CF417432

Overview
NameCF417432
Unique NameCF417432
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length585
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6127 contig Csv1_Contig6127:122..720. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417432 vs. ExPASy Swiss-Prot
Match: CP058_HUMAN (UPF0420 protein C16orf58 OS=Homo sapiens GN=C16orf58 PE=1 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 1.761e-31
Identity = 66/144 (45.83%), Postives = 91/144 (63.19%), Query Frame = 2
Query:  152 SVTPDYVPFQVWDSLQGLSTYIRTMLSTQALLSAIGVGEKSATVIGATFQWFLRDLTGMLGGVLFTFYQGSNLDSNAKMWRLVAXXXXXXXXXXXXXSPLFPSAFAFVVCLGSLSRSFTGVASGATRAALTQHFALQNNAADIS 583
            SV+PDY+P+Q+WDS+Q  ++ +   L+TQA+L  IGVG   ATV  AT  W ++D TGMLG ++F +++GS LD NAK WRL A             +P++P  F   V   +L++    VA GATRAALT H A +NN AD+S
Sbjct:   85 SVSPDYLPYQLWDSVQAFASSLSGSLATQAVLLGIGVGNAKATVSAATATWLVKDSTGMLGRIVFAWWKGSKLDCNAKQWRLFADILNDVAMFLEIMAPVYPICFTMTVSTSNLAKCIVSVAGGATRAALTVHQARRNNMADVS 228          
BLAST of CF417432 vs. ExPASy Swiss-Prot
Match: CP058_PONAB (UPF0420 protein C16orf58 homolog OS=Pongo abelii PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.300e-31
Identity = 66/144 (45.83%), Postives = 91/144 (63.19%), Query Frame = 2
Query:  152 SVTPDYVPFQVWDSLQGLSTYIRTMLSTQALLSAIGVGEKSATVIGATFQWFLRDLTGMLGGVLFTFYQGSNLDSNAKMWRLVAXXXXXXXXXXXXXSPLFPSAFAFVVCLGSLSRSFTGVASGATRAALTQHFALQNNAADIS 583
            SV+PDY+P+Q+WDS+Q  ++ +   L+TQA+L  IGVG   ATV  AT  W ++D TGMLG ++F +++GS LD NAK WRL A             +P++P  F   V   +L++    VA GATRAALT H A +NN AD+S
Sbjct:   85 SVSPDYLPYQLWDSVQAFASGLSGSLATQAVLLGIGVGNAKATVSAATATWLVKDSTGMLGRIVFAWWKGSKLDCNAKQWRLFADILNDVAMFLEIMAPVYPICFTMTVSTSNLAKCIVSVAGGATRAALTVHQARRNNMADVS 228          
BLAST of CF417432 vs. ExPASy Swiss-Prot
Match: CP058_MOUSE (UPF0420 protein C16orf58 homolog OS=Mus musculus PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.005e-31
Identity = 64/144 (44.44%), Postives = 91/144 (63.19%), Query Frame = 2
Query:  152 SVTPDYVPFQVWDSLQGLSTYIRTMLSTQALLSAIGVGEKSATVIGATFQWFLRDLTGMLGGVLFTFYQGSNLDSNAKMWRLVAXXXXXXXXXXXXXSPLFPSAFAFVVCLGSLSRSFTGVASGATRAALTQHFALQNNAADIS 583
            SV+PDY+P+Q+WDS+Q  ++ +   L+TQA+L  +GVG   A+V  AT  W ++D TGMLG ++  +++GS LD NAK WRL A             +P++P  F   V   +L++   GVA GATRAALT H A +NN AD+S
Sbjct:   83 SVSPDYLPYQLWDSVQAFASSLSGSLATQAVLQGLGVGNAKASVSAATSTWLVKDSTGMLGRIILAWWKGSKLDCNAKQWRLFADILNDVAMFLEIMAPMYPIFFTMTVSTSNLAKCIVGVAGGATRAALTMHQARRNNMADVS 226          
BLAST of CF417432 vs. ExPASy Swiss-Prot
Match: CP058_RAT (UPF0420 protein C16orf58 homolog OS=Rattus norvegicus PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.125e-31
Identity = 64/144 (44.44%), Postives = 91/144 (63.19%), Query Frame = 2
Query:  152 SVTPDYVPFQVWDSLQGLSTYIRTMLSTQALLSAIGVGEKSATVIGATFQWFLRDLTGMLGGVLFTFYQGSNLDSNAKMWRLVAXXXXXXXXXXXXXSPLFPSAFAFVVCLGSLSRSFTGVASGATRAALTQHFALQNNAADIS 583
            SV+PDY+ +Q+WDS+Q  ++ +   L+TQA+L  +GVG   A+V  AT  W ++D TGMLG ++F +++GS LD NAK WRL A             +P++P  F   V   +L++   GVA GATRAALT H A +NN AD+S
Sbjct:   83 SVSPDYLQYQLWDSVQAFASSLSGSLATQAVLQGLGVGNAKASVSAATSTWLVKDSTGMLGRIIFAWWKGSKLDCNAKQWRLFADILNDTAMFLEIMAPMYPIFFTMTVSTSNLAKCIVGVAGGATRAALTMHQARRNNMADVS 226          
BLAST of CF417432 vs. ExPASy Swiss-Prot
Match: U420_DICDI (UPF0420 protein OS=Dictyostelium discoideum GN=DDB_G0277179 PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 9.665e-30
Identity = 66/145 (45.52%), Postives = 92/145 (63.45%), Query Frame = 2
Query:  152 SVTPDYVPFQVWDSLQGLSTYIRTMLSTQALLSAIGVGEKSATVIGATFQWFLRDLTGMLGGVLFTFYQGSNLDSNAKMWRLVAXXXXXXXXXXXXXSPLFPS-AFAFVVCLGSLSRSFTGVASGATRAALTQHFALQNNAADIS 583
            SVT DY  +Q WDS+Q L + I   L+T+A+L   GVG+ SATV  AT QW +RD  GM+G ++F + +G++LD N+K WR  A             SPLF S  F  + C+G +++S  GVA G T+A+LTQHFA ++N AD+S
Sbjct:   71 SVTTDYFGYQFWDSIQALCSTITGTLATRAILKGYGVGDSSATVASATTQWLIRDGMGMIGRIVFAWRKGTDLDCNSKKWRYTADILNNIGMAFEMISPLFSSQLFLPLSCIGLIAKSICGVAGGCTKASLTQHFAKRDNLADVS 215          
The following BLAST results are available for this feature:
BLAST of CF417432 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
CP058_HUMAN1.761e-3145.83UPF0420 protein C16orf58 OS=Homo sapiens GN=C16orf... [more]
CP058_PONAB2.300e-3145.83UPF0420 protein C16orf58 homolog OS=Pongo abelii P... [more]
CP058_MOUSE3.005e-3144.44UPF0420 protein C16orf58 homolog OS=Mus musculus P... [more]
CP058_RAT5.125e-3144.44UPF0420 protein C16orf58 homolog OS=Rattus norvegi... [more]
U420_DICDI9.665e-3045.52UPF0420 protein OS=Dictyostelium discoideum GN=DDB... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-362 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-005_B08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417432 ID=CF417432; Name=CF417432; organism=Citrus sinensis; type=EST; length=585bp
CAACAGCTGATAATCGAAGAATGGAATGGATCATCTTCAACCAAGCTCTT
CAAAACCGCTACAATTTTCGCATCTCCGTCTCTCTCCATTCACAGATCCG
GTAGTCGTTTTACGCATGTCTGGAGCCGAGTTCTCCAAGCTTTTGTACCT
GAGTGTGACTCCAGATTATGTCCCATTTCAAGTATGGGATTCTTTGCAGG
GCCTTTCGACATACATTAGGACCATGCTTTCTACTCAAGCTCTTTTGAGT
GCCATTGGCGTTGGTGAGAAATCAGCTACTGTTATCGGTGCAACATTTCA
GTGGTTTTTGAGGGATCTTACTGGAATGCTTGGAGGTGTCTTGTTCACAT
TTTATCAGGGCTCAAATCTGGATAGCAATGCTAAAATGTGGCGTCTGGTC
GCAGATCTTATGAATGATCTTGGGATGTTGATGGACCTTCTTTCCCCTTT
GTTTCCTTCAGCTTTTGCATTTGTTGTTTGCTTAGGGAGCTTATCAAGAT
CATTCACTGGTGTTGCAAGTGGAGCTACTAGAGCTGCTTTGACACAGCAT
TTTGCCCTCCAGAATAATGCTGCTGATATATCTGC
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