CF417507
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF417507 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2) HSP 1 Score: 336.65 bits (862), Expect = 2.183e-107 Identity = 160/175 (91.43%), Postives = 166/175 (94.86%), Query Frame = 1 Query: 10 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSTPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 534 MATSAIQQSAFAGQTAL+QSNE V K+G GGR++MRRTVKS P SIWYGPDRPKYLGPFS+Q PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPEILSKNGVKFGEAVWFKAG+QIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR Sbjct: 1 MATSAIQQSAFAGQTALKQSNELVCKIGAVGGGRVSMRRTVKSAPTSIWYGPDRPKYLGPFSDQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 175 HSP 2 Score: 74.3294 bits (181), Expect = 2.183e-107 Identity = 36/45 (80.00%), Postives = 38/45 (84.44%), Query Frame = 3 Query: 552 LVKDLTHFXPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMF 686 L + L PGGAFDPLGLADDPD FAELKVKE+KNGRLAMFSMF Sbjct: 181 LGEGLDPIYPGGAFDPLGLADDPDAFAELKVKEIKNGRLAMFSMF 225
BLAST of CF417507 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1) HSP 1 Score: 330.487 bits (846), Expect = 3.419e-105 Identity = 159/175 (90.86%), Postives = 163/175 (93.14%), Query Frame = 1 Query: 10 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSTPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 534 MATSAIQQSAFAGQTAL+ NE VRK+G GGR TMRRTVKS PQSIWYG DRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPEILSKNGV FGEAVWFKAG+QIFSEGGLDYLGNPNLIHAQSILAIWA QVVLMGFVEGYR Sbjct: 1 MATSAIQQSAFAGQTALKSQNELVRKIGSFGGGRATMRRTVKSAPQSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAAQVVLMGFVEGYR 175 HSP 2 Score: 73.1738 bits (178), Expect = 3.419e-105 Identity = 35/45 (77.78%), Postives = 38/45 (84.44%), Query Frame = 3 Query: 552 LVKDLTHFXPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMF 686 L + L PGGAFDPLGLADDP+ FAELKVKE+KNGRLAMFSMF Sbjct: 181 LGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMF 225
BLAST of CF417507 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1) HSP 1 Score: 328.946 bits (842), Expect = 9.906e-105 Identity = 156/175 (89.14%), Postives = 164/175 (93.71%), Query Frame = 1 Query: 10 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSTPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 534 MATSAI+QSAFAGQTAL+ NE VRK+G +GGR TMRRTVKS PQSIWYG DRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPEILSKNGVKFGEAVWFKAG+QIFSEGGLDYLGNPNLIHAQSILA+WA QVVLMG +EGYR Sbjct: 1 MATSAIEQSAFAGQTALKSQNELVRKIGSFNGGRATMRRTVKSAPQSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWASQVVLMGLIEGYR 175 HSP 2 Score: 73.1738 bits (178), Expect = 9.906e-105 Identity = 35/45 (77.78%), Postives = 38/45 (84.44%), Query Frame = 3 Query: 552 LVKDLTHFXPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMF 686 L + L PGGAFDPLGLADDP+ FAELKVKE+KNGRLAMFSMF Sbjct: 181 LGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMF 225
BLAST of CF417507 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1) HSP 1 Score: 326.635 bits (836), Expect = 4.886e-104 Identity = 156/175 (89.14%), Postives = 161/175 (92.00%), Query Frame = 1 Query: 10 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSTPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 534 MAT AIQQSAF GQ + NEF+RKVG GRITMRRTVKS PQSIWYG DRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPEILSKNGVKFGEAVWFKAG+QIFSEGGLDYLGNPNL+HAQSILAIWACQVVLMGFVEGYR Sbjct: 1 MATCAIQQSAFVGQAVGKSQNEFIRKVGNFGEGRITMRRTVKSAPQSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYR 175 HSP 2 Score: 73.1738 bits (178), Expect = 4.886e-104 Identity = 35/45 (77.78%), Postives = 38/45 (84.44%), Query Frame = 3 Query: 552 LVKDLTHFXPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMF 686 L + L PGGAFDPLGLADDP+ FAELKVKE+KNGRLAMFSMF Sbjct: 181 LGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMF 225
BLAST of CF417507 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1) HSP 1 Score: 321.627 bits (823), Expect = 3.144e-103 Identity = 153/175 (87.43%), Postives = 160/175 (91.43%), Query Frame = 1 Query: 10 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSTPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 534 MATSAIQQSAF G+T LRQ NEF+RK G R TMRRTVKS P+SIWYGPDRPKYLGPFSEQ PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGC FPE+L KNGVKFGEAVWFKAG+QIF+EGGLDYLGNPNLIHAQSILAIWA QVVLMGFVEGYR Sbjct: 1 MATSAIQQSAFTGKTGLRQGNEFIRKRGNFGQARFTMRRTVKSAPESIWYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYR 175 HSP 2 Score: 75.485 bits (184), Expect = 3.144e-103 Identity = 37/45 (82.22%), Postives = 38/45 (84.44%), Query Frame = 3 Query: 552 LVKDLTHFXPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMF 686 L + L PGGAFDPLGLADDPD FAELKVKELKNGRLAMFSMF Sbjct: 181 LGEGLDPLYPGGAFDPLGLADDPDSFAELKVKELKNGRLAMFSMF 225
BLAST of CF417507 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1) HSP 1 Score: 322.398 bits (825), Expect = 1.189e-102 Identity = 154/175 (88.00%), Postives = 165/175 (94.29%), Query Frame = 1 Query: 10 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSTPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 534 MA SAIQ SAFAGQTAL+Q +E VRKVGV+DG R +MRRTVK+ PQSIWYG DRPK+LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGC+FPE+LSKNGV+FGEAVWFKAGAQIFSEGGLDYLGNPNL+HAQSILAIWA QVVLMG +EGYR Sbjct: 1 MAASAIQSSAFAGQTALKQRDELVRKVGVSDG-RFSMRRTVKAVPQSIWYGADRPKFLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLSKNGVQFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVVLMGLIEGYR 174 HSP 2 Score: 72.7886 bits (177), Expect = 1.189e-102 Identity = 35/45 (77.78%), Postives = 38/45 (84.44%), Query Frame = 3 Query: 552 LVKDLTHFXPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMF 686 L + L PGGAFDPLGLADDP+ FAELKVKE+KNGRLAMFSMF Sbjct: 180 LGEGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMF 224
BLAST of CF417507 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1) HSP 1 Score: 308.916 bits (790), Expect = 2.658e-99 Identity = 153/175 (87.43%), Postives = 161/175 (92.00%), Query Frame = 1 Query: 10 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSTPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 534 MA SA+ Q+ TA R+ +E VR+VG + GGRITMRRTVKS PQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNL+HAQSILAIWA QVVLMGFVEGYR Sbjct: 1 MAASALHQTTSFLGTAPRR-DELVRRVGDS-GGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYR 173 HSP 2 Score: 75.0998 bits (183), Expect = 2.658e-99 Identity = 37/45 (82.22%), Postives = 38/45 (84.44%), Query Frame = 3 Query: 552 LVKDLTHFXPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMF 686 L + L PGGAFDPLGLADDPD FAELKVKELKNGRLAMFSMF Sbjct: 179 LGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMF 223
BLAST of CF417507 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1) HSP 1 Score: 308.916 bits (790), Expect = 2.658e-99 Identity = 153/175 (87.43%), Postives = 161/175 (92.00%), Query Frame = 1 Query: 10 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSTPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 534 MA SA+ Q+ TA R+ +E VR+VG + GGRITMRRTVKS PQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNL+HAQSILAIWA QVVLMGFVEGYR Sbjct: 1 MAASALHQTTSFLGTAPRR-DELVRRVGDS-GGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYR 173 HSP 2 Score: 75.0998 bits (183), Expect = 2.658e-99 Identity = 37/45 (82.22%), Postives = 38/45 (84.44%), Query Frame = 3 Query: 552 LVKDLTHFXPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMF 686 L + L PGGAFDPLGLADDPD FAELKVKELKNGRLAMFSMF Sbjct: 179 LGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMF 223
BLAST of CF417507 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1) HSP 1 Score: 307.375 bits (786), Expect = 3.186e-97 Identity = 151/177 (85.31%), Postives = 160/177 (90.40%), Query Frame = 1 Query: 10 MAT-SAIQQSAFAGQTALR-QSNEFVRKVGVADGGRITMRRTVKSTPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 534 MAT SAIQ S+ AGQT LR Q NE V+KVG A RITMRRTV+S P+SIWYGPDRPKYLGPFSE TPSYLTGEFPGDYGWDTA +SADPETFAKNRELEVIH RWAMLGALGCVFPE+L+KNG+KFGEAVWFKAGAQIFSEGGLDY GNPNLIHAQSILAIWACQVVLMG +EGYR Sbjct: 1 MATASAIQSSSLAGQTLLRPQQNELVKKVGTAQA-RITMRRTVRSAPESIWYGPDRPKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGLKFGEAVWFKAGAQIFSEGGLDYAGNPNLIHAQSILAIWACQVVLMGLIEGYR 176 HSP 2 Score: 69.707 bits (169), Expect = 3.186e-97 Identity = 34/45 (75.56%), Postives = 37/45 (82.22%), Query Frame = 3 Query: 552 LVKDLTHFXPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMF 686 L + L PGGAFDPLGLADDP+ AELKVKE+KNGRLAMFSMF Sbjct: 182 LGEGLDPLLPGGAFDPLGLADDPEACAELKVKEIKNGRLAMFSMF 226
BLAST of CF417507 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1) HSP 1 Score: 290.426 bits (742), Expect = 3.509e-93 Identity = 136/145 (93.79%), Postives = 140/145 (96.55%), Query Frame = 1 Query: 100 DGGRITMRRTVKSTPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 534 +GGR+TMRRTVKS PQSIWYG DRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPEILSKNGV FGEAVWFKAG+QIFSEGGLDYLGNPNLIHAQSILAIWA QVVLMGFVEGYR Sbjct: 3 EGGRVTMRRTVKSAPQSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGFVEGYR 147 HSP 2 Score: 73.1738 bits (178), Expect = 3.509e-93 Identity = 35/45 (77.78%), Postives = 38/45 (84.44%), Query Frame = 3 Query: 552 LVKDLTHFXPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMF 686 L + L PGGAFDPLGLADDP+ FAELKVKE+KNGRLAMFSMF Sbjct: 153 LGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMF 197 The following BLAST results are available for this feature:
BLAST of CF417507 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 78
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417507 ID=CF417507; Name=CF417507; organism=Citrus sinensis; type=EST; length=687bpback to top |