CF417558
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF417558 vs. ExPASy Swiss-Prot
Match: H2AV3_ORYSJ (Probable histone H2A variant 3 OS=Oryza sativa subsp. japonica GN=Os03g0743400 PE=2 SV=1) HSP 1 Score: 142.51 bits (358), Expect = 8.103e-40 Identity = 79/113 (69.91%), Postives = 83/113 (73.45%), Query Frame = 2 Query: 185 KGLITGKTTIXXXXXXXXXX--PVSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAG 517 KGL+ KTT PVSRSSRAGLQFPVGR+HR LK+ Y+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAG Sbjct: 7 KGLLAAKTTAAKSAEKDKGKKAPVSRSSRAGLQFPVGRIHRQLKQRTQANGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAG 119 HSP 2 Score: 42.743 bits (99), Expect = 8.103e-40 Identity = 19/19 (100.00%), Postives = 19/19 (100.00%), Query Frame = 3 Query: 516 GGGVIPHIHKSLINKSSKE 572 GGGVIPHIHKSLINKSSKE Sbjct: 119 GGGVIPHIHKSLINKSSKE 137
BLAST of CF417558 vs. ExPASy Swiss-Prot
Match: H2AV3_ARATH (Probable histone H2A variant 3 OS=Arabidopsis thaliana GN=At1g52740 PE=1 SV=1) HSP 1 Score: 143.665 bits (361), Expect = 8.114e-40 Identity = 80/112 (71.43%), Postives = 84/112 (75.00%), Query Frame = 2 Query: 182 AKGLITGKTTIXXXXXXXXXXPVSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAG 517 AKGLI GK + P++RSSRAGLQFPVGRVHRLLK YTAAILEYLTAEVLELAGNASKDLKVKRI+PRHLQLAIRGDEELDTLIKGTIAG Sbjct: 6 AKGLIMGKPS-GSDKDKDKKKPITRSSRAGLQFPVGRVHRLLKTRSTAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRISPRHLQLAIRGDEELDTLIKGTIAG 116 HSP 2 Score: 41.5874 bits (96), Expect = 8.114e-40 Identity = 18/19 (94.74%), Postives = 19/19 (100.00%), Query Frame = 3 Query: 516 GGGVIPHIHKSLINKSSKE 572 GGGVIPHIHKSLINKS+KE Sbjct: 116 GGGVIPHIHKSLINKSAKE 134
BLAST of CF417558 vs. ExPASy Swiss-Prot
Match: H2AV1_ORYSJ (Probable histone H2A variant 1 OS=Oryza sativa subsp. japonica GN=Os03g0162200 PE=2 SV=1) HSP 1 Score: 141.354 bits (355), Expect = 3.960e-39 Identity = 79/114 (69.30%), Postives = 82/114 (71.93%), Query Frame = 2 Query: 185 KGLITGKTTIXXXXXXXXXX---PVSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAG 517 KGL+ KTT PVSRSSRAGLQFPVGR+HR LK Y+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAG Sbjct: 7 KGLLAAKTTAAKSADKDKDKKKAPVSRSSRAGLQFPVGRIHRQLKSRASAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAG 120 HSP 2 Score: 41.5874 bits (96), Expect = 3.960e-39 Identity = 18/19 (94.74%), Postives = 19/19 (100.00%), Query Frame = 3 Query: 516 GGGVIPHIHKSLINKSSKE 572 GGGVIPHIHKSLINK+SKE Sbjct: 120 GGGVIPHIHKSLINKTSKE 138
BLAST of CF417558 vs. ExPASy Swiss-Prot
Match: H2AV2_ORYSJ (Probable histone H2A variant 2 OS=Oryza sativa subsp. japonica GN=Os10g0418000 PE=2 SV=1) HSP 1 Score: 140.969 bits (354), Expect = 1.141e-38 Identity = 79/115 (68.70%), Postives = 82/115 (71.30%), Query Frame = 2 Query: 185 KGLITGKTTIXXXXXXXXXX----PVSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAG 517 KGL+ KTT PVSRSSRAG+QFPVGR+HR LK YTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAG Sbjct: 7 KGLLAAKTTAAKAAADKDKDRKKAPVSRSSRAGIQFPVGRIHRQLKGRVSANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAG 121 HSP 2 Score: 40.4318 bits (93), Expect = 1.141e-38 Identity = 17/19 (89.47%), Postives = 19/19 (100.00%), Query Frame = 3 Query: 516 GGGVIPHIHKSLINKSSKE 572 GGGVIPHIHKSLINK++KE Sbjct: 121 GGGVIPHIHKSLINKTAKE 139
BLAST of CF417558 vs. ExPASy Swiss-Prot
Match: H2AV1_ARATH (Histone H2A variant 1 OS=Arabidopsis thaliana GN=H2AV PE=1 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 7.280e-38 Identity = 75/112 (66.96%), Postives = 81/112 (72.32%), Query Frame = 2 Query: 185 KGLITGKT-TIXXXXXXXXXXPVSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAG 517 KGL+ KT P+SRS+RAG+QFPVGR+HR LK YTA+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAG Sbjct: 7 KGLVAAKTMAANKDKDKDKKKPISRSARAGIQFPVGRIHRQLKTRVSAHGRVGATAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAG 118 HSP 2 Score: 40.4318 bits (93), Expect = 7.280e-38 Identity = 17/19 (89.47%), Postives = 19/19 (100.00%), Query Frame = 3 Query: 516 GGGVIPHIHKSLINKSSKE 572 GGGVIPHIHKSLINK++KE Sbjct: 118 GGGVIPHIHKSLINKTTKE 136
BLAST of CF417558 vs. ExPASy Swiss-Prot
Match: H2AV2_ARATH (Probable histone H2A variant 2 OS=Arabidopsis thaliana GN=At2g38810 PE=1 SV=1) HSP 1 Score: 139.428 bits (350), Expect = 1.843e-32 Identity = 80/134 (59.70%), Postives = 92/134 (68.66%), Query Frame = 2 Query: 185 KGLITGKTTIXXXXXXXXXXP-VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGWRSYSSYPQVPHQ*ILQRVVRD 583 KGL+ KTT +SRSSRAG+QFPVGR+HR LK+ YTA+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAG P + H+ ++ +V +D Sbjct: 7 KGLLAAKTTAAAANKDSVKKKSISRSSRAGIQFPVGRIHRQLKQRVSAHGRVGATAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGG---GVIPHI-HKSLVNKVTKD 136
BLAST of CF417558 vs. ExPASy Swiss-Prot
Match: H2AZ_USTMA (Histone H2A.Z OS=Ustilago maydis GN=HTZ1 PE=3 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 1.618e-30 Identity = 60/89 (67.42%), Postives = 72/89 (80.90%), Query Frame = 2 Query: 251 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAG 517 ++S+RAGLQFPVGR+HR LK YT+AILEYLTAEVLELAGNASKD+++KRITPRHLQLAIRGDEELD++++ TIAG Sbjct: 25 TQSARAGLQFPVGRIHRHLKSRTQNHVRIGAKAAVYTSAILEYLTAEVLELAGNASKDMRLKRITPRHLQLAIRGDEELDSMVRATIAG 113 HSP 2 Score: 32.7278 bits (73), Expect = 1.618e-30 Identity = 13/19 (68.42%), Postives = 16/19 (84.21%), Query Frame = 3 Query: 516 GGGVIPHIHKSLINKSSKE 572 GGGV+PHIHK+LI SK+ Sbjct: 113 GGGVLPHIHKTLIKAPSKK 131
BLAST of CF417558 vs. ExPASy Swiss-Prot
Match: H2AZL_XENTR (Histone H2A.Z-like OS=Xenopus tropicalis GN=h2a.zl PE=2 SV=3) HSP 1 Score: 132.494 bits (332), Expect = 2.253e-30 Identity = 69/90 (76.67%), Postives = 73/90 (81.11%), Query Frame = 2 Query: 248 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAG 517 ++RSSRAGLQFPVGR+HRLLK YTAAILEYLTAEVLELAGNASKDLKVKRI+PRHLQLAIRGDEELD LIK TIAG Sbjct: 18 ITRSSRAGLQFPVGRIHRLLKNRTTSHGRVGGTAAVYTAAILEYLTAEVLELAGNASKDLKVKRISPRHLQLAIRGDEELDALIKATIAG 107
BLAST of CF417558 vs. ExPASy Swiss-Prot
Match: H2AZL_XENLA (Histone H2A.Z-like OS=Xenopus laevis GN=h2a.zl1 PE=2 SV=3) HSP 1 Score: 132.494 bits (332), Expect = 2.253e-30 Identity = 69/90 (76.67%), Postives = 73/90 (81.11%), Query Frame = 2 Query: 248 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAG 517 ++RSSRAGLQFPVGR+HRLLK YTAAILEYLTAEVLELAGNASKDLKVKRI+PRHLQLAIRGDEELD LIK TIAG Sbjct: 18 ITRSSRAGLQFPVGRIHRLLKNRTTSHGRVGGTAAVYTAAILEYLTAEVLELAGNASKDLKVKRISPRHLQLAIRGDEELDALIKATIAG 107
BLAST of CF417558 vs. ExPASy Swiss-Prot
Match: H2AV_CAEEL (Histone H2A.V OS=Caenorhabditis elegans GN=htz-1 PE=2 SV=3) HSP 1 Score: 132.109 bits (331), Expect = 2.943e-30 Identity = 69/90 (76.67%), Postives = 73/90 (81.11%), Query Frame = 2 Query: 248 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAG 517 VSRS+RAGLQFPVGR+HR LK+ Y+AAILEYLTAEVLELAGNASKDLKVKRITPRHL LAIRGDEELDTLIK TIAG Sbjct: 20 VSRSARAGLQFPVGRIHRFLKQRTTSSGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLHLAIRGDEELDTLIKATIAG 109 The following BLAST results are available for this feature:
BLAST of CF417558 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 235
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417558 ID=CF417558; Name=CF417558; organism=Citrus sinensis; type=EST; length=726bpback to top |