CF417446

Overview
NameCF417446
Unique NameCF417446
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length525
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2605 contig Csv1_Contig2605:218..742. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417446 vs. ExPASy Swiss-Prot
Match: TRXH_RICCO (Thioredoxin H-type OS=Ricinus communis PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 5.432e-52
Identity = 96/109 (88.07%), Postives = 105/109 (96.33%), Query Frame = 2
Query:    2 IGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKHLATAS 328
            IGCHTVEAWNEQLQK N+TK L+VVDFTASWCGPCRFIAPFLAELAKKLPNV FLKVDVDELK+VA +WAVE+MPTFMFLKEGKI+DKVVG+KK+ELQQTIAKH+ATAS
Sbjct:    9 IGCHTVEAWNEQLQKGNDTKGLIVVDFTASWCGPCRFIAPFLAELAKKLPNVTFLKVDVDELKTVAHEWAVESMPTFMFLKEGKIMDKVVGAKKDELQQTIAKHMATAS 117          
BLAST of CF417446 vs. ExPASy Swiss-Prot
Match: TRXH1_ARATH (Thioredoxin H-type 1 OS=Arabidopsis thaliana GN=TRX1 PE=1 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 1.479e-49
Identity = 91/106 (85.85%), Postives = 100/106 (94.34%), Query Frame = 2
Query:    2 IGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKHLA 319
            I CHTVE WNEQLQK+NE+K LVVVDFTASWCGPCRFIAPF A+LAKKLPNVLFLKVD DELKSVA+DWA++AMPTFMFLKEGKI+DKVVG+KK+ELQ TIAKHLA
Sbjct:    9 IACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKKDELQSTIAKHLA 114          
BLAST of CF417446 vs. ExPASy Swiss-Prot
Match: TRXH2_TOBAC (Thioredoxin H-type 2 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 8.974e-47
Identity = 88/109 (80.73%), Postives = 99/109 (90.83%), Query Frame = 2
Query:    2 IGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKHLATAS 328
            IG HTV+AWNE LQK  + K+L+VVDFTASWCGPC+FIA F AELAKK+P V FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVG+KK+ELQQTIAKH+++ S
Sbjct:    8 IGVHTVDAWNEHLQKGIDDKKLIVVDFTASWCGPCKFIASFYAELAKKMPTVTFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKDELQQTIAKHISSTS 116          
BLAST of CF417446 vs. ExPASy Swiss-Prot
Match: TRXH1_TOBAC (Thioredoxin H-type 1 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 3.529e-43
Identity = 79/108 (73.15%), Postives = 96/108 (88.89%), Query Frame = 2
Query:    5 GCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKHLATAS 328
            GCH VE WNE  +K  ETK+LVVVDFTASWCGPCRFIAP LA++AKK+P+V+FLKVDVDELK+V+ +W+VEAMPTF+F+K+GK VD+VVG+KKEELQQTI KH A A+
Sbjct:   16 GCHKVEEWNEYFKKGVETKKLVVVDFTASWCGPCRFIAPILADIAKKMPHVIFLKVDVDELKTVSAEWSVEAMPTFVFIKDGKEVDRVVGAKKEELQQTIVKHAAPAT 123          
BLAST of CF417446 vs. ExPASy Swiss-Prot
Match: TRXH5_ARATH (Thioredoxin H-type 5 OS=Arabidopsis thaliana GN=TRX5 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 7.127e-36
Identity = 63/104 (60.58%), Postives = 88/104 (84.62%), Query Frame = 2
Query:    2 IGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKH 313
            I CHT+E WNE+++ +NE+K+L+V+DFTASWC PCRFIAP  AE+AKK  NV+F K+DVDEL++VA ++ VEAMPTF+F+KEG I+D+VVG+ K+E+ + + KH
Sbjct:    8 IACHTLEVWNEKVKDANESKKLIVIDFTASWCPPCRFIAPVFAEMAKKFTNVVFFKIDVDELQAVAQEFKVEAMPTFVFMKEGNIIDRVVGAAKDEINEKLMKH 111          
BLAST of CF417446 vs. ExPASy Swiss-Prot
Match: TRXH_PICMA (Thioredoxin H-type OS=Picea mariana GN=SB09 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 2.994e-34
Identity = 63/107 (58.88%), Postives = 84/107 (78.50%), Query Frame = 2
Query:    8 CHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKHLATAS 328
            CH+ E W  +LQ++ +TK+LV VDFTA+WCGPCR I P   EL+KK P + FLKVDVDEL+ VA +W VEAMPTF+F+K+GK VDKVVG+KK++L++ +A   A A+
Sbjct:    9 CHSTEGWRSKLQEAIDTKRLVAVDFTATWCGPCRVIGPVFVELSKKFPEIFFLKVDVDELRDVAQEWDVEAMPTFIFIKDGKAVDKVVGAKKDDLERKVAALAAAAT 115          
BLAST of CF417446 vs. ExPASy Swiss-Prot
Match: TRXH_FAGES (Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.941e-33
Identity = 61/104 (58.65%), Postives = 85/104 (81.73%), Query Frame = 2
Query:    2 IGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKH 313
            I CHTV+ WNE+ QK+ ++ +L+V+DFTASWCGPCR I P+++ELAKK P+V F KVDVD+LK VA ++ VEAMP+F+ LKEG+ V+++VG++K+EL   IA H
Sbjct:    8 IACHTVQEWNEKFQKAKDSGKLIVIDFTASWCGPCRVITPYVSELAKKFPHVAFFKVDVDDLKDVAEEYKVEAMPSFVILKEGQEVERIVGARKDELLHKIAVH 111          
BLAST of CF417446 vs. ExPASy Swiss-Prot
Match: TRXH_ORYSJ (Thioredoxin H-type OS=Oryza sativa subsp. japonica GN=TRXH PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 3.311e-33
Identity = 63/110 (57.27%), Postives = 83/110 (75.45%), Query Frame = 2
Query:    2 IGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKHLATASA 331
            I CH  + ++ Q+ K+ E  ++V++DFTASWCGPCRFIAP  AE AKK P  +FLKVDVDELK VA  + VEAMPTF+F+K+G   DKVVG++K++LQ TI KH+   +A
Sbjct:    9 IACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKHVGATAA 118          
BLAST of CF417446 vs. ExPASy Swiss-Prot
Match: TRXH_ORYSI (Thioredoxin H-type OS=Oryza sativa subsp. indica GN=TRXH PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 3.311e-33
Identity = 63/110 (57.27%), Postives = 83/110 (75.45%), Query Frame = 2
Query:    2 IGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKHLATASA 331
            I CH  + ++ Q+ K+ E  ++V++DFTASWCGPCRFIAP  AE AKK P  +FLKVDVDELK VA  + VEAMPTF+F+K+G   DKVVG++K++LQ TI KH+   +A
Sbjct:    9 IACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKHVGATAA 118          
BLAST of CF417446 vs. ExPASy Swiss-Prot
Match: TRXH3_ARATH (Thioredoxin H-type 3 OS=Arabidopsis thaliana GN=TRX3 PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.643e-32
Identity = 63/110 (57.27%), Postives = 86/110 (78.18%), Query Frame = 2
Query:    2 IGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKHLATASA 331
            I CHTVE W E+L+ +NE+K+L+V+DFTA+WC PCRFIAP  A+LAKK  +V+F KVDVDEL +VA ++ V+AMPTF+F+KEG+I + VVG+ KEE+   + KH    +A
Sbjct:    8 IACHTVEDWTEKLKAANESKKLIVIDFTATWCPPCRFIAPVFADLAKKHLDVVFFKVDVDELNTVAEEFKVQAMPTFIFMKEGEIKETVVGAAKEEIIANLEKHKTVVAA 117          
The following BLAST results are available for this feature:
BLAST of CF417446 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
TRXH_RICCO5.432e-5288.07Thioredoxin H-type OS=Ricinus communis PE=3 SV=1[more]
TRXH1_ARATH1.479e-4985.85Thioredoxin H-type 1 OS=Arabidopsis thaliana GN=TR... [more]
TRXH2_TOBAC8.974e-4780.73Thioredoxin H-type 2 OS=Nicotiana tabacum PE=3 SV=... [more]
TRXH1_TOBAC3.529e-4373.15Thioredoxin H-type 1 OS=Nicotiana tabacum PE=2 SV=... [more]
TRXH5_ARATH7.127e-3660.58Thioredoxin H-type 5 OS=Arabidopsis thaliana GN=TR... [more]
TRXH_PICMA2.994e-3458.88Thioredoxin H-type OS=Picea mariana GN=SB09 PE=2 S... [more]
TRXH_FAGES1.941e-3358.65Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV... [more]
TRXH_ORYSJ3.311e-3357.27Thioredoxin H-type OS=Oryza sativa subsp. japonica... [more]
TRXH_ORYSI3.311e-3357.27Thioredoxin H-type OS=Oryza sativa subsp. indica G... [more]
TRXH3_ARATH1.643e-3257.27Thioredoxin H-type 3 OS=Arabidopsis thaliana GN=TR... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-376 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-005_C11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417446 ID=CF417446; Name=CF417446; organism=Citrus sinensis; type=EST; length=525bp
CATCGGGTGCCACACCGTTGAGGCCTGGAACGAGCAGCTCCAGAAGAGCA
ATGAAACCAAACAGCTGGTTGTTGTTGATTTCACTGCTTCGTGGTGCGGA
CCATGCCGTTTCATTGCTCCTTTCTTGGCAGAGCTGGCCAAGAAACTGCC
TAATGTCCTGTTTCTGAAGGTTGATGTGGATGAACTGAAGAGTGTTGCCA
CTGACTGGGCAGTGGAGGCCATGCCAACTTTCATGTTCCTGAAAGAGGGG
AAGATTGTGGACAAGGTGGTTGGATCAAAGAAAGAGGAACTGCAGCAGAC
TATTGCCAAGCATCTGGCAACTGCCTCTGCCTAATAAGTTATAACTATCC
TCCTGCCTTTTGGCTTTAGAGGCTATAGACCTCAATATATGCTATCAGTC
TGTAATTTACTTATTAGAGTGGTTATGGGATTGTGTTTGTTTGTGTGTTT
GAATATTCCGTAATTTACTGTTCTATGAAGCTCATACTGTGGTCTTTACA
ATAATTTAATTTCATATTTGGGGTA
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