CF417522

Overview
NameCF417522
Unique NameCF417522
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length727
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10591 contig Csv1_Contig10591:225..951. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417522 vs. ExPASy Swiss-Prot
Match: ATPG_TOBAC (ATP synthase gamma chain, chloroplastic OS=Nicotiana tabacum GN=ATPC PE=1 SV=1)

HSP 1 Score: 360.147 bits (923), Expect = 6.696e-99
Identity = 182/203 (89.66%), Postives = 195/203 (96.06%), Query Frame = 1
Query:    1 KKGNAYFLRRPYIPVDRFLEGGSLPTAKEAQTIADDVFSLFVSEEVDKVELLYTKFVSLVKSDPVIHTLLPLSPRGEICDVNGVCVDAAEDEFFRLTTKEGKLTVERDVVRTETASFSPILQFEQDPVQILDALLPLYLNSQILRALQESLASELASRMSAMSNATDNAMELKKNLSIVYNRQRQAKITGEILEIVAGADALV 609
            KKGN+YF+RRPYIPVD+FLEG +LPTAK+AQ IADDVFSLFVSEEVDKVELLYTKFVSLVKS+PVIHTLLPLSP+GEICD+NG CVDAA DEFFRLTTKEGKLTVERD++RT+T  FSPILQFEQDPVQILDALLPLYLNSQILRALQESLASELA+RMSAMS+ATDNA ELKKNLS VYNRQRQAKITGEILEIVAGADALV
Sbjct:  175 KKGNSYFIRRPYIPVDKFLEGSNLPTAKDAQAIADDVFSLFVSEEVDKVELLYTKFVSLVKSEPVIHTLLPLSPKGEICDINGNCVDAANDEFFRLTTKEGKLTVERDIIRTKTTDFSPILQFEQDPVQILDALLPLYLNSQILRALQESLASELAARMSAMSSATDNATELKKNLSRVYNRQRQAKITGEILEIVAGADALV 377          
BLAST of CF417522 vs. ExPASy Swiss-Prot
Match: ATPG1_ARATH (ATP synthase gamma chain 1, chloroplastic OS=Arabidopsis thaliana GN=ATPC1 PE=1 SV=1)

HSP 1 Score: 350.903 bits (899), Expect = 4.063e-96
Identity = 176/203 (86.70%), Postives = 194/203 (95.57%), Query Frame = 1
Query:    1 KKGNAYFLRRPYIPVDRFLEGGSLPTAKEAQTIADDVFSLFVSEEVDKVELLYTKFVSLVKSDPVIHTLLPLSPRGEICDVNGVCVDAAEDEFFRLTTKEGKLTVERDVVRTETASFSPILQFEQDPVQILDALLPLYLNSQILRALQESLASELASRMSAMSNATDNAMELKKNLSIVYNRQRQAKITGEILEIVAGADALV 609
            KKGN+YFLRRPYIPVD++LE G+LPTAKEAQ +ADDVFSLF+SEEVDKVELLYTKFVSLVKS+PVIHTLLPLSP+GEICD+NG CVDAAEDEFFRLTTKEGKLTVER+  RT TA FSPILQFEQDPVQILDALLPLYLNSQILRALQESLASELA+RMSAMS+A+DNA +LKK+LS+VYNR+RQAKITGEILEIVAGA+A V
Sbjct:  171 KKGNSYFLRRPYIPVDKYLEAGTLPTAKEAQAVADDVFSLFISEEVDKVELLYTKFVSLVKSEPVIHTLLPLSPKGEICDINGTCVDAAEDEFFRLTTKEGKLTVERETFRTPTADFSPILQFEQDPVQILDALLPLYLNSQILRALQESLASELAARMSAMSSASDNASDLKKSLSMVYNRKRQAKITGEILEIVAGANAQV 373          
BLAST of CF417522 vs. ExPASy Swiss-Prot
Match: ATPG_SPIOL (ATP synthase gamma chain, chloroplastic OS=Spinacia oleracea GN=ATPC PE=1 SV=2)

HSP 1 Score: 343.584 bits (880), Expect = 6.486e-94
Identity = 174/203 (85.71%), Postives = 189/203 (93.10%), Query Frame = 1
Query:    1 KKGNAYFLRRPYIPVDRFLEGGSLPTAKEAQTIADDVFSLFVSEEVDKVELLYTKFVSLVKSDPVIHTLLPLSPRGEICDVNGVCVDAAEDEFFRLTTKEGKLTVERDVVRTETASFSPILQFEQDPVQILDALLPLYLNSQILRALQESLASELASRMSAMSNATDNAMELKKNLSIVYNRQRQAKITGEILEIVAGADALV 609
            KKGN YF+RRP IPVDR+ +G +LPTAKEAQ IADDVFSLFVSEEVDKVE+LYTKFVSLVKSDPVIHTLLPLSP+GEICD+NG CVDAAEDE FRLTTKEGKLTVERD+++TET +FSPIL+FEQDP QILDALLPLYLNSQILRALQESLASELA+RM+AMSNATDNA ELKK LSI YNR RQAKITGEILEIVAGA+A V
Sbjct:  162 KKGNTYFIRRPEIPVDRYFDGTNLPTAKEAQAIADDVFSLFVSEEVDKVEMLYTKFVSLVKSDPVIHTLLPLSPKGEICDINGKCVDAAEDELFRLTTKEGKLTVERDMIKTETPAFSPILEFEQDPAQILDALLPLYLNSQILRALQESLASELAARMTAMSNATDNANELKKTLSINYNRARQAKITGEILEIVAGANACV 364          
BLAST of CF417522 vs. ExPASy Swiss-Prot
Match: ATPG_PEA (ATP synthase gamma chain, chloroplastic OS=Pisum sativum GN=ATPC PE=2 SV=1)

HSP 1 Score: 339.347 bits (869), Expect = 1.223e-92
Identity = 173/198 (87.37%), Postives = 186/198 (93.94%), Query Frame = 1
Query:    1 KKGNAYFLRRPYIPVDRFLEGGSLPTAKEAQTIADDVFSLFVSEEVDKVELLYTKFVSLVKSDPVIHTLLPLSPRGEICDVNGVCVDAAEDEFFRLTTKEGKLTVERDVVRTETASFSPILQFEQDPVQILDALLPLYLNSQILRALQESLASELASRMSAMSNATDNAMELKKNLSIVYNRQRQAKITGEILEIVAG 594
            +KGN+YF RRPYIPVDRFLEGGSLPTAKEAQTIADDVFSLFVSEEVDKVELLYTKFVSLVKS+P+IHTLLPLSP+GEICD+NG CVDAAEDE FRLTTKEGKLTVERDV+R++T  FSPILQFEQDPVQILDALLPLYLNSQILR LQESLASELA+RMSAMS+A DNA ELK +L+ VYNR  QAKITGEILEIVAG
Sbjct:  172 RKGNSYFNRRPYIPVDRFLEGGSLPTAKEAQTIADDVFSLFVSEEVDKVELLYTKFVSLVKSNPIIHTLLPLSPKGEICDINGNCVDAAEDELFRLTTKEGKLTVERDVIRSKTVDFSPILQFEQDPVQILDALLPLYLNSQILRPLQESLASELAARMSAMSSAFDNASELKTDLTRVYNRATQAKITGEILEIVAG 369          
BLAST of CF417522 vs. ExPASy Swiss-Prot
Match: ATPG_MAIZE (ATP synthase subunit gamma, chloroplastic OS=Zea mays PE=1 SV=1)

HSP 1 Score: 329.717 bits (844), Expect = 9.692e-90
Identity = 167/202 (82.67%), Postives = 186/202 (92.08%), Query Frame = 1
Query:    1 KKGNAYFLRRPYIPVDRFLEGGSLPTAKEAQTIADDVFSLFVSEEVDKVELLYTKFVSLVKSDPVIHTLLPLSPRGEICDVNGVCVDAAEDEFFRLTTKEGKLTVERDVVRTETASFSPILQFEQDPVQILDALLPLYLNSQILRALQESLASELASRMSAMSNATDNAMELKKNLSIVYNRQRQAKITGEILEIVAGADAL 606
            KKGNAYF RRPYIP++R LE  S+PT K++Q I D V+SLFVSEEVDKVELLY+KFVSLV+SDP+I TLLP+SP+GEICDVNGVCVDA EDE FRLTTKEGKLTVER+ V+ ET  FSP++QFEQDPVQILDALLPLYLNSQILRALQESLASELA+RMSAMS+ATDNA+EL+KNLSI YNRQRQAKITGEILEIVAGADAL
Sbjct:  156 KKGNAYFQRRPYIPLERDLEVSSVPTVKDSQAICDLVYSLFVSEEVDKVELLYSKFVSLVRSDPIIQTLLPMSPKGEICDVNGVCVDATEDELFRLTTKEGKLTVEREKVKIETQPFSPVVQFEQDPVQILDALLPLYLNSQILRALQESLASELAARMSAMSSATDNAIELRKNLSIAYNRQRQAKITGEILEIVAGADAL 357          
BLAST of CF417522 vs. ExPASy Swiss-Prot
Match: ATPG2_ARATH (ATP synthase gamma chain 2, chloroplastic OS=Arabidopsis thaliana GN=ATPC2 PE=2 SV=1)

HSP 1 Score: 306.22 bits (783), Expect = 1.148e-82
Identity = 158/203 (77.83%), Postives = 176/203 (86.70%), Query Frame = 1
Query:    1 KKGNAYFLRRPYIPVDRFLEGGSL-PTAKEAQTIADDVFSLFVSEEVDKVELLYTKFVSLVKSDPVIHTLLPLSPRGEICDVNGVCVDAAEDEFFRLTTKEGKLTVERDVVRTETASFSPILQFEQDPVQILDALLPLYLNSQILRALQESLASELASRMSAMSNATDNAMELKKNLSIVYNRQRQAKITGEILEIVAGADAL 606
            KKGNAYF RR    VD+ +EGG + PT KEAQ IADDVFSLFVSEEVDKVEL+YTKFVSLVKSDPVIHTLLPLS +GE CDV G CVDA EDE FRLT+K+GKL VER  +  E    SP++QFEQDPVQILDA++PLYLNSQILRALQESLASELASRM+AMSNATDNA+ELKKNL++ YNR RQAKITGE+LEIVAGA+AL
Sbjct:  181 KKGNAYFSRRDEFDVDKCIEGGGVFPTTKEAQVIADDVFSLFVSEEVDKVELVYTKFVSLVKSDPVIHTLLPLSMKGESCDVKGECVDAIEDEMFRLTSKDGKLAVERTKLEVEKPEISPLMQFEQDPVQILDAMMPLYLNSQILRALQESLASELASRMNAMSNATDNAVELKKNLTMAYNRARQAKITGELLEIVAGAEAL 383          
BLAST of CF417522 vs. ExPASy Swiss-Prot
Match: ATPG_CHLRE (ATP synthase gamma chain, chloroplastic OS=Chlamydomonas reinhardtii GN=ATPC PE=1 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 5.921e-63
Identity = 118/201 (58.71%), Postives = 157/201 (78.11%), Query Frame = 1
Query:    1 KKGNAYFLRRPYIPVDRFLEGGSLPTAKEAQTIADDVFSLFVSEEVDKVELLYTKFVSLVKSDPVIHTLLPLSPRGEICDVNGVCVDAAEDEFFRLTTKEGKLTVERDVVRTETASFSPILQFEQDPVQILDALLPLYLNSQILRALQESLASELASRMSAMSNATDNAMELKKNLSIVYNRQRQAKITGEILEIVAGADA 603
            +KG  YF RR    + +    G+ P+ KEAQ IAD++F+ F+++E DKVEL++TKF+SL+ S+P I TLLP++P GE+CDV+G CVDAA+DE F+LTTK G+  VER+    ET +  P L FEQ+P QILDALLPLY++S +LR+LQE+LASELA+RM+AM+NA+DNA ELKK L++ YN+QRQAKIT E+ EIV GA A
Sbjct:  155 RKGAQYFARRKQYNIVKSFSLGAAPSTKEAQGIADEIFASFIAQESDKVELVFTKFISLINSNPTIQTLLPMTPMGELCDVDGKCVDAADDEIFKLTTKGGEFAVEREKTTIETEALDPSLIFEQEPAQILDALLPLYMSSCLLRSLQEALASELAARMNAMNNASDNAKELKKGLTVQYNKQRQAKITQELAEIVGGAAA 355          
BLAST of CF417522 vs. ExPASy Swiss-Prot
Match: ATPG_VIGUN (ATP synthase subunit gamma, chloroplastic (Fragment) OS=Vigna unguiculata PE=1 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.322e-54
Identity = 107/114 (93.86%), Postives = 112/114 (98.25%), Query Frame = 1
Query:  154 LYTKFVSLVKSDPVIHTLLPLSPRGEICDVNGVCVDAAEDEFFRLTTKEGKLTVERDVVRTETASFSPILQFEQDPVQILDALLPLYLNSQILRALQESLASELASRMSAMSNA 495
            LYTKFVSLVKSDPVIHTLLPLSP+GEICD+NGVCVDAAEDEFFRLTTKEGKLTVERDVVRT+T  +SPILQFEQDPVQILDALLPLYLNSQILRALQESLASELA+RMSAMSNA
Sbjct:    3 LYTKFVSLVKSDPVIHTLLPLSPKGEICDINGVCVDAAEDEFFRLTTKEGKLTVERDVVRTKTTDYSPILQFEQDPVQILDALLPLYLNSQILRALQESLASELAARMSAMSNA 116          
BLAST of CF417522 vs. ExPASy Swiss-Prot
Match: ATPG_CYAP4 (ATP synthase gamma chain OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=atpG PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 2.945e-54
Identity = 117/203 (57.64%), Postives = 148/203 (72.91%), Query Frame = 1
Query:    1 KKGNAYFLRRPYIPVDRFLEG-GSLPTAKEAQTIADDVFSLFVSEEVDKVELLYTKFVSLVKSDPVIHTLLPLSPRGEICDVNGVCVDAAEDEFFRLTTKEGKLTVERDVVRTETASFSPILQFEQDPVQILDALLPLYLNSQILRALQESLASELASRMSAMSNATDNAMELKKNLSIVYNRQRQAKITGEILEIVAGADAL 606
            +K   YF RR   P+D    G   +PTA EA  IAD++ SLF+SE VD+VEL+YTKFVSL+ S PV+ TLLPL P+G         ++A +DE FRLTT+ G+  V+R+ V + T S    + FEQDP+QILDALLPLYLN+Q+LRALQES ASELA+RM+AM+NA+DNA EL K LS+ YN+ RQA IT EILE+V GA+AL
Sbjct:  122 RKAIQYFQRREQ-PIDATYTGLEQVPTAAEASQIADELLSLFLSESVDRVELVYTKFVSLISSRPVVQTLLPLDPQG---------LEAQDDEIFRLTTRGGRFEVQREKVSSATQSMPQDMIFEQDPLQILDALLPLYLNNQLLRALQESAASELAARMTAMNNASDNAKELIKGLSMTYNKARQAAITQEILEVVGGAEAL 314          
BLAST of CF417522 vs. ExPASy Swiss-Prot
Match: ATPG_NOSP7 (ATP synthase gamma chain OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=atpG PE=3 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 5.024e-54
Identity = 114/203 (56.16%), Postives = 149/203 (73.40%), Query Frame = 1
Query:    1 KKGNAYFLRRPYIPVDRFLEG-GSLPTAKEAQTIADDVFSLFVSEEVDKVELLYTKFVSLVKSDPVIHTLLPLSPRGEICDVNGVCVDAAEDEFFRLTTKEGKLTVERDVVRTETASFSPILQFEQDPVQILDALLPLYLNSQILRALQESLASELASRMSAMSNATDNAMELKKNLSIVYNRQRQAKITGEILEIVAGADAL 606
            +K   YF RR   P+D    G   +PTA EA  IAD + SLF+SEEVD++EL+YT+F+SLV S PV+ TLLPL P+G         ++AA+DE FRLTT+ GK  VER+ V ++    +P + FEQDPVQILD+LLPLYL++Q+LRALQES ASELA+RM+AMSNA++NA EL   L++ YN+ RQA IT E+LE+V GA+AL
Sbjct:  122 RKSTQYFQRRDQ-PIDATYSGLEQIPTAAEANQIADQLLSLFLSEEVDRIELIYTRFLSLVSSRPVVQTLLPLDPQG---------LEAADDEIFRLTTRGGKFEVEREKVASQVRPLAPDMIFEQDPVQILDSLLPLYLSNQLLRALQESAASELAARMTAMSNASENAGELINTLTLSYNKARQAAITQELLEVVGGAEAL 314          
The following BLAST results are available for this feature:
BLAST of CF417522 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPG_TOBAC6.696e-9989.66ATP synthase gamma chain, chloroplastic OS=Nicotia... [more]
ATPG1_ARATH4.063e-9686.70ATP synthase gamma chain 1, chloroplastic OS=Arabi... [more]
ATPG_SPIOL6.486e-9485.71ATP synthase gamma chain, chloroplastic OS=Spinaci... [more]
ATPG_PEA1.223e-9287.37ATP synthase gamma chain, chloroplastic OS=Pisum s... [more]
ATPG_MAIZE9.692e-9082.67ATP synthase subunit gamma, chloroplastic OS=Zea m... [more]
ATPG2_ARATH1.148e-8277.83ATP synthase gamma chain 2, chloroplastic OS=Arabi... [more]
ATPG_CHLRE5.921e-6358.71ATP synthase gamma chain, chloroplastic OS=Chlamyd... [more]
ATPG_VIGUN1.322e-5493.86ATP synthase subunit gamma, chloroplastic (Fragmen... [more]
ATPG_CYAP42.945e-5457.64ATP synthase gamma chain OS=Cyanothece sp. (strain... [more]
ATPG_NOSP75.024e-5456.16ATP synthase gamma chain OS=Nostoc punctiforme (st... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-452 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-006_B12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417522 ID=CF417522; Name=CF417522; organism=Citrus sinensis; type=EST; length=727bp
AAGAAGGGTAATGCATATTTCCTTCGTAGGCCTTATATTCCTGTTGATAG
ATTTCTTGAGGGAGGTTCATTACCTACTGCTAAAGAAGCTCAGACTATAG
CAGATGATGTGTTTTCACTCTTTGTTAGTGAAGAAGTTGACAAGGTGGAG
CTTTTATACACAAAGTTTGTGTCTTTGGTTAAGTCTGATCCTGTGATTCA
CACTTTGCTTCCACTATCACCGAGGGGAGAGATTTGTGATGTGAATGGTG
TTTGCGTTGATGCTGCTGAGGATGAGTTCTTTAGATTGACAACTAAGGAA
GGAAAGTTAACTGTTGAGAGAGATGTTGTGAGAACTGAGACTGCTTCTTT
CTCACCCATTTTGCAATTTGAGCAGGACCCAGTTCAGATTCTTGATGCTC
TTTTGCCCCTCTATCTAAACAGCCAGATCTTGAGGGCTTTGCAGGAATCC
TTAGCCAGCGAGCTTGCTTCAAGAATGAGTGCCATGAGCAATGCAACTGA
TAATGCAATGGAGTTGAAGAAGAACTTGTCTATCGTCTACAACAGGCAGC
GCCAGGCCAAAATTACTGGAGAGATTTTGGAGATTGTTGCTGGTGCCGAT
GCTTTAGTGTAAAGAATTATGCGGGGCTTCTCACATCTTACTCAATTGTC
CATCTTTGTAGGCAATTTTACGACTGTTTCCCTTATTGATTCAAATATGC
TTGGTTTACCAGGAGTTATTCAGAATT
back to top