expect = 1.322e-61
Identity = 28/66 (42.42%), Postives = 33/66 (50.00%), Query Frame = 2
Query:  470 VESVLESAKEEYAQKIAGSPTRXXIVDHQIYLXXXXXXXXXXXXSCSGRXSWWLLEMGKIVCENTL 667
            VE+VL+ AKEEYA K A        VD +I+L             CSG       + GKIVCENTL
Sbjct:  142 VEAVLDDAKEEYAGK-AKVHAPEVAVDTKIFLPPPPKSNDPHGLHCSGGVVLASRD-GKIVCENTL 205          
BLAST of CF417422 vs. ExPASy Swiss-Prot
Match: VATE3_ARATH (V-type proton ATPase subunit E3 OS=Arabidopsis thaliana GN=VHA-E3 PE=2 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 3.474e-59
Identity = 112/144 (77.78%), Postives = 127/144 (88.19%), Query Frame = 1
Query:   46 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSR------DHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDD 459
            MNDAD S QIQQMVRFIRQEAEEKANEIS+S+EEEFNIEKLQLVEAEKKKIRQEYE+KEKQV++RKKI+YSMQLNASRIKVLQAQDD+V+ M E A+K++L VS+       H+ YK LLK LIVQ LLRLKEPAVLLRCR++D
Sbjct:    1 MNDADASIQIQQMVRFIRQEAEEKANEISISSEEEFNIEKLQLVEAEKKKIRQEYEKKEKQVDVRKKIDYSMQLNASRIKVLQAQDDIVNAMKEEAAKQLLKVSQHGFFNHHHHQYKHLLKDLIVQCLLRLKEPAVLLRCREED 144          

HSP 2 Score: 37.3502 bits (85), Expect = 3.474e-59
Identity = 27/66 (40.91%), Postives = 33/66 (50.00%), Query Frame = 2
Query:  470 VESVLESAKEEYAQKIAGSPTRXXIVDHQIYLXXXXXXXXXXXXSCSGRXSWWLLEMGKIVCENTL 667
            VES+L+ A EEY +K A       IVD  I+L            SC+G       + GKIVCENTL
Sbjct:  148 VESMLDDASEEYCKK-AKVHAPEIIVDKDIFLPPAPSDDDPHALSCAGGVVLASRD-GKIVCENTL 211          
BLAST of CF417422 vs. ExPASy Swiss-Prot
Match: VATE_MESCR (V-type proton ATPase subunit E OS=Mesembryanthemum crystallinum GN=VATE PE=2 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 7.983e-59
Identity = 118/140 (84.29%), Postives = 128/140 (91.43%), Query Frame = 1
Query:   46 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHH 465
            MND DV  QIQQMVRF+RQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERK KQV++R+KIEYSMQLNASRIKVLQAQDDLV+ M EAASKE+L VS DH+ Y+ LLK LIVQSLLRLKEPAVLLRCR++D H
Sbjct:    1 MNDTDVQNQIQQMVRFMRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKAKQVDVRRKIEYSMQLNASRIKVLQAQDDLVNAMKEAASKELLLVSGDHHQYRNLLKELIVQSLLRLKEPAVLLRCREEDKH 140          
BLAST of CF417422 vs. ExPASy Swiss-Prot
Match: VATE2_ARATH (V-type proton ATPase subunit E2 OS=Arabidopsis thaliana GN=VHA-E2 PE=2 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 2.422e-57
Identity = 104/138 (75.36%), Postives = 127/138 (92.03%), Query Frame = 1
Query:   46 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDD 459
            MNDADVSKQIQQMVRFIRQEAEEKANEIS+SAEEEFNIE+LQL+E+ K+K+RQ+Y+RK KQV+IRK+I+YS QLNASRIK LQAQDD+V+ M ++A+K++L VS D N+YKKLLK LI++SLLRLKEP+VLLRCR+ D
Sbjct:    1 MNDADVSKQIQQMVRFIRQEAEEKANEISISAEEEFNIERLQLLESAKRKLRQDYDRKLKQVDIRKRIDYSTQLNASRIKYLQAQDDVVTAMKDSAAKDLLRVSNDKNNYKKLLKSLIIESLLRLKEPSVLLRCREMD 138          

HSP 2 Score: 35.4242 bits (80), Expect = 2.422e-57
Identity = 27/69 (39.13%), Postives = 35/69 (50.72%), Query Frame = 2
Query:  470 VESVLESAKEEYAQKI-AGSPTRXXIVDHQIYLXXXXXXXXXXXXS--CSGRXSWWLLEMGKIVCENTL 667
            VESV+E AK +YA+K   GSP     +D +++L               CSG       + GKIVCENTL
Sbjct:  142 VESVIEDAKRQYAEKAKVGSP--KITIDEKVFLPPPPNPKLPDSHDPHCSGGVV-LASQDGKIVCENTL 207          
BLAST of CF417422 vs. ExPASy Swiss-Prot
Match: VATE1_RAT (V-type proton ATPase subunit E 1 OS=Rattus norvegicus GN=Atp6v1e1 PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.161e-33
Identity = 70/141 (49.65%), Postives = 103/141 (73.05%), Query Frame = 1
Query:   46 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHL 468
            ++DADV KQI+ M+ FI QEA EKA EI   AEEEFNIEK +LV+ ++ KI + YE+KEKQ+E +KKI+ S  +N +R+KVL+A+DDL+++++  A + +  V +D   Y+ LL GL++Q L +L EP +++RCRK D  L
Sbjct:    3 LSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKKEKQIEQQKKIQMSNLMNQARLKVLRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLVLQGLYQLLEPRMIVRCRKQDFPL 143          
BLAST of CF417422 vs. ExPASy Swiss-Prot
Match: VATE1_MOUSE (V-type proton ATPase subunit E 1 OS=Mus musculus GN=Atp6v1e1 PE=1 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 1.161e-33
Identity = 70/141 (49.65%), Postives = 103/141 (73.05%), Query Frame = 1
Query:   46 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHL 468
            ++DADV KQI+ M+ FI QEA EKA EI   AEEEFNIEK +LV+ ++ KI + YE+KEKQ+E +KKI+ S  +N +R+KVL+A+DDL+++++  A + +  V +D   Y+ LL GL++Q L +L EP +++RCRK D  L
Sbjct:    3 LSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKKEKQIEQQKKIQMSNLMNQARLKVLRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLVLQGLYQLLEPRMIVRCRKQDFPL 143          
The following BLAST results are available for this feature:
BLAST of CF417422 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
VATE_CITUN1.478e-81100.00V-type proton ATPase subunit E OS=Citrus unshiu GN... [more]
VATE_CITLI9.495e-8199.29V-type proton ATPase subunit E OS=Citrus limon GN=... [more]
VATE_GOSHI2.265e-6487.23V-type proton ATPase subunit E OS=Gossypium hirsut... [more]
VATE_SPIOL7.138e-6382.98V-type proton ATPase subunit E OS=Spinacia olerace... [more]
VATE1_ARATH1.322e-6181.16V-type proton ATPase subunit E1 OS=Arabidopsis tha... [more]
VATE3_ARATH3.474e-5977.78V-type proton ATPase subunit E3 OS=Arabidopsis tha... [more]
VATE_MESCR7.983e-5984.29V-type proton ATPase subunit E OS=Mesembryanthemum... [more]
VATE2_ARATH2.422e-5775.36V-type proton ATPase subunit E2 OS=Arabidopsis tha... [more]
VATE1_RAT1.161e-3349.65V-type proton ATPase subunit E 1 OS=Rattus norvegi... [more]
VATE1_MOUSE1.161e-3349.65V-type proton ATPase subunit E 1 OS=Mus musculus G... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-352 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-005_A08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417422 ID=CF417422; Name=CF417422; organism=Citrus sinensis; type=EST; length=684bp
CATTTTGATATCAACAATCTAATCAAATCAAAAGATCCCGCGAAAATGAA
CGACGCTGATGTTTCGAAGCAGATCCAGCAGATGGTGCGGTTTATCCGCC
AAGAAGCCGAAGAGAAAGCCAACGAGATCTCAGTTTCTGCCGAAGAAGAA
TTCAACATAGAGAAGTTGCAGCTGGTGGAAGCAGAGAAGAAGAAGATCAG
ACAAGAGTACGAGCGGAAAGAGAAGCAAGTCGAAATCAGAAAGAAGATTG
AGTACTCCATGCAGCTGAATGCTTCTCGGATCAAAGTTCTTCAAGCTCAG
GATGATTTGGTCAGTAATATGATGGAGGCAGCATCAAAGGAGGTTTTGAA
TGTGAGTCGAGATCACAATTCATATAAGAAGCTTTTGAAGGGTCTTATTG
TTCAGAGTTTGCTCAGGCTGAAAGAGCCAGCTGTGTTACTGAGATGCCGC
AAAGATGACCATCATTTGGGTGGAGTCTGTTTTGGAGTCAGCAAAAGAGG
AATATGCACAGAAAATTGCAGGTTCACCCACCAGAGNATNAATTGTGGAT
CATCAAATCTATCTTCCGCCTGGCCCTGGCCATCATAATGCCCATGGTCC
ATCCTGCTCAGGGAGGGNGTCGTGGTGGCTTCTCGAGATGGGNAAGATAG
TATGTGAGAATACCCTTGGATGCCCGGGTGGGAT
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