CF417445

Overview
NameCF417445
Unique NameCF417445
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length673
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12177 contig Csv1_Contig12177:14..685. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417445 vs. ExPASy Swiss-Prot
Match: GI1L3_ARATH (Probable gibberellin receptor GID1L3 OS=Arabidopsis thaliana GN=GID1L3 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.042e-15
Identity = 45/147 (30.61%), Postives = 67/147 (45.58%), Query Frame = 3
Query:  153 KIPPSDDPTTGVRSKDVVISPEPPVSARIFIPYEA---------QNPNQNKL-PLLFYLRGGGFCRQSAFGPRYHNFCSVFSAQANAIVVSVEYGNFPDRPIPACYEDSWAALNWVASHVSGNGPEPWLNDHADFG-KVLIGGASAG 560
            K+P + +P  GV S DV+I  +  + +R++ P +A         QNP   ++ P++ +  GG F   SA    Y   C        A+VVSV Y   P+   P  Y+D WA L WV S         WL    D   ++ + G S+G
Sbjct:   52 KVPANANPVNGVFSFDVIIDRQTNLLSRVYRPADAGTSPSITDLQNPVDGEIVPVIVFFHGGSFAHSSANSAIYDTLCRRLVGLCGAVVVSVNYRRAPENRYPCAYDDGWAVLKWVNS-------SSWLRSKKDSKVRIFLAGDSSG 191          

HSP 2 Score: 28.1054 bits (61), Expect = 2.042e-15
Identity = 14/35 (40.00%), Postives = 20/35 (57.14%), Query Frame = 1
Query:  559 GGNIAHTLAFRVGSIGLPCVKLAGVIMVHPFFGGT 663
            GGNI H +A R        + + G I+++P FGGT
Sbjct:  191 GGNIVHNVAVRAVESR---IDVLGNILLNPMFGGT 222          
BLAST of CF417445 vs. ExPASy Swiss-Prot
Match: GI1L1_ARATH (Probable gibberellin receptor GID1L1 OS=Arabidopsis thaliana GN=GID1L1 PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 7.567e-15
Identity = 42/149 (28.19%), Postives = 60/149 (40.27%), Query Frame = 3
Query:  153 KIPPSDDPTTGVRSKDVVISPEPPVSARIFIPYEAQNPNQNKL------------PLLFYLRGGGFCRQSAFGPRYHNFCSVFSAQANAIVVSVEYGNFPDRPIPACYEDSWAALNWVASHVSGNGPEPWLNDHADFG-KVLIGGASAG 560
            K+  + +P  GV S DV+I     + +R++ P  A       +            P++ +  GG F   SA    Y   C         +VVSV Y   P+ P P  Y+D W ALNWV S         WL    D    + + G S+G
Sbjct:   52 KVTANANPVDGVFSFDVLIDRRINLLSRVYRPAYADQEQPPSILDLEKPVDGDIVPVILFFHGGSFAHSSANSAIYDTLCRRLVGLCKCVVVSVNYRRAPENPYPCAYDDGWIALNWVNS-------RSWLKSKKDSKVHIFLAGDSSG 193          

HSP 2 Score: 34.6538 bits (78), Expect = 7.567e-15
Identity = 16/34 (47.06%), Postives = 22/34 (64.71%), Query Frame = 1
Query:  559 GGNIAHTLAFRVGSIGLPCVKLAGVIMVHPFFGG 660
            GGNIAH +A R G  G   + + G I+++P FGG
Sbjct:  193 GGNIAHNVALRAGESG---IDVLGNILLNPMFGG 223          
BLAST of CF417445 vs. ExPASy Swiss-Prot
Match: GI1L2_ARATH (Probable gibberellin receptor GID1L2 OS=Arabidopsis thaliana GN=GID1L2 PE=1 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 2.799e-14
Identity = 46/150 (30.67%), Postives = 63/150 (42.00%), Query Frame = 3
Query:  153 KIPPSDDPTTGVRSKDVVISPEPPVSARIFIPYEAQNPNQNK-------------LPLLFYLRGGGFCRQSAFGPRYHNFCSVFSAQANAIVVSVEYGNFPDRPIPACYEDSWAALNWVASHVSGNGPEPWLNDHADFG-KVLIGGASAG 560
            K+P +  P  GV S D V S    ++ RI+ P    +  ++              +P+L +  GG F   SA    Y  FC         +VVSV+Y   P+   P  Y+D W ALNWV S V       WL    D    V + G S+G
Sbjct:   52 KVPANSFPLDGVFSFDHVDSTTNLLT-RIYQPASLLHQTRHGTLELTKPLSTTEIVPVLIFFHGGSFTHSSANSAIYDTFCRRLVTICGVVVVSVDYRRSPEHRYPCAYDDGWNALNWVKSRV-------WLQSGKDSNVYVYLAGDSSG 193          

HSP 2 Score: 36.5798 bits (83), Expect = 2.799e-14
Identity = 18/34 (52.94%), Postives = 23/34 (67.65%), Query Frame = 1
Query:  559 GGNIAHTLAFRVGSIGLPCVKLAGVIMVHPFFGG 660
            GGNIAH +A R  + G   VK+ G I++HP FGG
Sbjct:  193 GGNIAHNVAVRATNEG---VKVLGNILLHPMFGG 223          
BLAST of CF417445 vs. ExPASy Swiss-Prot
Match: GID1_ORYSJ (Gibberellin receptor GID1 OS=Oryza sativa subsp. japonica GN=GID1 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.928e-11
Identity = 44/175 (25.14%), Postives = 67/175 (38.29%), Query Frame = 3
Query:  153 KIPPSDDPTTGVRSKDVVISPEPPVSARIF-------------------IPYEAQNPNQNKLPLLFYLRGGGFCRQSAFGPRYHNFCSVFSAQANAIVVSVEYGNFPDRPIPACYEDSWAALNWVASHVSGNGPEPWLNDHADF-GKVLIGGASAGREYCTHSGVSGRVNRVTLC 617
            ++P +  P  GV S D +I     +  RI+                   + +    P     P++ +  GG F   SA    Y + C  F   +  +VVSV Y   P+   P  Y+D W AL WV S       +P++    D   +V + G S+G     H  V      V +C
Sbjct:   52 RVPANARPLEGVSSFDHIIDQSVGLEVRIYRAAAEGDAEEGAAAVTRPILEFLTDAPAAEPFPVIIFFHGGSFVHSSASSTIYDSLCRRFVKLSKGVVVSVNYRRAPEHRYPCAYDDGWTALKWVMS-------QPFMRSGGDAQARVFLSGDSSGGNIAHHVAVRAADEGVKVC 219          
The following BLAST results are available for this feature:
BLAST of CF417445 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
GI1L3_ARATH2.042e-1530.61Probable gibberellin receptor GID1L3 OS=Arabidopsi... [more]
GI1L1_ARATH7.567e-1528.19Probable gibberellin receptor GID1L1 OS=Arabidopsi... [more]
GI1L2_ARATH2.799e-1430.67Probable gibberellin receptor GID1L2 OS=Arabidopsi... [more]
GID1_ORYSJ5.928e-1125.14Gibberellin receptor GID1 OS=Oryza sativa subsp. j... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-375 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-005_C10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417445 ID=CF417445; Name=CF417445; organism=Citrus sinensis; type=EST; length=673bp
CAAAGAACCCTTCTTCTCTTTTATTATTTTATTTCAAACCGAAGCTTCAA
ATTAAAAACATGGCATCAAGCGACTCGGAAATTGCAAAAGAATTCCGATT
CTTCCGGGTTTACAAAGACGGCCGGGTTGAGTTATTCGAACCCGACTGCG
AAAAGATCCCACCCTCCGATGACCCCACCACCGGCGTCCGATCCAAAGAC
GTTGTTATTTCGCCCGAACCACCCGTGTCTGCTCGTATCTTCATTCCGTA
TGAAGCCCAAAACCCTAACCAGAATAAGCTCCCTCTCTTATTCTACTTGC
GTGGCGGCGGATTCTGCAGGCAGTCCGCCTTTGGTCCGCGGTATCATAAT
TTCTGTAGCGTCTTTTCTGCACAAGCTAATGCTATAGTGGTGTCCGTAGA
ATATGGGAATTTCCCGGATCGACCCATACCCGCTTGTTACGAAGACTCGT
GGGCTGCACTCAACTGGGTGGCGTCCCATGTCAGCGGAAATGGACCCGAG
CCATGGTTGAATGATCACGCTGATTTTGGGAAAGTTTTGATTGGAGGAGC
CAGCGCTGGGAGGGAATATTGCACACACTCTGGCGTTTCGGGTCGGGTCA
ATCGGGTTACCTTGTGTAAAGTTGGCTGGGGTGATCATGGTGCATCCATT
TTTCGGTGGCACTAGTCCTGAAG
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