CF417516

Overview
NameCF417516
Unique NameCF417516
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length670
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6996 contig Csv1_Contig6996:153..822. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF417516 vs. ExPASy Swiss-Prot
Match: PSBY_ARATH (Photosystem II core complex proteins psbY, chloroplastic OS=Arabidopsis thaliana GN=PSBY PE=2 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 1.331e-17
Identity = 26/29 (89.66%), Postives = 28/29 (96.55%), Query Frame = 1 
Query:  535 DSRGQLLLIXVTPAILWVLYNILQPALNK 621
            DSRGQLLLI VTPA+LWVLYNILQPALN+
Sbjct:  153 DSRGQLLLIVVTPALLWVLYNILQPALNQ 181

HSP 2 Score: 54.299 bits (129), Expect = 1.331e-17
Identity = 35/97 (36.08%), Postives = 46/97 (47.42%), Query Frame = 3 
Query:  153 MQNLPKGLTVSSKPT----DSSSLAAGTAIAGAIFSTLSSCDXXXXXXXXXXXXXG----DNRGXXXXXXXXXXXXWVLFNILQPALNQINRMRSTK 419
            +QN  K     S PT    + S     TA+AGA+FS+LS  +                  DNRG            WVL+NILQPA+NQ+N+MR +K
Sbjct:   21 LQNQTKSKPFISLPTPPKPNVSLAVTSTALAGAVFSSLSYSEPALAIQQIAQLAAANASSDNRGLALLLPIVPAIAWVLYNILQPAINQVNKMRESK 117
[Close]
BLAST of CF417516 vs. ExPASy Swiss-Prot
Match: PSBY_SPIOL (Photosystem II core complex proteins psbY, chloroplastic OS=Spinacia oleracea GN=PSBY PE=1 SV=2)

HSP 1 Score: 62.7734 bits (151), Expect = 4.934e-17
Identity = 38/89 (42.70%), Postives = 44/89 (49.44%), Query Frame = 3 
Query:  165 PKGLTVSSKPTDSSSLAAGTAIAGAIFSTLSSCDXXXXXXXXXXXXX----GDNRGXXXXXXXXXXXXWVLFNILQPALNQINRMRSTK 419
            P GL+ S  P   S +    AIAGA+F+TL S D                  DNRG            WVLFNILQPALNQIN+MR+ K
Sbjct:   40 PLGLSNSKLPMGLSPIITAPAIAGAVFATLGSVDPAFAVQQLADIAAEAGTSDNRGLALLLPIIPALGWVLFNILQPALNQINKMRNEK 128

HSP 2 Score: 45.8246 bits (107), Expect = 4.934e-17
Identity = 21/29 (72.41%), Postives = 25/29 (86.21%), Query Frame = 1 
Query:  535 DSRGQLLLIXVTPAILWVLYNILQPALNK 621
            D+RG LLL+ V PAI WVL+NILQPALN+
Sbjct:  164 DNRGTLLLLVVLPAIGWVLFNILQPALNQ 192
The following BLAST results are available for this feature:
BLAST of CF417516 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PSBY_ARATH1.331e-1789.66Photosystem II core complex proteins psbY, chlorop... [more]
PSBY_SPIOL4.934e-1742.70Photosystem II core complex proteins psbY, chlorop... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-446 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-006_B06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417516 ID=CF417516; Name=CF417516; organism=Citrus sinensis; type=EST; length=670bp
AACACCAGGCCTTAACCAAGAATCATCAATCATCAGCATCAATGGCAGCA
GCAATGGCTACAACGGCTGTGCTCAATGCCAAGTGCTTCAGCATCAGCTC
CCCCAAAAGCAGCATCAAGCCTGGAACCACAAAACCCACTTCCCCGCTCT
CCATGCAAAACCTCCCAAAAGGCCTCACCGTCTCGTCAAAACCAACCGAT
TCATCATCACTAGCAGCCGGCACCGCCATTGCCGGAGCAATCTTCTCAAC
TCTGAGCTCATGCGATGCTGCTTTTGCCGCACAACAAATAGCAGAAATAG
CGGAAGGTGACAACCGAGGGTTAGCACTATTGCTCCCAATCATCCCGGCC
ATAGCATGGGTGCTGTTCAACATTCTGCAGCCAGCACTCAACCAAATCAA
CCGCATGCGCAGCACCAAGGGTGTGATCATTGGGCTCGGGCTTNGGTGGG
TTGGCCGCAACAGGGCTGATGTCCATGCCGCCCCATGCATCGGCTGCGGC
CAGTGAAGTTGCCACGATTGCTGAAGCCGCTAGTGACAGCAGGGGTCAGC
TTCTGCTTATTGNTGTTACTCCTGCTATTCTCTGGGTGCTTTACAACATT
TTGCAGCCGGCTCTGAACAAATCAACAGGATGAGGTCCGAGTGACAGATT
GATTCTGTTGGAATAGGTGT
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