CF417448

Overview
NameCF417448
Unique NameCF417448
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12758 contig Csv1_Contig12758:78..757. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417448 vs. ExPASy Swiss-Prot
Match: RL15_PETHY (60S ribosomal protein L15 OS=Petunia hybrida GN=RPL15 PE=2 SV=1)

HSP 1 Score: 327.02 bits (837), Expect = 1.022e-89
Identity = 160/192 (83.33%), Postives = 164/192 (85.42%), Query Frame = 2
Query:    2 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATW 577
            MGAY YVSELWRKKQSDVMRFLQRVRCWEYRQ PSIVRVTRPTRPDKARRLGYKAKQ                     IVYGKPTNQGVTQLKFQR+KRSVAEERAGRKLGGL+VLNSYWINEDSTYKYFEVILVD AH AIRNDPRINWIC PVHKHRELRGLTSAGKKYRGLRG+GHLH+KA PSRRA W
Sbjct:    1 MGAYTYVSELWRKKQSDVMRFLQRVRCWEYRQLPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVKRGGRKRPVPKGIVYGKPTNQGVTQLKFQRTKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDQAHAAIRNDPRINWICNPVHKHRELRGLTSAGKKYRGLRGRGHLHNKAPPSRRANW 192          

HSP 2 Score: 25.0238 bits (53), Expect = 1.022e-89
Identity = 11/12 (91.67%), Postives = 11/12 (91.67%), Query Frame = 3
Query:  579 KRNQTLSLRRYR 614
            KRNQTLSL RYR
Sbjct:  193 KRNQTLSLPRYR 204          
BLAST of CF417448 vs. ExPASy Swiss-Prot
Match: RL151_ARATH (60S ribosomal protein L15-1 OS=Arabidopsis thaliana GN=RPL15A PE=2 SV=1)

HSP 1 Score: 324.324 bits (830), Expect = 3.610e-88
Identity = 158/200 (79.00%), Postives = 169/200 (84.50%), Query Frame = 2
Query:    2 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWXEEPNSLA 601
            MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQ PSIVR+ RPTRPDKARRLGYKAKQ                     IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGL+V+NSYW+NEDSTYKY+E+ILVD AHNA+RNDPRINWIC PVHKHRELRGLTS GKK RGLRGKGH +HK RPSRRATW ++ NSL+
Sbjct:    1 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQGFVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYWLNEDSTYKYYEIILVDPAHNAVRNDPRINWICNPVHKHRELRGLTSEGKKNRGLRGKGHNNHKNRPSRRATW-KKNNSLS 199          
BLAST of CF417448 vs. ExPASy Swiss-Prot
Match: RL152_ARATH (60S ribosomal protein L15-2 OS=Arabidopsis thaliana GN=RPL15B PE=2 SV=1)

HSP 1 Score: 323.553 bits (828), Expect = 6.158e-88
Identity = 157/200 (78.50%), Postives = 169/200 (84.50%), Query Frame = 2
Query:    2 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWXEEPNSLA 601
            MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQ PSIVR+ RPTRPDKARRLGYKAKQ                     IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGL+V+NSYW+NEDSTYKY+E+ILVD AHNA+RNDPRINWIC PVHKHRELRGLTS GKK RGLRGKGH +HK RPSRRATW ++ NS++
Sbjct:    1 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQGFVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYWLNEDSTYKYYEIILVDPAHNAVRNDPRINWICNPVHKHRELRGLTSEGKKNRGLRGKGHNNHKNRPSRRATW-KKNNSIS 199          
BLAST of CF417448 vs. ExPASy Swiss-Prot
Match: RL15B_PICMA (60S ribosomal protein L15-2 OS=Picea mariana GN=SB62 PE=2 SV=1)

HSP 1 Score: 315.464 bits (807), Expect = 1.744e-86
Identity = 149/192 (77.60%), Postives = 160/192 (83.33%), Query Frame = 2
Query:    2 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATW 577
            MGAYKY+ ELW+KKQSDVMRFLQRVRCWEYRQ P IVR+T PTRPDKARRLGYKAKQ                     IVYGKP NQG+TQLKFQRS RSVAEERAGRKLGGL+VLNSYWIN+DSTYKY+EV+LVD AH  IRNDPRINWIC  VHKHRELRGLTSAGKKYRGLRG+GHL+HKARPS+RATW
Sbjct:    1 MGAYKYIEELWKKKQSDVMRFLQRVRCWEYRQLPGIVRITHPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVYGKPKNQGITQLKFQRSLRSVAEERAGRKLGGLRVLNSYWINQDSTYKYYEVVLVDQAHTVIRNDPRINWICNAVHKHRELRGLTSAGKKYRGLRGRGHLYHKARPSKRATW 192          

HSP 2 Score: 25.7942 bits (55), Expect = 1.744e-86
Identity = 11/12 (91.67%), Postives = 11/12 (91.67%), Query Frame = 3
Query:  579 KRNQTLSLRRYR 614
            KRN TLSLRRYR
Sbjct:  193 KRNNTLSLRRYR 204          
BLAST of CF417448 vs. ExPASy Swiss-Prot
Match: RL15A_PICMA (60S ribosomal protein L15-1 OS=Picea mariana GN=SB61 PE=2 SV=1)

HSP 1 Score: 314.309 bits (804), Expect = 3.872e-86
Identity = 149/192 (77.60%), Postives = 162/192 (84.38%), Query Frame = 2
Query:    2 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATW 577
            MGAYKY+ ELW+KKQSDVMRFLQRVRCWE+RQ P IVRVTRP+RPDKARRLGYKAKQ                     IVYGKP NQG+TQLKFQRS RSVAEERAGRKLGGL+VLNSYWIN+DSTYKY+E+ILVD AH+AIR DPRINWIC  VHKHRELRGLTSAGKKYRGLRG+GHL+HKARPS+RATW
Sbjct:    1 MGAYKYIEELWKKKQSDVMRFLQRVRCWEFRQLPGIVRVTRPSRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVYGKPKNQGITQLKFQRSLRSVAEERAGRKLGGLRVLNSYWINQDSTYKYYEIILVDQAHSAIRKDPRINWICNAVHKHRELRGLTSAGKKYRGLRGRGHLYHKARPSKRATW 192          

HSP 2 Score: 25.7942 bits (55), Expect = 3.872e-86
Identity = 11/12 (91.67%), Postives = 11/12 (91.67%), Query Frame = 3
Query:  579 KRNQTLSLRRYR 614
            KRN TLSLRRYR
Sbjct:  193 KRNNTLSLRRYR 204          
BLAST of CF417448 vs. ExPASy Swiss-Prot
Match: RL15_RAT (60S ribosomal protein L15 OS=Rattus norvegicus GN=Rpl15 PE=1 SV=2)

HSP 1 Score: 247.669 bits (631), Expect = 4.294e-65
Identity = 124/193 (64.25%), Postives = 137/193 (70.98%), Query Frame = 2
Query:    2 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATW 577
            MGAYKY+ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQ                       YGKP + GV QLKF RS +SVAEERAGR  G L+VLNSYW+ EDSTYK+FEVIL+D  H AIR +P   WI KPVHKHRE+RGLTSAG+K RGL GKGH  HH    SRRA W
Sbjct:    1 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGL-GKGHKFHHTIGGSRRAAW 192          
BLAST of CF417448 vs. ExPASy Swiss-Prot
Match: RL15_PONAB (60S ribosomal protein L15 OS=Pongo abelii GN=RPL15 PE=2 SV=3)

HSP 1 Score: 247.669 bits (631), Expect = 4.294e-65
Identity = 124/193 (64.25%), Postives = 137/193 (70.98%), Query Frame = 2
Query:    2 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATW 577
            MGAYKY+ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQ                       YGKP + GV QLKF RS +SVAEERAGR  G L+VLNSYW+ EDSTYK+FEVIL+D  H AIR +P   WI KPVHKHRE+RGLTSAG+K RGL GKGH  HH    SRRA W
Sbjct:    1 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGL-GKGHKFHHTIGGSRRAAW 192          
BLAST of CF417448 vs. ExPASy Swiss-Prot
Match: RL15_MOUSE (60S ribosomal protein L15 OS=Mus musculus GN=Rpl15 PE=2 SV=4)

HSP 1 Score: 247.669 bits (631), Expect = 4.294e-65
Identity = 124/193 (64.25%), Postives = 137/193 (70.98%), Query Frame = 2
Query:    2 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATW 577
            MGAYKY+ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQ                       YGKP + GV QLKF RS +SVAEERAGR  G L+VLNSYW+ EDSTYK+FEVIL+D  H AIR +P   WI KPVHKHRE+RGLTSAG+K RGL GKGH  HH    SRRA W
Sbjct:    1 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGL-GKGHKFHHTIGGSRRAAW 192          
BLAST of CF417448 vs. ExPASy Swiss-Prot
Match: RL15_MACFA (60S ribosomal protein L15 OS=Macaca fascicularis GN=RPL15 PE=2 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 4.294e-65
Identity = 124/193 (64.25%), Postives = 137/193 (70.98%), Query Frame = 2
Query:    2 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATW 577
            MGAYKY+ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQ                       YGKP + GV QLKF RS +SVAEERAGR  G L+VLNSYW+ EDSTYK+FEVIL+D  H AIR +P   WI KPVHKHRE+RGLTSAG+K RGL GKGH  HH    SRRA W
Sbjct:    1 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGL-GKGHKFHHTIGGSRRAAW 192          
BLAST of CF417448 vs. ExPASy Swiss-Prot
Match: RL15_HUMAN (60S ribosomal protein L15 OS=Homo sapiens GN=RPL15 PE=1 SV=2)

HSP 1 Score: 247.669 bits (631), Expect = 4.294e-65
Identity = 124/193 (64.25%), Postives = 137/193 (70.98%), Query Frame = 2
Query:    2 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATW 577
            MGAYKY+ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQ                       YGKP + GV QLKF RS +SVAEERAGR  G L+VLNSYW+ EDSTYK+FEVIL+D  H AIR +P   WI KPVHKHRE+RGLTSAG+K RGL GKGH  HH    SRRA W
Sbjct:    1 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGL-GKGHKFHHTIGGSRRAAW 192          
The following BLAST results are available for this feature:
BLAST of CF417448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93
Match NameE-valueIdentityDescription
RL15_PETHY1.022e-8983.3360S ribosomal protein L15 OS=Petunia hybrida GN=RP... [more]
RL151_ARATH3.610e-8879.0060S ribosomal protein L15-1 OS=Arabidopsis thalian... [more]
RL152_ARATH6.158e-8878.5060S ribosomal protein L15-2 OS=Arabidopsis thalian... [more]
RL15B_PICMA1.744e-8677.6060S ribosomal protein L15-2 OS=Picea mariana GN=SB... [more]
RL15A_PICMA3.872e-8677.6060S ribosomal protein L15-1 OS=Picea mariana GN=SB... [more]
RL15_RAT4.294e-6564.2560S ribosomal protein L15 OS=Rattus norvegicus GN=... [more]
RL15_PONAB4.294e-6564.2560S ribosomal protein L15 OS=Pongo abelii GN=RPL15... [more]
RL15_MOUSE4.294e-6564.2560S ribosomal protein L15 OS=Mus musculus GN=Rpl15... [more]
RL15_MACFA4.294e-6564.2560S ribosomal protein L15 OS=Macaca fascicularis G... [more]
RL15_HUMAN4.294e-6564.2560S ribosomal protein L15 OS=Homo sapiens GN=RPL15... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-378 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-005_D02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417448 ID=CF417448; Name=CF417448; organism=Citrus sinensis; type=EST; length=681bp
AATGGGTGCATACAAGTACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGG
ATGTGATGAGGTTCTTGCAGAGGGTGAGGTGCTGGGAGTACCGTCAGCAC
CCTTCCATCGTCCGCGTCACCCGTCCCACTCGCCCCGACAAGGCTCGCCG
CTTGGGCTACAAGGCCAAGCAGGGTTATGTCGTTTATCGTGTGCGTGTAA
GACGTGGAGGACGAAAGAGACCAGTTCCCAAGGGTATTGTATATGGTAAA
CCGACAAACCAGGGTGTCACTCAGCTTAAATTCCAGCGCAGCAAGCGTTC
AGTTGCTGAGGAACGTGCCGGTCGTAAGCTTGGTGGCCTTAAGGTTCTCA
ACTCATACTGGATCAATGAGGATTCAACTTACAAGTACTTTGAGGTAATC
CTGGTGGATGCTGCCCACAATGCAATCCGCAATGACCCCAGGATCAACTG
GATCTGTAAGCCTGTCCACAAGCACAGGGAGCTTCGTGGACTCACTTCTG
CTGGGAAGAAGTACAGAGGTCTCCGAGGAAAGGGTCACTTGCACCACAAG
GCACGACCTTCAAGAAGGGCAACCTGGNAAGAGGAACCAAACTCTCTCGC
TCAGGCGTTACCGTTAAACTTCTGTATTGNTTACTTTGTGTTTTTCACAT
TATCAACCTAGTTTAATTGCTGTTGAGTTTG
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