CF417519

Overview
NameCF417519
Unique NameCF417519
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length692
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1939 contig Csv1_Contig1939:107..797. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417519 vs. ExPASy Swiss-Prot
Match: PSB3A_ARATH (Proteasome subunit beta type-3-A OS=Arabidopsis thaliana GN=PBC1 PE=1 SV=2)

HSP 1 Score: 338.961 bits (868), Expect = 1.071e-97
Identity = 168/183 (91.80%), Postives = 176/183 (96.17%), Query Frame = 2
Query:   14 MSITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGLG 562
            MSI EYNGSA+VAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDR+FIGLSGLATD QTLYQRLVFRHKLYQLREERDMKPETFASLVSA+LYEKRFGPY CQPVIAGL D+DKPFICTMDSIGAKELAKDFVV+GTA ESLYGACEAM+KPDME +ELFET+SQALLSSVDRDCLSG G
Sbjct:    1 MSIFEYNGSAVVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRVFIGLSGLATDVQTLYQRLVFRHKLYQLREERDMKPETFASLVSAILYEKRFGPYLCQPVIAGLGDDDKPFICTMDSIGAKELAKDFVVSGTASESLYGACEAMYKPDMEAEELFETISQALLSSVDRDCLSGWG 183          

HSP 2 Score: 39.6614 bits (91), Expect = 1.071e-97
Identity = 18/18 (100.00%), Postives = 18/18 (100.00%), Query Frame = 3
Query:  573 YIVTPTEIKERILKGRMD 626
            YIVTPTEIKERILKGRMD
Sbjct:  187 YIVTPTEIKERILKGRMD 204          
BLAST of CF417519 vs. ExPASy Swiss-Prot
Match: PSB3B_ARATH (Proteasome subunit beta type-3-B OS=Arabidopsis thaliana GN=PBC2 PE=1 SV=1)

HSP 1 Score: 335.88 bits (860), Expect = 7.545e-96
Identity = 167/183 (91.26%), Postives = 175/183 (95.63%), Query Frame = 2
Query:   14 MSITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGLG 562
            MSI EYNGSA+VAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHD LFIGLSGLATD QTLYQRLVFRHKLYQLREERDMKPETFASLVSA+LYEKRFGP+ CQPVIAGL D++KPFICTMDSIGAKELAKDFVV+GTA ESLYGACEAMFKPDME +ELFET+SQALLSSVDRDCLSG G
Sbjct:    1 MSIFEYNGSAVVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDHLFIGLSGLATDVQTLYQRLVFRHKLYQLREERDMKPETFASLVSAILYEKRFGPFLCQPVIAGLGDDNKPFICTMDSIGAKELAKDFVVSGTASESLYGACEAMFKPDMEAEELFETISQALLSSVDRDCLSGWG 183          

HSP 2 Score: 36.5798 bits (83), Expect = 7.545e-96
Identity = 15/18 (83.33%), Postives = 17/18 (94.44%), Query Frame = 3
Query:  573 YIVTPTEIKERILKGRMD 626
            Y+VTP E+KERILKGRMD
Sbjct:  187 YVVTPKEVKERILKGRMD 204          
BLAST of CF417519 vs. ExPASy Swiss-Prot
Match: PSB3_PICMA (Proteasome subunit beta type-3 OS=Picea mariana GN=PBC1 PE=2 SV=1)

HSP 1 Score: 334.339 bits (856), Expect = 3.416e-93
Identity = 163/183 (89.07%), Postives = 175/183 (95.63%), Query Frame = 2
Query:   14 MSITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGLG 562
            MSI EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRI KIHD+L++GLSGLATD QTLYQR  FRHKLYQLREER+M+PETFASLVSALLYEKRFGPYFCQPVIAGL ++DKPFICTMDSIGAKELAKDFVVAGTA ESLYGACE+M+KPDMEP+ELFET+SQALLSS+DRDCLSG G
Sbjct:    1 MSIFEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRIFKIHDKLYVGLSGLATDVQTLYQRFAFRHKLYQLREERNMRPETFASLVSALLYEKRFGPYFCQPVIAGLGEDDKPFICTMDSIGAKELAKDFVVAGTAAESLYGACESMYKPDMEPEELFETISQALLSSIDRDCLSGWG 183          

HSP 2 Score: 29.261 bits (64), Expect = 3.416e-93
Identity = 11/18 (61.11%), Postives = 15/18 (83.33%), Query Frame = 3
Query:  573 YIVTPTEIKERILKGRMD 626
            Y+V+P ++ ER LKGRMD
Sbjct:  187 YVVSPNQVIERTLKGRMD 204          
BLAST of CF417519 vs. ExPASy Swiss-Prot
Match: PSB3_ORYSJ (Proteasome subunit beta type-3 OS=Oryza sativa subsp. japonica GN=PBC1 PE=2 SV=1)

HSP 1 Score: 328.561 bits (841), Expect = 3.738e-92
Identity = 159/183 (86.89%), Postives = 176/183 (96.17%), Query Frame = 2
Query:   14 MSITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGLG 562
            MSI EYNGSA+VAMVGKNCFAIASDRRLGVQLQT+ATDFQR+ KIHD+L+IGLSGLATD+QTLYQRLVFRHKLYQLREERDMKP+TFASLVSALLYEKRFGPYFCQPVIAGL ++++PFICTMD IGAKELAKDFVV+GTA ESLYGACE+M+KP+MEP+ELFET+SQAL SSVDRDCLSG G
Sbjct:    1 MSIFEYNGSAVVAMVGKNCFAIASDRRLGVQLQTVATDFQRVFKIHDKLYIGLSGLATDAQTLYQRLVFRHKLYQLREERDMKPQTFASLVSALLYEKRFGPYFCQPVIAGLGEDNEPFICTMDCIGAKELAKDFVVSGTASESLYGACESMYKPNMEPEELFETISQALQSSVDRDCLSGWG 183          

HSP 2 Score: 31.5722 bits (70), Expect = 3.738e-92
Identity = 12/17 (70.59%), Postives = 16/17 (94.12%), Query Frame = 3
Query:  576 IVTPTEIKERILKGRMD 626
            +VTPTE+KE ++KGRMD
Sbjct:  188 LVTPTEVKECVIKGRMD 204          
BLAST of CF417519 vs. ExPASy Swiss-Prot
Match: PSB3_ONCMY (Proteasome subunit beta type-3 OS=Oncorhynchus mykiss GN=psmb3 PE=2 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 3.297e-60
Identity = 110/184 (59.78%), Postives = 147/184 (79.89%), Query Frame = 2
Query:   14 MSITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDED-KPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGLG 562
            MSI  YNG A++AM GK C AIA+DRR GVQ Q + TDFQ+I  + DRL+IGL+GLATD QT+ QRL FR  LY+L+E R +KP+TF S+VS LLYE+RFGPY+ +PVIAGL  +  +PFIC++D IG   + +DFVV+GT  E +YG CE++++PDMEP++LFET+SQA+L++VDRD +SG+G
Sbjct:    1 MSIMSYNGGAVMAMKGKQCVAIAADRRFGVQAQMVTTDFQKIFPMGDRLYIGLAGLATDVQTVSQRLKFRLNLYELKEGRQIKPKTFMSMVSNLLYERRFGPYYIEPVIAGLDPKTFEPFICSLDLIGCPMVTEDFVVSGTCSEQMYGMCESLWEPDMEPEDLFETISQAMLNAVDRDAVSGMG 184          
BLAST of CF417519 vs. ExPASy Swiss-Prot
Match: PSB3_SCHPO (Probable proteasome subunit beta type-3 OS=Schizosaccharomyces pombe GN=SPCC63.12c PE=2 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.636e-59
Identity = 106/183 (57.92%), Postives = 146/183 (79.78%), Query Frame = 2
Query:   14 MSITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGLG 562
            MSI EYNG + VAM GKNC AIASD RLGVQ  ++  +F ++  + D+ ++GL+GLATD QTLY+   ++  LY+ REER ++P+TFA+LVS+ LYEKRFGPYF  PV+AG+S+++ PFIC  DSIG  + A+DF+V+GTA E LYG CE++++P++EPD+LFET+SQALL++ DRDC+SG G
Sbjct:    1 MSIMEYNGGSCVAMAGKNCVAIASDLRLGVQSISLTNNFPKVFAMGDKTYLGLTGLATDVQTLYELFRYKVNLYKFREERQIQPKTFANLVSSTLYEKRFGPYFSFPVVAGVSNDNTPFICGFDSIGCIDFAEDFIVSGTATEQLYGMCESVYEPNLEPDDLFETISQALLNAQDRDCISGWG 183          
BLAST of CF417519 vs. ExPASy Swiss-Prot
Match: PSB3_HUMAN (Proteasome subunit beta type-3 OS=Homo sapiens GN=PSMB3 PE=1 SV=2)

HSP 1 Score: 228.409 bits (581), Expect = 2.791e-59
Identity = 109/184 (59.24%), Postives = 144/184 (78.26%), Query Frame = 2
Query:   14 MSITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDED-KPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGLG 562
            MSI  YNG A++AM GKNC AIA+DRR G+Q Q + TDFQ+I  + DRL+IGL+GLATD QT+ QRL FR  LY+L+E R +KP T  S+V+ LLYEKRFGPY+ +PVIAGL  +  KPFIC++D IG   +  DFVV+GT  E +YG CE++++P+M+PD LFET+SQA+L++VDRD +SG+G
Sbjct:    1 MSIMSYNGGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDPDHLFETISQAMLNAVDRDAVSGMG 184          
BLAST of CF417519 vs. ExPASy Swiss-Prot
Match: PSB3_MOUSE (Proteasome subunit beta type-3 OS=Mus musculus GN=Psmb3 PE=1 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 8.121e-59
Identity = 108/184 (58.70%), Postives = 144/184 (78.26%), Query Frame = 2
Query:   14 MSITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDED-KPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGLG 562
            MSI  YNG A++AM GKNC AIA+DRR G+Q Q + TDFQ+I  + DRL+IGL+GLATD QT+ QRL FR  LY+L+E R +KP T  S+V+ LLYEKRFGPY+ +PVIAGL  +  KPFIC++D IG   +  DFVV+GT  E +YG CE++++P+M+P+ LFET+SQA+L++VDRD +SG+G
Sbjct:    1 MSIMSYNGGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCSEQMYGMCESLWEPNMDPEHLFETISQAMLNAVDRDAVSGMG 184          
BLAST of CF417519 vs. ExPASy Swiss-Prot
Match: PSB3_RAT (Proteasome subunit beta type-3 OS=Rattus norvegicus GN=Psmb3 PE=1 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.061e-58
Identity = 107/184 (58.15%), Postives = 144/184 (78.26%), Query Frame = 2
Query:   14 MSITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDED-KPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGLG 562
            MS+  YNG A++AM GKNC AIA+DRR G+Q Q + TDFQ+I  + DRL+IGL+GLATD QT+ QRL FR  LY+L+E R +KP T  S+V+ LLYEKRFGPY+ +PVIAGL  +  KPFIC++D IG   +  DFVV+GT  E +YG CE++++P+M+P+ LFET+SQA+L++VDRD +SG+G
Sbjct:    1 MSVMSYNGGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCSEQMYGMCESLWEPNMDPEHLFETISQAMLNAVDRDAVSGMG 184          
BLAST of CF417519 vs. ExPASy Swiss-Prot
Match: PSB3_DICDI (Proteasome subunit beta type-3 OS=Dictyostelium discoideum GN=psmB3 PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.385e-58
Identity = 107/184 (58.15%), Postives = 137/184 (74.46%), Query Frame = 2
Query:   14 MSITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDK-PFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGLG 562
            MSI  YNG A + MVGKNC AIASD R G+Q QTI+ DF ++ +I+D+ F+G+SGL TD+QTLYQ+LVFRH LY+LREERDM P   ++L++ +LYEKRFGPYF +P+I GL   D  PFI  MD IGA     DF+V GT   ++YG CE ++K DM  D+LFET+SQ +L+S+DRD LSG G
Sbjct:    1 MSIMAYNGGACIVMVGKNCVAIASDLRFGIQQQTISNDFPKVYRINDKCFVGISGLVTDAQTLYQKLVFRHNLYKLREERDMSPRVVSNLLTNMLYEKRFGPYFTEPLICGLEGPDNTPFISGMDLIGASVATDDFLVVGTMTPAMYGVCETLYKKDMNEDDLFETISQCMLASLDRDALSGWG 184          
The following BLAST results are available for this feature:
BLAST of CF417519 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
PSB3A_ARATH1.071e-9791.80Proteasome subunit beta type-3-A OS=Arabidopsis th... [more]
PSB3B_ARATH7.545e-9691.26Proteasome subunit beta type-3-B OS=Arabidopsis th... [more]
PSB3_PICMA3.416e-9389.07Proteasome subunit beta type-3 OS=Picea mariana GN... [more]
PSB3_ORYSJ3.738e-9286.89Proteasome subunit beta type-3 OS=Oryza sativa sub... [more]
PSB3_ONCMY3.297e-6059.78Proteasome subunit beta type-3 OS=Oncorhynchus myk... [more]
PSB3_SCHPO1.636e-5957.92Probable proteasome subunit beta type-3 OS=Schizos... [more]
PSB3_HUMAN2.791e-5959.24Proteasome subunit beta type-3 OS=Homo sapiens GN=... [more]
PSB3_MOUSE8.121e-5958.70Proteasome subunit beta type-3 OS=Mus musculus GN=... [more]
PSB3_RAT1.061e-5858.15Proteasome subunit beta type-3 OS=Rattus norvegicu... [more]
PSB3_DICDI1.385e-5858.15Proteasome subunit beta type-3 OS=Dictyostelium di... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-449 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-006_B09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417519 ID=CF417519; Name=CF417519; organism=Citrus sinensis; type=EST; length=692bp
TACAATTATAATTATGTCTATCACTGAGTACAATGGGAGCGCACTCGTTG
CGATGGTCGGAAAGAACTGCTTTGCCATTGCCAGCGATCGGCGCCTCGGC
GTTCAGCTTCAGACAATAGCCACTGATTTTCAGCGAATTTCCAAAATTCA
CGATCGCCTTTTTATCGGCCTCTCTGGACTCGCCACTGATTCCCAGACCT
TGTATCAAAGGCTGGTGTTTCGTCACAAATTGTATCAGCTGCGAGAGGAA
AGGGACATGAAGCCTGAAACTTTTGCTAGCTTAGTCTCTGCTTTGCTTTA
TGAGAAAAGGTTTGGCCCTTACTTCTGTCAACCTGTTATTGCTGGATTGA
GTGATGAAGACAAGCCCTTTATCTGCACAATGGACTCAATTGGAGCCAAG
GAGCTTGCAAAAGATTTTGTTGTTGCTGGAACTGCTGGAGAGTCTCTTTA
TGGTGCCTGTGAGGCAATGTTCAAGCCTGATATGGAACCCGATGAGTTGT
TTGAAACTGTATCTCAAGCTTTGTTATCATCTGTTGACCGTGACTGTTTG
AGTGGGTTGGGGAGGACATGTCTACATTGTAACACCAACTGAAATAAAGG
AAAGAATCTTGAAGGGAAGGATGGATTGATCTATAACTGCAGTGCTGAAA
GCCACCCCTTCTGTTGCGTTCACTCTTCAGTATTTTTTAATT
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