CF417509

Overview
NameCF417509
Unique NameCF417509
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length628
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417509 vs. ExPASy Swiss-Prot
Match: CJ058_RAT (Uncharacterized protein C10orf58 homolog OS=Rattus norvegicus PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.288e-13
Identity = 39/89 (43.82%), Postives = 53/89 (59.55%), Query Frame = 2
Query:  191 QKLTPEYKIGMERLVKTKTP-PMKALELWRERPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRLFG 454
            QK   EY   ++     K P   KA ELW +  AV++ +RRPGC +CRAEA  L + KP  D LG+ L+AV+ E ++ EV+DF P   G
Sbjct:   42 QKAALEYLEDIDLKTLEKEPRTFKAKELWEKNGAVIMAVRRPGCFLCRAEAADLMSLKPKLDELGVPLYAVVKEKVKREVEDFQPYFKG 130          
BLAST of CF417509 vs. ExPASy Swiss-Prot
Match: CJ058_HUMAN (Uncharacterized protein C10orf58 OS=Homo sapiens GN=C10orf58 PE=1 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 3.288e-13
Identity = 39/89 (43.82%), Postives = 53/89 (59.55%), Query Frame = 2
Query:  191 QKLTPEYKIGMERLVKTKTP-PMKALELWRERPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRLFG 454
            QK   EY   ++     K P   KA ELW +  AV++ +RRPGC +CR EA  L + K + D LG+ L+AV+ E+I +EVKDF P   G
Sbjct:   42 QKAALEYLEDIDLKTLEKEPRTFKAKELWEKNGAVIMAVRRPGCFLCREEAADLSSLKSMLDQLGVPLYAVVKEHIRTEVKDFQPYFKG 130          
BLAST of CF417509 vs. ExPASy Swiss-Prot
Match: CJ058_MOUSE (Uncharacterized protein C10orf58 homolog OS=Mus musculus PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 7.325e-13
Identity = 38/89 (42.70%), Postives = 53/89 (59.55%), Query Frame = 2
Query:  191 QKLTPEYKIGMERLVKTKTP-PMKALELWRERPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRLFG 454
            +K   EY   ++     K P   KA ELW +  AV++ +RRPGC +CRAEA  L + KP  D LG+ L+AV+ E ++ EV+DF P   G
Sbjct:   31 RKAALEYLEDIDLKTLEKEPRTFKAKELWEKNGAVIMAVRRPGCFLCRAEAADLMSLKPKLDELGVPLYAVVKEQVKREVEDFQPYFKG 119          
BLAST of CF417509 vs. ExPASy Swiss-Prot
Match: CJ058_BOVIN (Uncharacterized protein C10orf58 homolog OS=Bos taurus PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.131e-12
Identity = 33/66 (50.00%), Postives = 45/66 (68.18%), Query Frame = 2
Query:  257 KALELWRERPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRLFG 454
            KA  LW +  AV++ +RRPGC +CR EA  L + KP  D LG+ L+AV+ E+I++EVKDF P   G
Sbjct:   54 KAKALWEKNGAVIMAVRRPGCFLCREEATDLSSLKPKLDELGVPLYAVVKEHIKNEVKDFQPYFKG 119          
The following BLAST results are available for this feature:
BLAST of CF417509 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
CJ058_RAT3.288e-1343.82Uncharacterized protein C10orf58 homolog OS=Rattus... [more]
CJ058_HUMAN3.288e-1343.82Uncharacterized protein C10orf58 OS=Homo sapiens G... [more]
CJ058_MOUSE7.325e-1342.70Uncharacterized protein C10orf58 homolog OS=Mus mu... [more]
CJ058_BOVIN2.131e-1250.00Uncharacterized protein C10orf58 homolog OS=Bos ta... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-439 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-006_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417509 ID=CF417509; Name=CF417509; organism=Citrus sinensis; type=EST; length=628bp
ATCCCTGTCAAGAACCGGTGCAAATAAATCCCTAGAACAATCACTGGCTG
ATTTTAAGATCAAAGATGGATACACCTTCAAAGGAATTGTAGCTGCGGGA
CCAGCTGTGCCCCGAGTATGTGGTTGCATACAAGCTCCTCCAGTCAATGA
AAAGGTTGCTCCTTACTCTGCCATTGAGAACATCTCAATTCAGAAACTAA
CCCCTGAGTACAAGATCGGAATGGAGCGTTTGGTGAAAACAAAGACACCT
CCAATGAAGGCTTTAGAGTTGTGGCGAGAAAGGCCAGCTGTCCTCCTCTG
CATTCGCCGTCCTGGGTGCATCATGTGCAGAGCAGAAGCTCACCAGTTGT
ACGCAAAAAAACCAATATTTGATGCCTTGGGAATTCAACTATTTGCTGTT
CTTCACGAATACATAGAATCAGAGGTGAAAGATTTCTGGCCACGATTATT
TGGGGGTGGGTGTTGTAGTCTATGACCAGGGTATGGAATTCTTTAAAGCT
CTCGGGGGGTGGAAAGTTGCTCAAGGACAAGTTCCTATCAGGATTTCTTC
TAAACCCCCGAGCTATTGCAAACTATAAGCGTGCAAGAACCCTGGGAGTA
GAGCAAAACTTTAAAGGTGAAGGTGAAT
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