CF417558

Overview
NameCF417558
Unique NameCF417558
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length726
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF417558_ssr10 microsatellite CF417558_ssr10:10..29. BLAST: Citrus ESTs to Prunus persica proteins V1
CF417558_ssr66 microsatellite CF417558_ssr66:66..77. BLAST: Citrus ESTs to Prunus persica proteins V1
CF417558_ssr124 microsatellite CF417558_ssr124:124..135. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2239 contig Csv1_Contig2239:24..748. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417558 vs. ExPASy Swiss-Prot
Match: H2AV3_ORYSJ (Probable histone H2A variant 3 OS=Oryza sativa subsp. japonica GN=Os03g0743400 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 8.103e-40
Identity = 79/113 (69.91%), Postives = 83/113 (73.45%), Query Frame = 2
Query:  185 KGLITGKTTIXXXXXXXXXX--PVSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAG 517
            KGL+  KTT             PVSRSSRAGLQFPVGR+HR LK+              Y+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAG
Sbjct:    7 KGLLAAKTTAAKSAEKDKGKKAPVSRSSRAGLQFPVGRIHRQLKQRTQANGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAG 119          

HSP 2 Score: 42.743 bits (99), Expect = 8.103e-40
Identity = 19/19 (100.00%), Postives = 19/19 (100.00%), Query Frame = 3
Query:  516 GGGVIPHIHKSLINKSSKE 572
            GGGVIPHIHKSLINKSSKE
Sbjct:  119 GGGVIPHIHKSLINKSSKE 137          
BLAST of CF417558 vs. ExPASy Swiss-Prot
Match: H2AV3_ARATH (Probable histone H2A variant 3 OS=Arabidopsis thaliana GN=At1g52740 PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 8.114e-40
Identity = 80/112 (71.43%), Postives = 84/112 (75.00%), Query Frame = 2
Query:  182 AKGLITGKTTIXXXXXXXXXXPVSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAG 517
            AKGLI GK +           P++RSSRAGLQFPVGRVHRLLK               YTAAILEYLTAEVLELAGNASKDLKVKRI+PRHLQLAIRGDEELDTLIKGTIAG
Sbjct:    6 AKGLIMGKPS-GSDKDKDKKKPITRSSRAGLQFPVGRVHRLLKTRSTAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRISPRHLQLAIRGDEELDTLIKGTIAG 116          

HSP 2 Score: 41.5874 bits (96), Expect = 8.114e-40
Identity = 18/19 (94.74%), Postives = 19/19 (100.00%), Query Frame = 3
Query:  516 GGGVIPHIHKSLINKSSKE 572
            GGGVIPHIHKSLINKS+KE
Sbjct:  116 GGGVIPHIHKSLINKSAKE 134          
BLAST of CF417558 vs. ExPASy Swiss-Prot
Match: H2AV1_ORYSJ (Probable histone H2A variant 1 OS=Oryza sativa subsp. japonica GN=Os03g0162200 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 3.960e-39
Identity = 79/114 (69.30%), Postives = 82/114 (71.93%), Query Frame = 2
Query:  185 KGLITGKTTIXXXXXXXXXX---PVSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAG 517
            KGL+  KTT              PVSRSSRAGLQFPVGR+HR LK               Y+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAG
Sbjct:    7 KGLLAAKTTAAKSADKDKDKKKAPVSRSSRAGLQFPVGRIHRQLKSRASAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAG 120          

HSP 2 Score: 41.5874 bits (96), Expect = 3.960e-39
Identity = 18/19 (94.74%), Postives = 19/19 (100.00%), Query Frame = 3
Query:  516 GGGVIPHIHKSLINKSSKE 572
            GGGVIPHIHKSLINK+SKE
Sbjct:  120 GGGVIPHIHKSLINKTSKE 138          
BLAST of CF417558 vs. ExPASy Swiss-Prot
Match: H2AV2_ORYSJ (Probable histone H2A variant 2 OS=Oryza sativa subsp. japonica GN=Os10g0418000 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.141e-38
Identity = 79/115 (68.70%), Postives = 82/115 (71.30%), Query Frame = 2
Query:  185 KGLITGKTTIXXXXXXXXXX----PVSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAG 517
            KGL+  KTT               PVSRSSRAG+QFPVGR+HR LK               YTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAG
Sbjct:    7 KGLLAAKTTAAKAAADKDKDRKKAPVSRSSRAGIQFPVGRIHRQLKGRVSANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAG 121          

HSP 2 Score: 40.4318 bits (93), Expect = 1.141e-38
Identity = 17/19 (89.47%), Postives = 19/19 (100.00%), Query Frame = 3
Query:  516 GGGVIPHIHKSLINKSSKE 572
            GGGVIPHIHKSLINK++KE
Sbjct:  121 GGGVIPHIHKSLINKTAKE 139          
BLAST of CF417558 vs. ExPASy Swiss-Prot
Match: H2AV1_ARATH (Histone H2A variant 1 OS=Arabidopsis thaliana GN=H2AV PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 7.280e-38
Identity = 75/112 (66.96%), Postives = 81/112 (72.32%), Query Frame = 2
Query:  185 KGLITGKT-TIXXXXXXXXXXPVSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAG 517
            KGL+  KT             P+SRS+RAG+QFPVGR+HR LK               YTA+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAG
Sbjct:    7 KGLVAAKTMAANKDKDKDKKKPISRSARAGIQFPVGRIHRQLKTRVSAHGRVGATAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAG 118          

HSP 2 Score: 40.4318 bits (93), Expect = 7.280e-38
Identity = 17/19 (89.47%), Postives = 19/19 (100.00%), Query Frame = 3
Query:  516 GGGVIPHIHKSLINKSSKE 572
            GGGVIPHIHKSLINK++KE
Sbjct:  118 GGGVIPHIHKSLINKTTKE 136          
BLAST of CF417558 vs. ExPASy Swiss-Prot
Match: H2AV2_ARATH (Probable histone H2A variant 2 OS=Arabidopsis thaliana GN=At2g38810 PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.843e-32
Identity = 80/134 (59.70%), Postives = 92/134 (68.66%), Query Frame = 2
Query:  185 KGLITGKTTIXXXXXXXXXXP-VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGWRSYSSYPQVPHQ*ILQRVVRD 583
            KGL+  KTT             +SRSSRAG+QFPVGR+HR LK+              YTA+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAG       P + H+ ++ +V +D
Sbjct:    7 KGLLAAKTTAAAANKDSVKKKSISRSSRAGIQFPVGRIHRQLKQRVSAHGRVGATAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGG---GVIPHI-HKSLVNKVTKD 136          
BLAST of CF417558 vs. ExPASy Swiss-Prot
Match: H2AZ_USTMA (Histone H2A.Z OS=Ustilago maydis GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.618e-30
Identity = 60/89 (67.42%), Postives = 72/89 (80.90%), Query Frame = 2
Query:  251 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAG 517
            ++S+RAGLQFPVGR+HR LK               YT+AILEYLTAEVLELAGNASKD+++KRITPRHLQLAIRGDEELD++++ TIAG
Sbjct:   25 TQSARAGLQFPVGRIHRHLKSRTQNHVRIGAKAAVYTSAILEYLTAEVLELAGNASKDMRLKRITPRHLQLAIRGDEELDSMVRATIAG 113          

HSP 2 Score: 32.7278 bits (73), Expect = 1.618e-30
Identity = 13/19 (68.42%), Postives = 16/19 (84.21%), Query Frame = 3
Query:  516 GGGVIPHIHKSLINKSSKE 572
            GGGV+PHIHK+LI   SK+
Sbjct:  113 GGGVLPHIHKTLIKAPSKK 131          
BLAST of CF417558 vs. ExPASy Swiss-Prot
Match: H2AZL_XENTR (Histone H2A.Z-like OS=Xenopus tropicalis GN=h2a.zl PE=2 SV=3)

HSP 1 Score: 132.494 bits (332), Expect = 2.253e-30
Identity = 69/90 (76.67%), Postives = 73/90 (81.11%), Query Frame = 2
Query:  248 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAG 517
            ++RSSRAGLQFPVGR+HRLLK               YTAAILEYLTAEVLELAGNASKDLKVKRI+PRHLQLAIRGDEELD LIK TIAG
Sbjct:   18 ITRSSRAGLQFPVGRIHRLLKNRTTSHGRVGGTAAVYTAAILEYLTAEVLELAGNASKDLKVKRISPRHLQLAIRGDEELDALIKATIAG 107          
BLAST of CF417558 vs. ExPASy Swiss-Prot
Match: H2AZL_XENLA (Histone H2A.Z-like OS=Xenopus laevis GN=h2a.zl1 PE=2 SV=3)

HSP 1 Score: 132.494 bits (332), Expect = 2.253e-30
Identity = 69/90 (76.67%), Postives = 73/90 (81.11%), Query Frame = 2
Query:  248 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAG 517
            ++RSSRAGLQFPVGR+HRLLK               YTAAILEYLTAEVLELAGNASKDLKVKRI+PRHLQLAIRGDEELD LIK TIAG
Sbjct:   18 ITRSSRAGLQFPVGRIHRLLKNRTTSHGRVGGTAAVYTAAILEYLTAEVLELAGNASKDLKVKRISPRHLQLAIRGDEELDALIKATIAG 107          
BLAST of CF417558 vs. ExPASy Swiss-Prot
Match: H2AV_CAEEL (Histone H2A.V OS=Caenorhabditis elegans GN=htz-1 PE=2 SV=3)

HSP 1 Score: 132.109 bits (331), Expect = 2.943e-30
Identity = 69/90 (76.67%), Postives = 73/90 (81.11%), Query Frame = 2
Query:  248 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAG 517
            VSRS+RAGLQFPVGR+HR LK+              Y+AAILEYLTAEVLELAGNASKDLKVKRITPRHL LAIRGDEELDTLIK TIAG
Sbjct:   20 VSRSARAGLQFPVGRIHRFLKQRTTSSGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLHLAIRGDEELDTLIKATIAG 109          
The following BLAST results are available for this feature:
BLAST of CF417558 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 235
Match NameE-valueIdentityDescription
H2AV3_ORYSJ8.103e-4069.91Probable histone H2A variant 3 OS=Oryza sativa sub... [more]
H2AV3_ARATH8.114e-4071.43Probable histone H2A variant 3 OS=Arabidopsis thal... [more]
H2AV1_ORYSJ3.960e-3969.30Probable histone H2A variant 1 OS=Oryza sativa sub... [more]
H2AV2_ORYSJ1.141e-3868.70Probable histone H2A variant 2 OS=Oryza sativa sub... [more]
H2AV1_ARATH7.280e-3866.96Histone H2A variant 1 OS=Arabidopsis thaliana GN=H... [more]
H2AV2_ARATH1.843e-3259.70Probable histone H2A variant 2 OS=Arabidopsis thal... [more]
H2AZ_USTMA1.618e-3067.42Histone H2A.Z OS=Ustilago maydis GN=HTZ1 PE=3 SV=1[more]
H2AZL_XENTR2.253e-3076.67Histone H2A.Z-like OS=Xenopus tropicalis GN=h2a.zl... [more]
H2AZL_XENLA2.253e-3076.67Histone H2A.Z-like OS=Xenopus laevis GN=h2a.zl1 PE... [more]
H2AV_CAEEL2.943e-3076.67Histone H2A.V OS=Caenorhabditis elegans GN=htz-1 P... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-488 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-006_F02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417558 ID=CF417558; Name=CF417558; organism=Citrus sinensis; type=EST; length=726bp
GTCACTCGTTCTCTCTCTCTCTCTCTCTCACACACAAAAATCTCAAACGC
TCGCTTTGCTTTATCTCTTTCTTTCTTCTCCGATAATTTTCATCTCAGAA
AAAATTAAAAATAATTAAATAAATAATTAATTAATTTAAAAGAAGCTGTA
GCAATTAGGCGGGAAAATGTCGGGCAAAGGAGCCAAAGGACTGATAACAG
GCAAAACCACCATTAACAACAACAAGGATAAGGACAAGAAGAAACCCGTC
TCCCGTTCTTCTCGTGCTGGTCTTCAGTTCCCAGTGGGAAGGGTCCATCG
TCTACTAAAGGAAAGGGCTGCTGCTCACGGAAGGGTTGGCGCAACAGCTG
CTGTTTATACAGCAGCCATTTTGGAATATCTAACTGCCGAAGTGTTGGAG
TTGGCAGGGAATGCTAGCAAGGATTTGAAGGTCAAACGTATTACTCCAAG
GCATTTGCAGCTTGCTATCCGAGGAGATGAAGAACTTGACACTCTCATTA
AAGGAACCATAGCCGGGTGGAGGAGTTATTCCTCATATCCACAAGTCCCT
CATCAATAAATCCTCCAAAGAGTAGTTCGTGACACCGTCATCCTCTCGGC
TTTGTTTATGTGTGTACTTTTAGCTGTGCTGAAATATCTAAATGAGAAAT
GATGCCAAAGATGTGTTAATGCTAGGAATCTGCATTCTTCAATCCTCATT
TCATGCAGCGACGAATTATGGTGCTT
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