CF417423

Overview
NameCF417423
Unique NameCF417423
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length433
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1721 contig Csv1_Contig1721:238..668. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417423 vs. ExPASy Swiss-Prot
Match: FER_BRANA (Ferredoxin OS=Brassica napus PE=1 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 5.003e-37
Identity = 69/84 (82.14%), Postives = 78/84 (92.86%), Query Frame = 3
Query:   48 GEEEINCPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 299
            GE+E+ C DD ++LDAAEEAG+DLPYSCRAG+CSSC GKVVSG VDQS++SFLDDDQ+ EGFVLTCAAYPTSDVTIETHKEEEL
Sbjct:   12 GEQEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGFVDQSDESFLDDDQIAEGFVLTCAAYPTSDVTIETHKEEEL 95          
BLAST of CF417423 vs. ExPASy Swiss-Prot
Match: FER3_RAPSA (Ferredoxin, leaf L-A OS=Raphanus sativus PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 8.533e-37
Identity = 67/84 (79.76%), Postives = 79/84 (94.05%), Query Frame = 3
Query:   48 GEEEINCPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 299
            GE+E+ C DD ++LDAAEEAG+DLPYSCRAG+CSSC GKVVSG+VDQS+QSFLDDDQ+ EGFVLTCAAYPTSDVTIETH+EE++
Sbjct:   12 GEQEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDDQIAEGFVLTCAAYPTSDVTIETHREEDM 95          
BLAST of CF417423 vs. ExPASy Swiss-Prot
Match: FER2_ARATH (Ferredoxin-2, chloroplastic OS=Arabidopsis thaliana GN=FD2 PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 8.533e-37
Identity = 68/84 (80.95%), Postives = 79/84 (94.05%), Query Frame = 3
Query:   48 GEEEINCPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 299
            GE E+ C DD ++LDAAEEAG+DLPYSCRAG+CSSC GKVVSG+VDQS+QSFLDD+Q+GEGFVLTCAAYPTSDVTIETHKEE++
Sbjct:   64 GELEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDEQIGEGFVLTCAAYPTSDVTIETHKEEDI 147          
BLAST of CF417423 vs. ExPASy Swiss-Prot
Match: FER1_APHFL (Ferredoxin-1 OS=Aphanizomenon flos-aquae PE=1 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 2.102e-35
Identity = 67/85 (78.82%), Postives = 77/85 (90.59%), Query Frame = 3
Query:   45 GGEEEINCPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 299
            G    I+CPDDT+ILDAAEEAGLDLPYSCRAGACS+C GK+V+GT+DQS+QSFLDDDQ+  G+VLTC AYPTSDVTIETHKEE+L
Sbjct:   13 GTTTTIDCPDDTYILDAAEEAGLDLPYSCRAGACSTCAGKLVTGTIDQSDQSFLDDDQVEAGYVLTCVAYPTSDVTIETHKEEDL 97          
BLAST of CF417423 vs. ExPASy Swiss-Prot
Match: FER_SCEQU (Ferredoxin OS=Scenedesmus quadricauda PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 3.585e-35
Identity = 68/84 (80.95%), Postives = 74/84 (88.10%), Query Frame = 3
Query:   48 GEEEINCPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 299
            G++ I CPDDT+ILDAAEEAGLDLPYSCRAGACSSC GKV +GTVDQS+QSFLDD QM  GFVLTC AYPTSD TI THKEE+L
Sbjct:   12 GDQTIECPDDTYILDAAEEAGLDLPYSCRAGACSSCAGKVEAGTVDQSDQSFLDDSQMDGGFVLTCVAYPTSDCTIATHKEEDL 95          
BLAST of CF417423 vs. ExPASy Swiss-Prot
Match: FER1_ARATH (Ferredoxin-1, chloroplastic OS=Arabidopsis thaliana GN=FD1 PE=1 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 4.682e-35
Identity = 64/84 (76.19%), Postives = 76/84 (90.48%), Query Frame = 3
Query:   48 GEEEINCPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 299
            GE+E+ C +D ++LDAAEEAGLDLPYSCRAG+CSSC GKVVSG++DQS+QSFLDD+QM EG+VLTC AYPTSDV IETHKEE +
Sbjct:   64 GEQEVECEEDVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQMSEGYVLTCVAYPTSDVVIETHKEEAI 147          
BLAST of CF417423 vs. ExPASy Swiss-Prot
Match: FER_CHLFU (Ferredoxin OS=Chlorella fusca PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 7.987e-35
Identity = 69/84 (82.14%), Postives = 74/84 (88.10%), Query Frame = 3
Query:   48 GEEEINCPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 299
            GEE I CP+DT+ILDAAEEAGLDLPYSCRAGACSSC GKV SG VDQS+QSFLDD QMG+GFVLTC AYPTSDVTI TH+E  L
Sbjct:   10 GEETIECPEDTYILDAAEEAGLDLPYSCRAGACSSCAGKVESGEVDQSDQSFLDDAQMGKGFVLTCVAYPTSDVTILTHQEAAL 93          
BLAST of CF417423 vs. ExPASy Swiss-Prot
Match: FER1_PHYES (Ferredoxin-1 OS=Phytolacca esculenta PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 7.987e-35
Identity = 65/85 (76.47%), Postives = 75/85 (88.24%), Query Frame = 3
Query:   48 GEEEINCPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEELA 302
            G + I+CPDDT++LDAAEEAGLDLPYSCRAG+CSSC GKV +GTVDQ +QSFLDDDQ+  GFVLTC AYP  DVTIETHKEE++A
Sbjct:   12 GTQTIDCPDDTYVLDAAEEAGLDLPYSCRAGSCSSCAGKVTAGTVDQEDQSFLDDDQIEAGFVLTCVAYPKGDVTIETHKEEDIA 96          
BLAST of CF417423 vs. ExPASy Swiss-Prot
Match: FER_CHLRE (Ferredoxin, chloroplastic OS=Chlamydomonas reinhardtii GN=PETF PE=1 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 1.043e-34
Identity = 67/84 (79.76%), Postives = 74/84 (88.10%), Query Frame = 3
Query:   48 GEEEINCPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 299
            G++ I CP DT+ILDAAEEAGLDLPYSCRAGACSSC GKV +GTVDQS+QSFLDD QMG GFVLTC AYPTSD TI+TH+EE L
Sbjct:   42 GDKTIECPADTYILDAAEEAGLDLPYSCRAGACSSCAGKVAAGTVDQSDQSFLDDAQMGNGFVLTCVAYPTSDCTIQTHQEEAL 125          
BLAST of CF417423 vs. ExPASy Swiss-Prot
Match: FER1_PHYAM (Ferredoxin-1 OS=Phytolacca americana PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.779e-34
Identity = 64/84 (76.19%), Postives = 75/84 (89.29%), Query Frame = 3
Query:   48 GEEEINCPDDTFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 299
            G + I+CPDDT++LDAAEEAGLDLPYSCRAG+CSSCTGKV +GTVDQ +QSFLDDDQ+  GFVLTC A+P  DVTIETHKEE++
Sbjct:   12 GTQTIDCPDDTYVLDAAEEAGLDLPYSCRAGSCSSCTGKVTAGTVDQEDQSFLDDDQIEAGFVLTCVAFPKGDVTIETHKEEDI 95          
The following BLAST results are available for this feature:
BLAST of CF417423 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
FER_BRANA5.003e-3782.14Ferredoxin OS=Brassica napus PE=1 SV=1[more]
FER3_RAPSA8.533e-3779.76Ferredoxin, leaf L-A OS=Raphanus sativus PE=1 SV=1[more]
FER2_ARATH8.533e-3780.95Ferredoxin-2, chloroplastic OS=Arabidopsis thalian... [more]
FER1_APHFL2.102e-3578.82Ferredoxin-1 OS=Aphanizomenon flos-aquae PE=1 SV=2[more]
FER_SCEQU3.585e-3580.95Ferredoxin OS=Scenedesmus quadricauda PE=1 SV=1[more]
FER1_ARATH4.682e-3576.19Ferredoxin-1, chloroplastic OS=Arabidopsis thalian... [more]
FER_CHLFU7.987e-3582.14Ferredoxin OS=Chlorella fusca PE=1 SV=1[more]
FER1_PHYES7.987e-3576.47Ferredoxin-1 OS=Phytolacca esculenta PE=1 SV=1[more]
FER_CHLRE1.043e-3479.76Ferredoxin, chloroplastic OS=Chlamydomonas reinhar... [more]
FER1_PHYAM1.779e-3476.19Ferredoxin-1 OS=Phytolacca americana PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-353 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-005_A09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417423 ID=CF417423; Name=CF417423; organism=Citrus sinensis; type=EST; length=433bp
GTTGTAGCCATGGCTACATACAAAGTCAAGACTCATTACACACTGGGGGA
GAGGAAGAAATCAACTGTCCTGATGACACGTTTATTCTTGATGCTGCTGA
AGAAGCTGGGCTTGATCTTCCGTACTCATGCAGGGCTGGGGCTTGCTCTT
CCTGTACTGGGAAAGTTGTGTCTGGAACCGTTGACCAGTCGGAGCAAAGC
TTTCTGGATGATGATCAAATGGGAGAAGGTTTTGTTCTCACTTGTGCTGC
TTATCCAACAAGTGATGTTACTATAGAGACTCACAAGGAAGAGGAGCTCG
CTGGNTAATAATGTGCTCTTGATATCTCATTATTATCTTCTCTTTTATGN
GTTGTGTTTTGTCTGATTATTTTAATGCTTTGAAAGGGATATTGAGTAAT
TTGAGAATGATTCTTGTAATGTGTTTTTAGAAA
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