CF417436

Overview
NameCF417436
Unique NameCF417436
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length636
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7159 contig Csv1_Contig7159:36..671. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417436 vs. ExPASy Swiss-Prot
Match: ERF23_ARATH (Ethylene-responsive transcription factor ERF023 OS=Arabidopsis thaliana GN=ERF023 PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.446e-40
Identity = 90/142 (63.38%), Postives = 103/142 (72.54%), Query Frame = 3
Query:   48 TATAXAIH------RKSXSQTGGTRHPVYXGXXXXRWGKWVSEITXPRXKTRIWLGSFPXPEMAARAYDXAAYCLKGRKAQLNFPDKVEALPRPSTRAARDIQEAAAKAAHA-GLISSEKSDVSE-SDGDDFWGEIELPELM 449
            TATA A+       +++ S T  TRHPVY G    RWGKWVSEI  PR K+RIWLGSFP PEMAA+AYD AA+CLKGRKAQLNFP+++E LPRPST   RDIQ AAAKAA+A  +I     DV+   DGDDFW  IELPELM
Sbjct:   19 TATASAVKSCGGGGKETSSST--TRHPVYHGVRKRRWGKWVSEIREPRKKSRIWLGSFPVPEMAAKAYDVAAFCLKGRKAQLNFPEEIEDLPRPSTCTPRDIQVAAAKAANAVKIIKMGDDDVAGIDDGDDFWEGIELPELM 158          
BLAST of CF417436 vs. ExPASy Swiss-Prot
Match: DREB3_ARATH (Dehydration-responsive element-binding protein 3 OS=Arabidopsis thaliana GN=DREB3 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.896e-26
Identity = 60/121 (49.59%), Postives = 74/121 (61.16%), Query Frame = 3
Query:   42 SATATAXAIHRKSXSQTGGTRHPVYXGXXXXRWGKWVSEITXPRXKTRIWLGSFPXPEMAARAYDXAAYCLKGRKAQLNFPDKVEALPRPSTRAARDIQEAAAKAAHAGLISSEKSDVSES 404
            S  + A    +K+       +HPVY G     WGKWVSEI  PR K+RIWLG+FP PEMAARA+D AA  +KG  A LNFP+  ++ PRP + + RDIQ AA KAAH    +S  S  S S
Sbjct:   27 SDKSKAEQSEKKTKRGRDSGKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGTAAILNFPELADSFPRPVSLSPRDIQTAALKAAHMEPTTSFSSSTSSS 147          
BLAST of CF417436 vs. ExPASy Swiss-Prot
Match: TINY_ARATH (Ethylene-responsive transcription factor TINY OS=Arabidopsis thaliana GN=TINY PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 7.701e-26
Identity = 58/99 (58.59%), Postives = 66/99 (66.67%), Query Frame = 3
Query:  102 RHPVYXGXXXXRWGKWVSEITXPRXKTRIWLGSFPXPEMAARAYDXAAYCLKGRKAQLNFPDKVEALPRPSTRAARDIQEAAAKAAHAGLISSEKSDVS 398
            +HPVY G     WGKWVSEI  PR K+RIWLG+FP PEMAARA+D AA  +KG  A LNFPD   + PRPS+ + RDIQ AA KAAH     S  S  S
Sbjct:   32 KHPVYRGVRKRNWGKWVSEIREPRKKSRIWLGTFPSPEMAARAHDVAALSIKGASAILNFPDLAGSFPRPSSLSPRDIQVAALKAAHMETSQSFSSSSS 130          
BLAST of CF417436 vs. ExPASy Swiss-Prot
Match: ERF34_ARATH (Ethylene-responsive transcription factor ERF034 OS=Arabidopsis thaliana GN=ERF034 PE=2 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 2.739e-23
Identity = 52/95 (54.74%), Postives = 61/95 (64.21%), Query Frame = 3
Query:   75 KSXSQTGGTRHPVYXGXXXXRWGKWVSEITXPRXKTRIWLGSFPXPEMAARAYDXAAYCLKGRKAQLNFPDKVEALPRPSTRAARDIQEAAAKAA 359
            K     GG +HP Y G     WGKWVSEI  PR K+RIWLG++P  EMAARA+D AA  +KG  A LNFP     LPRP T + +DIQ AA+ AA
Sbjct:   87 KRRKTNGGDKHPTYRGVRMRSWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGTTAYLNFPKLAGELPRPVTNSPKDIQAAASLAA 181          
BLAST of CF417436 vs. ExPASy Swiss-Prot
Match: ERF39_ARATH (Ethylene-responsive transcription factor ERF039 OS=Arabidopsis thaliana GN=ERF039 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.041e-22
Identity = 60/124 (48.39%), Postives = 78/124 (62.90%), Query Frame = 3
Query:   87 QTGGTRHPVYXGXXXXRWGKWVSEITXPRXKTRIWLGSFPXPEMAARAYDXAAYCLKGRKAQLNFPDKVEALPRPSTRAARDIQEAAAKAAHAGLISSE--KSDVSESD-GDDFWGEIELPELM 449
            Q G ++ P + G    +WGKWVSEI  PR K+RIWLG+F  PEMAARA+D AA  +KG  A LNFP+    LPRP++   +DIQEAAA AA     + E   S V+ S   DD +   +LP+L+
Sbjct:   31 QKGVSKQPNFRGVRMRQWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALAIKGGSAHLNFPELAYHLPRPASADPKDIQEAAAAAAAVDWKAPESPSSTVTSSPVADDAFS--DLPDLL 152          
BLAST of CF417436 vs. ExPASy Swiss-Prot
Match: ERF36_ARATH (Ethylene-responsive transcription factor ERF036 OS=Arabidopsis thaliana GN=ERF036 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.359e-22
Identity = 51/94 (54.26%), Postives = 62/94 (65.96%), Query Frame = 3
Query:   78 SXSQTGGTRHPVYXGXXXXRWGKWVSEITXPRXKTRIWLGSFPXPEMAARAYDXAAYCLKGRKAQLNFPDKVEALPRPSTRAARDIQEAAAKAA 359
            S S +   +HPVY G     WGKWVSEI  PR KTRIWLG+F   +MAARA+D AA  +KG  A LNFP+     PRP++ +  DIQ AAA+AA
Sbjct:   67 SASSSSSMQHPVYRGVRMRSWGKWVSEIRQPRKKTRIWLGTFVTADMAARAHDVAALTIKGSSAVLNFPELASLFPRPASSSPHDIQTAAAEAA 160          
BLAST of CF417436 vs. ExPASy Swiss-Prot
Match: ERF37_ARATH (Ethylene-responsive transcription factor ERF037 OS=Arabidopsis thaliana GN=ERF037 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.564e-21
Identity = 51/94 (54.26%), Postives = 60/94 (63.83%), Query Frame = 3
Query:  108 PVYXGXXXXRWGKWVSEITXPRXKTRIWLGSFPXPEMAARAYDXAAYCLKGRKAQLNFPDKVEALPRPSTRAARDIQEAAAKAAHAGLISSEKS 389
            P Y G     WGKWVSEI  PR K+RIWLG+F  PEMAARA+D AA  +KG  A LNFP+    LPRP++ + RD+Q AAA AA      S  S
Sbjct:   41 PGYRGVRMRTWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDAAALTIKGTSAVLNFPELATYLPRPASSSPRDVQAAAAVAAAMDFSPSSSS 134          
BLAST of CF417436 vs. ExPASy Swiss-Prot
Match: ERF38_ARATH (Ethylene-responsive transcription factor ERF038 OS=Arabidopsis thaliana GN=ERF038 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.348e-21
Identity = 51/102 (50.00%), Postives = 65/102 (63.73%), Query Frame = 3
Query:   99 TRHPVYXGXXXXRWGKWVSEITXPRXKTRIWLGSFPXPEMAARAYDXAAYCLKGRKAQLNFPDKVEALPRPSTRAARDIQEAAAKAAHAGLISSEKSDVSES 404
            ++HP + G    +WGKWVSEI  P+ K+RIWLG+F   EMAARA+D AA  +KG  A LNFP+    LPRP++   +DIQ AAA AA A  I  +    S S
Sbjct:   40 SKHPNFRGVRMRQWGKWVSEIREPKKKSRIWLGTFSTAEMAARAHDVAALAIKGGSAHLNFPELAYHLPRPASADPKDIQAAAAAAAAAVAIDMDVETSSPS 141          
BLAST of CF417436 vs. ExPASy Swiss-Prot
Match: ERF43_ARATH (Ethylene-responsive transcription factor ERF043 OS=Arabidopsis thaliana GN=ERF043 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.373e-21
Identity = 48/86 (55.81%), Postives = 59/86 (68.60%), Query Frame = 3
Query:  102 RHPVYXGXXXXRWGKWVSEITXPRXKTRIWLGSFPXPEMAARAYDXAAYCLKGRKAQLNFPDKVEALPRPSTRAARDIQEAAAKAA 359
            + PVY G     WGKWVSEI  PR K+RIWLG+FP  EMA RA+D AA  +KG  A LNFP+  + LPRP + + RD++ AA KAA
Sbjct:   15 KQPVYRGVRMRSWGKWVSEIREPRKKSRIWLGTFPTAEMAMRAHDVAAMSIKGTSAILNFPELSKLLPRPVSLSPRDVRAAATKAA 100          
BLAST of CF417436 vs. ExPASy Swiss-Prot
Match: ERF42_ARATH (Ethylene-responsive transcription factor ERF042 OS=Arabidopsis thaliana GN=ERF042 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.711e-21
Identity = 49/83 (59.04%), Postives = 59/83 (71.08%), Query Frame = 3
Query:  111 VYXGXXXXRWGKWVSEITXPRXKTRIWLGSFPXPEMAARAYDXAAYCLKGRKAQLNFPDKVEALPRPSTRAARDIQEAAAKAA 359
            VY G     WGKWVSEI  PR K+RIWLG+FP  EMAARA+D AA  +KG  A LNFP+  + LPRP + + +DIQ AAA+AA
Sbjct:   25 VYRGARMRSWGKWVSEIREPRKKSRIWLGTFPTAEMAARAHDVAALSIKGSSAILNFPELADFLPRPVSLSQQDIQAAAAEAA 107          
The following BLAST results are available for this feature:
BLAST of CF417436 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
ERF23_ARATH1.446e-4063.38Ethylene-responsive transcription factor ERF023 OS... [more]
DREB3_ARATH5.896e-2649.59Dehydration-responsive element-binding protein 3 O... [more]
TINY_ARATH7.701e-2658.59Ethylene-responsive transcription factor TINY OS=A... [more]
ERF34_ARATH2.739e-2354.74Ethylene-responsive transcription factor ERF034 OS... [more]
ERF39_ARATH1.041e-2248.39Ethylene-responsive transcription factor ERF039 OS... [more]
ERF36_ARATH1.359e-2254.26Ethylene-responsive transcription factor ERF036 OS... [more]
ERF37_ARATH2.564e-2154.26Ethylene-responsive transcription factor ERF037 OS... [more]
ERF38_ARATH3.348e-2150.00Ethylene-responsive transcription factor ERF038 OS... [more]
ERF43_ARATH4.373e-2155.81Ethylene-responsive transcription factor ERF043 OS... [more]
ERF42_ARATH5.711e-2159.04Ethylene-responsive transcription factor ERF042 OS... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-366 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-005_B12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417436 ID=CF417436; Name=CF417436; organism=Citrus sinensis; type=EST; length=636bp
AACAACCATACTACATACGACTGTAACATGAATTGACTGACAGTGCCACC
GCTACAGCCNCCGCAATTCACCGTAAATCCANCTCACAAACAGGCGGCAC
GCGACACCCTGTCTATCNCGGTGNCCNGAANANACGGTGGGGCAAATGGG
TGTCTGAAATTACANAGCCACGCNAAAAGACACGCATTTGGCTGGGTTCG
TTCCCCNNGCCGGAAATGGCAGCTAGGGCTTATGACNTTGCTGCGTATTG
CTTAAAGGGACGAAAAGCTCAGCTAAATTTTCCTGACAAGGTTGAGGCCT
TGCCACGACCTTCCACGCGTGCGGCTAGAGATATTCAGGAGGCNGCGGCT
AAGGCAGCACATGCCGGACTCATTTCATCAGAAAAGAGTGATGTCTCGGA
ATCGGACGGTGATGACTTTTGGGGGGAGATTGAGTTGCCTGAGTTGATGA
ATTGGTGGGTGGTACAGTAATTCTTGCGGATGGACGTTCAGCTGTGATAC
CACGTCCNCGTGGATTGATGAAGATGCACANCCACAGGANCAGCANCCGC
CGNNCATGGCATGTNTGNAGATTGAACGCTGAGGTNTGATACGCGTGTAC
GTTTGTATACATATTTTTAACCGGGCGGTCCATCTT
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