CF417444

Overview
NameCF417444
Unique NameCF417444
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length489
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13190 contig Csv1_Contig13190:630..1118. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417444 vs. ExPASy Swiss-Prot
Match: PSB5A_ARATH (Proteasome subunit beta type-5-A OS=Arabidopsis thaliana GN=PBE1 PE=1 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 6.573e-35
Identity = 68/89 (76.40%), Postives = 72/89 (80.90%), Query Frame = 2
Query:    2 RFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGVASVYYVGPNGWKKLSGDDVGELHYHYYPVTPSTVEQEMAE 268
            RFSVGSGSPYAYGVLDSGYK+DMS+          IYHATFRD ASGGVASVY+VGP GW KLSGDDVGELHYHYYPV P+T EQ M E
Sbjct:  182 RFSVGSGSPYAYGVLDSGYKYDMSVEEASELARRSIYHATFRDGASGGVASVYHVGPEGWTKLSGDDVGELHYHYYPVAPATAEQVMEE 270          
BLAST of CF417444 vs. ExPASy Swiss-Prot
Match: PSB5_SPIOL (Proteasome subunit beta type-5 OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 8.585e-35
Identity = 65/93 (69.89%), Postives = 77/93 (82.80%), Query Frame = 2
Query:    2 RFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGVASVYYVGPNGWKKLSGDDVGELHYHYYPVTPSTVEQEMAEVAGA 280
            RFSVGSGSPYAYGVLD+GYK+DM++          IYHAT+RD ASGGV SVY+VGP+GWKK++GDDVG+LH+ YYPV P+TVEQEM EV GA
Sbjct:  180 RFSVGSGSPYAYGVLDNGYKYDMTVEEASELARRAIYHATYRDGASGGVVSVYHVGPDGWKKVTGDDVGDLHFQYYPVVPATVEQEMVEVVGA 272          
BLAST of CF417444 vs. ExPASy Swiss-Prot
Match: PSB5B_ARATH (Proteasome subunit beta type-5-B OS=Arabidopsis thaliana GN=PBE2 PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 8.585e-35
Identity = 69/91 (75.82%), Postives = 71/91 (78.02%), Query Frame = 2
Query:    2 RFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGVASVYYVGPNGWKKLSGDDVGELHYHYYPVTPSTVEQEMAEVA 274
            RFSVGSGSPYAYGVLDSGYKFDMS+          IYHATFRD ASGGVASVY+VGP GW KLSGDDVGELHYHYYPV P T E  M E A
Sbjct:  182 RFSVGSGSPYAYGVLDSGYKFDMSVEEASELARRSIYHATFRDGASGGVASVYHVGPQGWTKLSGDDVGELHYHYYPVAPITAEHVMEEAA 272          
BLAST of CF417444 vs. ExPASy Swiss-Prot
Match: PSB5_DICDI (Proteasome subunit beta type-5 OS=Dictyostelium discoideum GN=psmB5 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.277e-18
Identity = 42/80 (52.50%), Postives = 54/80 (67.50%), Query Frame = 2
Query:    2 RFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGVASVYYVGPNGWKKLSGDDVGELHYHYYPVTP 241
            RFS GSGS YAYGVLD+G+K+DM+           +YHAT RDA SGG  +VY+V  +GWKK+S DD  +L+  YY + P
Sbjct:  187 RFSCGSGSTYAYGVLDTGFKWDMNDEEAYELGRRAVYHATHRDAYSGGAINVYHVQKDGWKKISSDDCFKLYQKYYNIVP 266          
BLAST of CF417444 vs. ExPASy Swiss-Prot
Match: PSB5_PONAB (Proteasome subunit beta type-5 OS=Pongo abelii GN=PSMB5 PE=2 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 5.232e-16
Identity = 38/79 (48.10%), Postives = 51/79 (64.56%), Query Frame = 2
Query:    5 FSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGVASVYYVGPNGWKKLSGDDVGELHYHYYPVTP 241
            FSVGSGS YAYGV+D GY +D+ +          IY AT+RDA SGG  ++Y+V  +GW ++S D+V +LH  Y   TP
Sbjct:  185 FSVGSGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQATYRDAYSGGAVNLYHVREDGWIRVSSDNVADLHEKYSGSTP 263          
BLAST of CF417444 vs. ExPASy Swiss-Prot
Match: PSB5_HUMAN (Proteasome subunit beta type-5 OS=Homo sapiens GN=PSMB5 PE=1 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 5.232e-16
Identity = 38/79 (48.10%), Postives = 51/79 (64.56%), Query Frame = 2
Query:    5 FSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGVASVYYVGPNGWKKLSGDDVGELHYHYYPVTP 241
            FSVGSGS YAYGV+D GY +D+ +          IY AT+RDA SGG  ++Y+V  +GW ++S D+V +LH  Y   TP
Sbjct:  185 FSVGSGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQATYRDAYSGGAVNLYHVREDGWIRVSSDNVADLHEKYSGSTP 263          
BLAST of CF417444 vs. ExPASy Swiss-Prot
Match: PSB5_MOUSE (Proteasome subunit beta type-5 OS=Mus musculus GN=Psmb5 PE=1 SV=3)

HSP 1 Score: 81.6481 bits (200), Expect = 1.988e-15
Identity = 37/78 (47.44%), Postives = 51/78 (65.38%), Query Frame = 2
Query:    5 FSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGVASVYYVGPNGWKKLSGDDVGELHYHYYPVT 238
            FSVGSGS YAYGV+D GY +D+ +          IY AT+RDA SGG  ++Y+V  +GW ++S D+V +LH  Y  V+
Sbjct:  185 FSVGSGSVYAYGVMDRGYSYDLKVEEAYDLARRAIYQATYRDAYSGGAVNLYHVREDGWIRVSSDNVADLHDKYSSVS 262          
BLAST of CF417444 vs. ExPASy Swiss-Prot
Match: PSB5_BOVIN (Proteasome subunit beta type-5 OS=Bos taurus GN=PSMB5 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.597e-15
Identity = 37/74 (50.00%), Postives = 49/74 (66.22%), Query Frame = 2
Query:    5 FSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGVASVYYVGPNGWKKLSGDDVGELHYHY 226
            FSVGSGS YAYGV+D GY +D+ +          IY AT+RDA SGG  S+Y+V  +GW ++S D+V +LH  Y
Sbjct:  185 FSVGSGSVYAYGVMDRGYSYDLEVEEAYDLARRAIYQATYRDAYSGGSVSLYHVREDGWIRVSSDNVADLHDKY 258          
BLAST of CF417444 vs. ExPASy Swiss-Prot
Match: PSB5_RAT (Proteasome subunit beta type-5 OS=Rattus norvegicus GN=Psmb5 PE=1 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 7.556e-15
Identity = 36/79 (45.57%), Postives = 50/79 (63.29%), Query Frame = 2
Query:    5 FSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGVASVYYVGPNGWKKLSGDDVGELHYHYYPVTP 241
            FSVGSGS YA+GV+D GY +D+ +          IY AT+RDA SGG  ++Y+V  +GW ++S D+V +LH  Y    P
Sbjct:  185 FSVGSGSVYAFGVMDRGYSYDLQVEEAYDLARRAIYQATYRDAYSGGAVNLYHVREDGWIRVSSDNVADLHDKYTSSIP 263          
BLAST of CF417444 vs. ExPASy Swiss-Prot
Match: PSB5_CHICK (Proteasome subunit beta type-5 (Fragment) OS=Gallus gallus GN=PSMB5 PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 1.425e-13
Identity = 37/74 (50.00%), Postives = 46/74 (62.16%), Query Frame = 2
Query:    5 FSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGVASVYYVGPNGWKKLSGDDVGELHYHY 226
            F+VGSGS YAYGVLD G + DM+           I+ A  RDA SGG  +VY+VGP GW+++S  DV  LH  Y
Sbjct:  181 FAVGSGSSYAYGVLDGGRRPDMATDEALELARRAIFQAARRDAYSGGSVTVYHVGPRGWRRVSSHDVAGLHDGY 254          
The following BLAST results are available for this feature:
BLAST of CF417444 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
PSB5A_ARATH6.573e-3576.40Proteasome subunit beta type-5-A OS=Arabidopsis th... [more]
PSB5_SPIOL8.585e-3569.89Proteasome subunit beta type-5 OS=Spinacia olerace... [more]
PSB5B_ARATH8.585e-3575.82Proteasome subunit beta type-5-B OS=Arabidopsis th... [more]
PSB5_DICDI3.277e-1852.50Proteasome subunit beta type-5 OS=Dictyostelium di... [more]
PSB5_PONAB5.232e-1648.10Proteasome subunit beta type-5 OS=Pongo abelii GN=... [more]
PSB5_HUMAN5.232e-1648.10Proteasome subunit beta type-5 OS=Homo sapiens GN=... [more]
PSB5_MOUSE1.988e-1547.44Proteasome subunit beta type-5 OS=Mus musculus GN=... [more]
PSB5_BOVIN2.597e-1550.00Proteasome subunit beta type-5 OS=Bos taurus GN=PS... [more]
PSB5_RAT7.556e-1545.57Proteasome subunit beta type-5 OS=Rattus norvegicu... [more]
PSB5_CHICK1.425e-1350.00Proteasome subunit beta type-5 (Fragment) OS=Gallu... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-374 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-005_C09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417444 ID=CF417444; Name=CF417444; organism=Citrus sinensis; type=EST; length=489bp
ACGGTTCTCTGTGGGATCAGGTTCACCATATGCTTATGGTGTATTGGACA
GCGGGTACAAGTTTGACATGTCTATTGAAGAAGCTGCGGAGTTGGCTAGA
AGAGCTATTTATCATGCGACATTCAGAGATGCAGCCAGTGGTGGTGTTGC
AAGCGTTTATTATGTGGGACCAAATGGATGGAAGAAGCTGTCTGGTGATG
ATGTTGGAGAGCTTCACTACCATTATTATCCAGTCACACCCAGTACAGTG
GAGCAAGAAATGGCTGAAGTCGCAGGGGCATAATTGAGTCTTGCTCAATT
TGGACCAGGTTTGAGATATTCCTCATATTCACAGATCCAGTGGAGGACTT
TACGGATATGCTTCTGAACTTTGTCAATGTACCTTGGGTTGATCCCAGAG
ATGACTCGTGAATTCAACCTAGTTAAGTTGATGCTTTAAGAACCCTGCAT
TTTCTTTTGGTATTTTCATTATGACAAGTACAGTTCTAT
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