CF417521

Overview
NameCF417521
Unique NameCF417521
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length621
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF417521_ssr225 microsatellite CF417521_ssr225:225..239. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9675 contig Csv1_Contig9675:33..651. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417521 vs. ExPASy Swiss-Prot
Match: ELI_PEA (Early light-induced protein, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.410e-41
Identity = 89/149 (59.73%), Postives = 107/149 (71.81%), Query Frame = 2
Query:  134 RSGANQLSSVK--YLPSLRRNVNLSVRCTAXXXXXXXXXXXX-PTIPKAE---PQPP--KKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSD 556
            RS  NQ +++   Y+P+LRRNV+L VR  A             PT P A    PQP   + P+MST FS++ AFSGPAPERINGRLAMIGFVAA+GVEI+KGQ +  QLS GGVAWFLGTSVLL++ASL+P F+GVSVESKS   M+SD
Sbjct:   20 RSRVNQFTNIPSVYIPTLRRNVSLKVRSMAEGEPKEQSKVAVDPTTPTASTPTPQPAYTRPPKMSTKFSDLMAFSGPAPERINGRLAMIGFVAAMGVEIAKGQGLSEQLSGGGVAWFLGTSVLLSLASLIPFFQGVSVESKSKSIMSSD 168          

HSP 2 Score: 32.3426 bits (72), Expect = 1.410e-41
Identity = 15/16 (93.75%), Postives = 15/16 (93.75%), Query Frame = 1
Query:  574 GRFAMLGLVALAFTEF 621
            GR AMLGLVALAFTEF
Sbjct:  174 GRIAMLGLVALAFTEF 189          
BLAST of CF417521 vs. ExPASy Swiss-Prot
Match: DS22_CRAPL (Desiccation stress protein DSP-22, chloroplastic OS=Craterostigma plantagineum GN=DSP-22 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.171e-26
Identity = 68/170 (40.00%), Postives = 99/170 (58.24%), Query Frame = 2
Query:   65 MAASLATQSMLASPVAARVTGIRRSGANQLSSVKY---LPSLRRNVNLSVRCTAXXXXXXXXXXXXP--TIPKAEPQPPKKPRMSTGFS-EVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSD 556
            MA+S    ++ A     + T I R G N L   K    LP +RRN   +VR                  T        P +  ++T  + ++F+F G APERINGR AMIGFVAA+GVE++ G+DVF+Q+ +GGV WFL TS +L +A+L+P+++G+S E+K++GF  SD
Sbjct:    1 MASSTCYATIPAMSCRGQST-ITRFGPNNLFLGKQSYELPLMRRNAKFTVRSMREDNEKEEQQQQKQQQTHDGGPDLTPNRTEVTTKRTVDLFSFDGLAPERINGRSAMIGFVAAVGVELATGRDVFSQVFNGGVMWFLLTSAVLVLATLIPIYRGLSPEAKNNGFWNSD 169          

HSP 2 Score: 32.7278 bits (73), Expect = 1.171e-26
Identity = 14/16 (87.50%), Postives = 16/16 (100.00%), Query Frame = 1
Query:  574 GRFAMLGLVALAFTEF 621
            GRFAM+GLVALAFTE+
Sbjct:  175 GRFAMIGLVALAFTEY 190          
BLAST of CF417521 vs. ExPASy Swiss-Prot
Match: ELI5_HORVU (High molecular mass early light-inducible protein HV58, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.104e-23
Identity = 53/103 (51.46%), Postives = 70/103 (67.96%), Query Frame = 2
Query:  254 PTIPKAEPQPPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLS--DGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSD 556
            PT   A P+P  K + +    +  AFSGPAPERINGRLAM+GFVAAL VE ++G  +  Q+     G+AWFL T+ + +VASL+PL +G SVESKS G  ++D
Sbjct:  100 PTTIPAAPKPVTK-KANPSVWDALAFSGPAPERINGRLAMVGFVAALSVEAARGGGLLDQVGMWSSGLAWFLATAGVFSVASLLPLLQGQSVESKSSGIWSAD 201          

HSP 2 Score: 31.5722 bits (70), Expect = 1.104e-23
Identity = 15/16 (93.75%), Postives = 15/16 (93.75%), Query Frame = 1
Query:  574 GRFAMLGLVALAFTEF 621
            GRFAMLGLVALA TEF
Sbjct:  207 GRFAMLGLVALAATEF 222          
BLAST of CF417521 vs. ExPASy Swiss-Prot
Match: ELI9_HORVU (Low molecular mass early light-inducible protein HV90, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.453e-23
Identity = 66/161 (40.99%), Postives = 89/161 (55.28%), Query Frame = 2
Query:   77 LATQSMLASPVAARVTGIRRSGANQLSSVKYLPSLRRNVNLSVRCTAXXXXXXXXXXXXPTIPKAEPQPPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDG-GVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSD 556
            +AT   ++S   A V  + RS A+   + + LP+L R   L VR               P+ P     PP KP+ ST   +  AFSGPAPERINGRLAM+GFV AL VE  +G  + +QL  G G AWF  T  +L++ASLVPL +G S E ++   M ++
Sbjct:    1 MATMMSMSSFAGAAV--VPRSSASSFGA-RSLPALGRRA-LVVRAQTEG----------PSAP-----PPNKPKASTSIWDEMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAVLSMASLVPLLQGESAEGRAGAIMNAN 142          

HSP 2 Score: 29.261 bits (64), Expect = 2.453e-23
Identity = 14/15 (93.33%), Postives = 14/15 (93.33%), Query Frame = 1
Query:  574 GRFAMLGLVALAFTE 618
            GRFAMLGLVALA TE
Sbjct:  148 GRFAMLGLVALAATE 162          
BLAST of CF417521 vs. ExPASy Swiss-Prot
Match: ELI6_HORVU (Low molecular mass early light-inducible protein HV60, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 3.197e-23
Identity = 49/93 (52.69%), Postives = 63/93 (67.74%), Query Frame = 2
Query:  281 PPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDG-GVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSD 556
            PP KP+ ST   +  AFSGPAPERINGRLAM+GFV AL VE  +G  + +QL  G G AWF  T  +L++ASLVPL +G S E ++   M ++
Sbjct:   45 PPNKPKASTSIWDAMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAMLSMASLVPLLQGESAEGRAGAIMNAN 137          

HSP 2 Score: 28.4906 bits (62), Expect = 3.197e-23
Identity = 13/15 (86.67%), Postives = 14/15 (93.33%), Query Frame = 1
Query:  574 GRFAMLGLVALAFTE 618
            GRFAM+GLVALA TE
Sbjct:  143 GRFAMIGLVALAATE 157          
BLAST of CF417521 vs. ExPASy Swiss-Prot
Match: CBR_DUNBA (Carotene biosynthesis-related protein CBR, chloroplastic OS=Dunaliella bardawil GN=CBR PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.167e-12
Identity = 44/86 (51.16%), Postives = 51/86 (59.30%), Query Frame = 2
Query:  257 TIPKAEPQPPKKPRMSTG--FSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLF 508
            T P + P PP  P        +EV  FSG APE INGRLAM+GFVAALG E+S G+ V  QL D      L T VL + ASL+P F
Sbjct:   47 TPPPSSPSPPPPPPTPAAPTVTEVMGFSG-APEIINGRLAMLGFVAALGAELSTGESVLTQLGDQPTLIAL-TFVLFSAASLIPAF 130          

HSP 2 Score: 20.4014 bits (41), Expect = 2.167e-12
Identity = 8/15 (53.33%), Postives = 10/15 (66.67%), Query Frame = 1
Query:  574 GRFAMLGLVALAFTE 618
            GRFAM+G  A+   E
Sbjct:  150 GRFAMIGFAAMLVYE 164          
The following BLAST results are available for this feature:
BLAST of CF417521 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
ELI_PEA1.410e-4159.73Early light-induced protein, chloroplastic OS=Pisu... [more]
DS22_CRAPL1.171e-2640.00Desiccation stress protein DSP-22, chloroplastic O... [more]
ELI5_HORVU1.104e-2351.46High molecular mass early light-inducible protein ... [more]
ELI9_HORVU2.453e-2340.99Low molecular mass early light-inducible protein H... [more]
ELI6_HORVU3.197e-2352.69Low molecular mass early light-inducible protein H... [more]
CBR_DUNBA2.167e-1251.16Carotene biosynthesis-related protein CBR, chlorop... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-451 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-006_B11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417521 ID=CF417521; Name=CF417521; organism=Citrus sinensis; type=EST; length=621bp
GCCGACCTGAAGCACCCAATTCCCGAATTATACTTTGTTCTGTTTTCTAC
TTCATAAATTAAAAATGGCCGCATCACTTGCTACTCAATCTATGCTGGCA
AGTCCTGTAGCAGCTCGTGTGACTGGTATCAGGAGATCCGGGGCAAACCA
ACTTTCCTCCGTCAAGTACTTGCCTAGTCTGCGTAGAAATGTCAACTTAT
CCGTGCGCTGCACGGCAGAGGATGAGCAGCAGCAGCAGCAGAAAGATGAT
CAACCAACCATACCGAAAGCTGAGCCTCAGCCACCAAAGAAGCCGCGGAT
GAGCACGGGGTTCTCTGAGGTGTTTGCGTTCAGCGGGCCGGCACCGGAGA
GGATAAACGGGAGGCTTGCGATGATTGGGTTCGTGGCTGCATTGGGGGTG
GAGATATCCAAGGGTCAGGATGTGTTTGCCCAGTTATCAGACGGTGGGGT
TGCCTGGTTCTTGGGGACCAGTGTTTTGCTCACGGTTGCGTCCCTGGTTC
CTTTGTTTAAAGGTGTCAGCGTGGAGTCTAAATCGGATGGGTTCATGACT
TCGGATGCTGAGTTGTGGGAANTGGGAGGTTTGCTATGCTGGGCCTTGTT
GCTTTGGCTTTCACCGAGTTT
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