CF417557

Overview
NameCF417557
Unique NameCF417557
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length712
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417557 vs. ExPASy Swiss-Prot
Match: PTH2_HUMAN (Peptidyl-tRNA hydrolase 2, mitochondrial OS=Homo sapiens GN=PTRH2 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.041e-24
Identity = 44/131 (33.59%), Postives = 70/131 (53.44%), Query Frame = 3
Query:  123 SLAVSFRPENFIPGLVIGFIFGMLLDLSKP---GKNYVKKKNFLPRKPQEQVSVSSDGDQDLKLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEM*AGISCGK 506
            SL + +       GL +G   GM L  S     G     K +      + + S+  D  +  K+ LVVR DLKMG GK+A+QC+HAA   Y ++ + +  +L++WE CGQPK+VV   +++ + A ++  K
Sbjct:    5 SLVMEYLAHPSTLGLAVGVACGMCLGWSLRVCFGMLPKSKTSKTHTDTESEASILGDSGE-YKMILVVRNDLKMGKGKVAAQCSHAAVSAYKQIQRRNPEMLKQWEYCGQPKVVVKAPDEETLIALLAHAK 134          

HSP 2 Score: 54.6842 bits (130), Expect = 7.041e-24
Identity = 25/46 (54.35%), Postives = 33/46 (71.74%), Query Frame = 2
Query:  509 AENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRL 646
            A+  GL   ++ DAGRTQ++ GS+TVL IGPGP  L+D VTG  +L
Sbjct:  133 AKMLGLTVSLIQDAGRTQIAPGSQTVLGIGPGPADLIDKVTGHLKL 178          
BLAST of CF417557 vs. ExPASy Swiss-Prot
Match: PTH2_BOVIN (Peptidyl-tRNA hydrolase 2, mitochondrial OS=Bos taurus GN=PTRH2 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.552e-23
Identity = 40/101 (39.60%), Postives = 61/101 (60.40%), Query Frame = 3
Query:  183 FGMLLDLSKPGKNYVKKKNFLPRKPQEQVSVSSDGDQ-DLKLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEM 482
            FGML       K+ V++ N     P  +   S  G+  + K+ LVVR DLKMG GK+A+QC+HAA   Y ++ + +  LL++WE CGQPK+VV   +++ +
Sbjct:   37 FGML------PKSSVRETN-----PDTETEASILGESGEYKMILVVRNDLKMGKGKVAAQCSHAAVSAYKQIQRRNPELLKEWEYCGQPKVVVKAPDEETL 126          

HSP 2 Score: 54.6842 bits (130), Expect = 1.552e-23
Identity = 25/46 (54.35%), Postives = 33/46 (71.74%), Query Frame = 2
Query:  509 AENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRL 646
            A+  GL   ++ DAGRTQ++ GS+TVL IGPGP  L+D VTG  +L
Sbjct:  133 AKVLGLTVSLIQDAGRTQIAPGSRTVLGIGPGPADLIDKVTGHLKL 178          
BLAST of CF417557 vs. ExPASy Swiss-Prot
Match: PTH2_MOUSE (Peptidyl-tRNA hydrolase 2, mitochondrial OS=Mus musculus GN=Ptrh2 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.755e-22
Identity = 29/63 (46.03%), Postives = 43/63 (68.25%), Query Frame = 3
Query:  294 DLKLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEM 482
            + K+ LVVR DLKMG GK+A+QC+HAA   Y +  +    +L++WE CGQPK+VV   ++  +
Sbjct:   66 EYKMILVVRTDLKMGKGKVAAQCSHAAVSAYKQTQRRSPQVLKEWEYCGQPKVVVKAPDEDTL 128          

HSP 2 Score: 55.0694 bits (131), Expect = 4.755e-22
Identity = 25/46 (54.35%), Postives = 32/46 (69.57%), Query Frame = 2
Query:  509 AENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRL 646
            A+  GL   ++ DAGRTQ+  GS+TVL IGPGP  L+D VTG  +L
Sbjct:  135 AKTLGLTVSLIQDAGRTQIEPGSRTVLGIGPGPVELIDEVTGHLKL 180          
BLAST of CF417557 vs. ExPASy Swiss-Prot
Match: PTH2_SCHPO (Probable peptidyl-tRNA hydrolase 2 OS=Schizosaccharomyces pombe GN=SPAC19A8.14 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 8.555e-21
Identity = 45/147 (30.61%), Postives = 66/147 (44.90%), Query Frame = 3
Query:  120 VSLAVSFRPENFIPGLVIGFIFGMLLDLSKPGKNYVKKKNFLPRKPQEQ--VSVSSDGDQD------------------------LKLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEM 482
            V+  +S  P   + G V+GF+ G    ++   + Y  K       P+++  VSVS+D D +                         K+ LVVR DL M  GKIA+QCAHAA   Y      D  L+R WE  GQ KI +  + ++ +
Sbjct:    6 VNFMISSFPAAVLVGAVVGFMIGRKYSVADASRGYSSKNANKASNPEKESPVSVSNDEDSESETELLDMLKGNSSLAALALAEGQTKMVLVVRTDLGMTKGKIAAQCAHAALACYKIASAVDPDLVRIWENAGQAKITLQAQTEETL 152          

HSP 2 Score: 52.7582 bits (125), Expect = 8.555e-21
Identity = 25/46 (54.35%), Postives = 34/46 (73.91%), Query Frame = 2
Query:  509 AENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRL 646
            A + GL   V+ DAGRTQ+++GS TVL IGPGP S+++ VTG  +L
Sbjct:  159 AMSLGLCARVIHDAGRTQIASGSATVLGIGPGPVSVINEVTGSLKL 204          
BLAST of CF417557 vs. ExPASy Swiss-Prot
Match: PTH2_DROME (Probable peptidyl-tRNA hydrolase 2 OS=Drosophila melanogaster GN=CG1307 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.458e-20
Identity = 35/77 (45.45%), Postives = 45/77 (58.44%), Query Frame = 3
Query:  264 QVSVSSDG----DQDLKLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEM 482
            + SVS  G    + + K+ LVVR DLKMG GKIA+QC H A G Y   +     LLR WE CG  KI V  +++ E+
Sbjct:   57 EASVSDKGYGGLNDNFKMVLVVRNDLKMGKGKIAAQCGHGAVGAYQRAVVRTPRLLRSWENCGCAKIAVRVESEAEL 133          

HSP 2 Score: 50.447 bits (119), Expect = 2.458e-20
Identity = 25/47 (53.19%), Postives = 32/47 (68.09%), Query Frame = 2
Query:  509 AENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 649
            AE   L T ++ DAGRTQ+ A SKTVLA+GP   + +D VTG  +LL
Sbjct:  140 AERQQLNTCLIRDAGRTQIEANSKTVLAVGPAAAADIDRVTGHLKLL 186          
BLAST of CF417557 vs. ExPASy Swiss-Prot
Match: PTH_SULTO (Peptidyl-tRNA hydrolase OS=Sulfolobus tokodaii GN=pth PE=3 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 1.079e-17
Identity = 30/65 (46.15%), Postives = 40/65 (61.54%), Query Frame = 3
Query:  300 KLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHL----LRKWEQCGQPKIVVTCKNQQEM 482
            K+ +VVR DL MG GKIA+Q AHAA  +  +++ S   L    L KW + GQPKIVV   +  E+
Sbjct:    4 KMVIVVRTDLDMGKGKIAAQVAHAAVSLVLDILNSSNSLWKEWLYKWLEEGQPKIVVKVPSLDEL 68          

HSP 2 Score: 54.6842 bits (130), Expect = 1.079e-17
Identity = 25/53 (47.17%), Postives = 34/53 (64.15%), Query Frame = 2
Query:  491 NKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 649
            NK +E A    LPT ++ DAG+TQ+  G+ T + IGP P  LVD +TG  +LL
Sbjct:   69 NKRYEKAIELNLPTTIIQDAGKTQIEPGTITCIGIGPAPVELVDKITGDLKLL 121          
BLAST of CF417557 vs. ExPASy Swiss-Prot
Match: PTH_METS5 (Peptidyl-tRNA hydrolase OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=pth PE=3 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 6.863e-17
Identity = 26/47 (55.32%), Postives = 33/47 (70.21%), Query Frame = 2
Query:  509 AENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 649
            A + GLPT V++DAGRTQV  G+ T   IGPGP  L+D +TG  +LL
Sbjct:   71 ARSQGLPTTVISDAGRTQVEPGTVTCAGIGPGPDDLIDKITGDLKLL 117          

HSP 2 Score: 50.8322 bits (120), Expect = 6.863e-17
Identity = 26/64 (40.62%), Postives = 39/64 (60.94%), Query Frame = 3
Query:  297 LKLALVVRQDLKMGSGKIASQCAHAATGMYAELM--QSDRHLLRKWEQCGQPKIVVTCKNQQEM 482
            +K+ ++VR D+ MG GKIA+Q AHAA  +  + M   S R  L  W   GQPK+VV   + +++
Sbjct:    1 MKMVVMVRTDINMGKGKIAAQVAHAAVSLVLDCMSRSSWRDWLDSWLHEGQPKVVVKVSSLEDL 64          
BLAST of CF417557 vs. ExPASy Swiss-Prot
Match: PTH_SULSO (Peptidyl-tRNA hydrolase OS=Sulfolobus solfataricus GN=pth PE=1 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 8.824e-17
Identity = 27/66 (40.91%), Postives = 41/66 (62.12%), Query Frame = 3
Query:  297 LKLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSD----RHLLRKWEQCGQPKIVVTCKNQQEM 482
            +K+ +VVR D+KMG GKIA+Q AHAA  +   ++ S+    +  L +W   GQPKI+V   +  E+
Sbjct:    2 IKMVIVVRSDIKMGKGKIAAQVAHAAVTLVVSIINSNNLRWKEWLNEWLHQGQPKIIVKVNSLDEI 67          

HSP 2 Score: 52.7582 bits (125), Expect = 8.824e-17
Identity = 24/47 (51.06%), Postives = 33/47 (70.21%), Query Frame = 2
Query:  509 AENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 649
            AE   LP  ++ DAG+TQ+  G+ T L IGP P++LVDS+TG  +LL
Sbjct:   74 AETMNLPFSIIEDAGKTQLEPGTITCLGIGPAPENLVDSITGDLKLL 120          
BLAST of CF417557 vs. ExPASy Swiss-Prot
Match: PTH_PYRFU (Peptidyl-tRNA hydrolase OS=Pyrococcus furiosus GN=pth PE=3 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 1.509e-16
Identity = 29/52 (55.77%), Postives = 37/52 (71.15%), Query Frame = 2
Query:  494 KLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 649
            KL   AE  GLPT ++ DAG T++  G+ TVLAIGPGP+ +VD VTG  +LL
Sbjct:   68 KLKSEAEKLGLPTALIRDAGLTEIPPGTITVLAIGPGPEEVVDKVTGHLKLL 119          

HSP 2 Score: 47.7506 bits (112), Expect = 1.509e-16
Identity = 23/61 (37.70%), Postives = 33/61 (54.10%), Query Frame = 3
Query:  300 KLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEM 482
            K  +V R DLK+  GK+A Q AH A     E  +  R     W + GQ K+VV  +N++E+
Sbjct:    6 KQVIVARSDLKLSKGKLAVQVAHGAVTAAFEAYKKKREWFEAWFREGQKKVVVKAQNEEEL 66          
BLAST of CF417557 vs. ExPASy Swiss-Prot
Match: PTH_SULIY (Peptidyl-tRNA hydrolase OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=pth PE=3 SV=1)

HSP 1 Score: 55.8398 bits (133), Expect = 2.522e-16
Identity = 28/66 (42.42%), Postives = 42/66 (63.64%), Query Frame = 3
Query:  297 LKLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSD----RHLLRKWEQCGQPKIVVTCKNQQEM 482
            +K+ +VVR D+KMG GK+A+Q AHAA  +   ++ S+    +  L +W Q GQPKIVV   +  E+
Sbjct:    2 VKMVIVVRSDIKMGKGKMAAQVAHAAVTLVISIINSNNSRWKEWLNEWLQQGQPKIVVKANSLDEI 67          

HSP 2 Score: 50.447 bits (119), Expect = 2.522e-16
Identity = 22/47 (46.81%), Postives = 32/47 (68.09%), Query Frame = 2
Query:  509 AENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 649
            AE   LP  ++ DAG+TQ+  G+ T L IGP P++L+D +TG  +LL
Sbjct:   74 AETMNLPFSIIEDAGKTQLEPGTITCLGIGPAPENLIDPITGDLKLL 120          
The following BLAST results are available for this feature:
BLAST of CF417557 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
PTH2_HUMAN7.041e-2433.59Peptidyl-tRNA hydrolase 2, mitochondrial OS=Homo s... [more]
PTH2_BOVIN1.552e-2339.60Peptidyl-tRNA hydrolase 2, mitochondrial OS=Bos ta... [more]
PTH2_MOUSE4.755e-2246.03Peptidyl-tRNA hydrolase 2, mitochondrial OS=Mus mu... [more]
PTH2_SCHPO8.555e-2130.61Probable peptidyl-tRNA hydrolase 2 OS=Schizosaccha... [more]
PTH2_DROME2.458e-2045.45Probable peptidyl-tRNA hydrolase 2 OS=Drosophila m... [more]
PTH_SULTO1.079e-1746.15Peptidyl-tRNA hydrolase OS=Sulfolobus tokodaii GN=... [more]
PTH_METS56.863e-1755.32Peptidyl-tRNA hydrolase OS=Metallosphaera sedula (... [more]
PTH_SULSO8.824e-1740.91Peptidyl-tRNA hydrolase OS=Sulfolobus solfataricus... [more]
PTH_PYRFU1.509e-1655.77Peptidyl-tRNA hydrolase OS=Pyrococcus furiosus GN=... [more]
PTH_SULIY2.522e-1642.42Peptidyl-tRNA hydrolase OS=Sulfolobus islandicus (... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-487 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-006_F01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417557 ID=CF417557; Name=CF417557; organism=Citrus sinensis; type=EST; length=712bp
GTCCGTGCAACTGTTAACCACGCAATCAGTAATCTGTTCATAATCTGTTA
ACGACGATGTGGGCTTCCCAGCAAAACTCTTCTCAGCTTTCTAACAAGAA
GCAGCAGAAGCAGGAAAAAGTATCGTTAGCAGTGAGTTTTAGGCCAGAGA
ATTTCATCCCAGGCCTTGTAATTGGTTTCATTTTTGGGATGTTATTAGAT
TTATCAAAGCCAGGTAAGAATTATGTGAAAAAGAAAAATTTCTTACCGAG
GAAACCACAAGAACAAGTTTCTGTCTCAAGTGACGGTGACCAAGACCTCA
AATTGGCTTTGGTGGTTAGGCAAGACCTGAAGATGGGGAGTGGAAAGATT
GCATCACAATGTGCCCATGCAGCCACTGGGATGTATGCAGAACTAATGCA
AAGTGACCGGCACCTTCTGAGAAAATGGGAGCAATGTGGGCAGCCCAAGA
TAGTTGTTACGTGCAAGAATCAACAAGAAATGTAAGCAGGAATAAGCTGT
GGGAAGTAGCTGAAAACACGGGCCTTCCAACTTTTGTTGTTGCGGATGCT
GGACGGACACAGGTTTCAGCTGGGTCGAAGACGGTTCTTGCCATCGGACC
TGGACCCAAATCTTTGGTGGATTCTGTGACAGGGAAACAGCGCCTGCTCT
AGTTATGCTTAAGAATGGAGGACTTTTTGCTTAAATTTCCCCGGATGACA
ATGTTAAAAGAT
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