CF417450

Overview
NameCF417450
Unique NameCF417450
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length643
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF417450_ssr209 microsatellite CF417450_ssr209:209..218. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1790 contig Csv1_Contig1790:36..678. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF417450 vs. ExPASy Swiss-Prot
Match: SERIC_MONBE (Probable serine incorporator OS=Monosiga brevicollis GN=serinc PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.209e-11
Identity = 51/168 (30.36%), Postives = 76/168 (45.24%), Query Frame = 1 
Query:  178 SARIAYCGLFALSLIVSWIL--REVAAPLMEKLPWINHFHKTPSR----------------EWFETDAVLRVSLGNFLFFTILSILMVGVKNQKDPRDSLHHGGWMMKIICWCLLVIFMFFLPNE--IVSFYESISKFGSGXXXXXXXXXXXXXXHRWNDTWVGYDEQ 621
            S RI Y  LF LS I +WI+  ++V+  LM+    +  +H T  R                 W E   V+R+     LF   LS+  +GV + KDPR SLH+G W +K+I     ++  FF+ N   I + +  I   G+               + WND+WVG  E+
Sbjct:   43 STRITYAILFFLSSIAAWIMLDKDVSKGLMK----VCCYHSTLFRLVLFTQPAIKTTTNVVPWGEL-GVMRIMFSVCLFHLFLSLCTIGVSSSKDPRSSLHNGMWFIKLILLVGAMVGSFFISNSFFIGASWSWIGLVGAVLFMIVQFILLVDFAYSWNDSWVGKLEE 205
The following BLAST results are available for this feature:
BLAST of CF417450 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SERIC_MONBE7.209e-1130.36Probable serine incorporator OS=Monosiga brevicoll... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-380 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-005_D04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417450 ID=CF417450; Name=CF417450; organism=Citrus sinensis; type=EST; length=643bp
CTTAGCGCTTGCGATCATCGCCTTTTCTATTTCACTTTCCCTTTCTCCTT
CAAATTCAATCAAATATCCCAGTTTGTGAGAGAAGAGAAGATGTGGGCGG
CGTCTTGTCTTGCGTCGTGCTGTGCGGCGTGCGCGTGTGACGCGTGTCGC
TCGGCGGTGTCGGGGATCAGCAGGAGGTCAGCTAGGATTGCTTACTGCGG
GCTGTTTGCTCTCTCTCTGATCGTTTCGTGGATTCTTCGTGAAGTCGCCG
CTCCACTCATGGAGAAGCTCCCTTGGATTAATCATTTTCATAAGACACCT
AGCAGGGAGTGGTTTGAAACTGATGCTGTTCTGCGAGTTAGCTTGGGAAA
TTTTCTCTTTTTCACTATTTTGTCAATTTTAATGGTTGGCGTGAAAAATC
AGAAAGATCCCCGTGATAGCTTGCACCACGGTGGATGGATGATGAAAATT
ATTTGTTGGTGCCTTCTGGTGATCTTTATGTTTTTCCTTCCAAATGAGAT
TGTCAGCTTCTATGAGTCAATATCAAAGTTTGGCTCGGGTTTGTTTCTTC
TTGTTCAAGTTGTCCTTTTATTGGACTTTGTTCACAGATGGAATGACACG
TGGGTTGGATATGATGAGCAGTTCTGGTATGTTGCCCCTATTG
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