CF417574
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417574 vs. ExPASy Swiss-Prot
Match: RER1B_ARATH (Protein RER1B OS=Arabidopsis thaliana GN=RER1B PE=2 SV=2) HSP 1 Score: 145.206 bits (365), Expect = 1.446e-46 Identity = 67/128 (52.34%), Postives = 83/128 (64.84%), Query Frame = 1 Query: 1 MEGPGADAASAVAPIAKWRSDFSRMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQGFYIVTYXXXXXXXXXXXXXXSPKIDPEFEALDGASLPTKGSDEFRPFIRRLPEFKFWYAIHKGFLCGF 384 MEG G D+ S P+ K + R++QYYLD++TPH RWIGTL IY LRVY + GFYI++Y SP +DPE E DGA+LPT+GSDEF+PFIRRLPEFKFWY++ K F F Sbjct: 1 MEGSGGDSGSMATPVQKKVHEAWRVYQYYLDKTTPHSTNRWIGTLVFFLIYCLRVYSIHGFYIISYGLGIYLLNLLIGFLSPLVDPELEVSDGATLPTRGSDEFKPFIRRLPEFKFWYSMTKAFCIAF 128 HSP 2 Score: 61.2326 bits (147), Expect = 1.446e-46 Identity = 25/27 (92.59%), Postives = 27/27 (100.00%), Query Frame = 2 Query: 362 TKAFCVAFLMTFFSIFDVPVFWPILLC 442 TKAFC+AFLMTFFS+FDVPVFWPILLC Sbjct: 121 TKAFCIAFLMTFFSVFDVPVFWPILLC 147
BLAST of CF417574 vs. ExPASy Swiss-Prot
Match: RER1A_ARATH (Protein RER1A OS=Arabidopsis thaliana GN=RER1A PE=2 SV=1) HSP 1 Score: 134.035 bits (336), Expect = 3.133e-43 Identity = 64/129 (49.61%), Postives = 82/129 (63.57%), Query Frame = 1 Query: 1 MEGPGADAASAVAPIAKWRSDFSRMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQGFYIVTYXXXXXXXXXXXXXXSPKIDPEFEAL-DGASLPTKGSDEFRPFIRRLPEFKFWYAIHKGFLCGF 384 M+ G D+ S P+ + + R++Q+YLD++TPH RWIGTL A IY LRVY +QGFYI+ Y SP +DPE + DG SLPT+GSDEF+PFIRRLPEFKFWY++ K F F Sbjct: 1 MDESGGDSGSVATPVQQRAHEAWRIYQHYLDKTTPHANYRWIGTLVVALIYCLRVYYIQGFYIIAYGLGIYLLNLLIGFLSPLVDPEAGGVSDGPSLPTRGSDEFKPFIRRLPEFKFWYSMTKAFCIAF 129 HSP 2 Score: 61.2326 bits (147), Expect = 3.133e-43 Identity = 25/27 (92.59%), Postives = 27/27 (100.00%), Query Frame = 2 Query: 362 TKAFCVAFLMTFFSIFDVPVFWPILLC 442 TKAFC+AFLMTFFS+FDVPVFWPILLC Sbjct: 122 TKAFCIAFLMTFFSVFDVPVFWPILLC 148
BLAST of CF417574 vs. ExPASy Swiss-Prot
Match: RER1C_ARATH (Protein RER1C OS=Arabidopsis thaliana GN=RER1C PE=2 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 1.397e-33 Identity = 55/123 (44.72%), Postives = 75/123 (60.98%), Query Frame = 1 Query: 16 ADAASAVAPIAKWRSDFSRMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQGFYIVTYXXXXXXXXXXXXXXSPKIDPEFEALDGASLPTKGSDEFRPFIRRLPEFKFWYAIHKGFLCGF 384 +D++S + + FS+ Q+ LD++ PH L RWI L IY++RVY V+GFYI+TY SP+ DPE G SLPT+ SDE+RPF+RRLPEFKFW +I + F+ GF Sbjct: 28 SDSSSPADAVNRLIHAFSQRQQHLLDKTVPHVLYRWIACLCVVLIYIVRVYFVEGFYIITYAIGIYLLNLIIAFLSPQEDPEASLTSGGSLPTRRSDEYRPFVRRLPEFKFWLSIIRAFIIGF 150 HSP 2 Score: 46.9802 bits (110), Expect = 1.397e-33 Identity = 18/25 (72.00%), Postives = 22/25 (88.00%), Query Frame = 2 Query: 365 KAFCVAFLMTFFSIFDVPVFWPILL 439 +AF + F+MTFF +FDVPVFWPILL Sbjct: 144 RAFIIGFMMTFFEVFDVPVFWPILL 168
BLAST of CF417574 vs. ExPASy Swiss-Prot
Match: RER1_BOVIN (Protein RER1 OS=Bos taurus GN=RER1 PE=2 SV=2) HSP 1 Score: 112.849 bits (281), Expect = 2.969e-30 Identity = 54/104 (51.92%), Postives = 71/104 (68.27%), Query Frame = 1 Query: 70 RMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQGFYIVTYXXXXXXXXXXXXXXSPKIDPEF--EALDGASLPTKGSDEFRPFIRRLPEFKFWYAIHKGFL 375 +++Q +LD+STPH RW+ TL + IY++RVY +QG+YIVTY SPK+DP ++ DG SLPTK ++EFRPFIRRLPEFKFW+A KG L Sbjct: 27 QIYQSWLDKSTPHTAVRWVVTLGLSFIYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATKGIL 130 HSP 2 Score: 38.891 bits (89), Expect = 2.969e-30 Identity = 16/27 (59.26%), Postives = 20/27 (74.07%), Query Frame = 2 Query: 359 STKAFCVAFLMTFFSIFDVPVFWPILL 439 +TK VA + TFF F+VPVFWPIL+ Sbjct: 125 ATKGILVAMVCTFFEAFNVPVFWPILV 151
BLAST of CF417574 vs. ExPASy Swiss-Prot
Match: RER1_RAT (Protein RER1 OS=Rattus norvegicus GN=Rer1 PE=2 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 6.554e-30 Identity = 53/113 (46.90%), Postives = 75/113 (66.37%), Query Frame = 1 Query: 43 IAKWRSDFSRMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQGFYIVTYXXXXXXXXXXXXXXSPKIDPEF--EALDGASLPTKGSDEFRPFIRRLPEFKFWYAIHKGFL 375 + ++ S +++Q +LD+STP+ RW+ TL + +Y++RVY +QG+YIVTY SPK+DP ++ DG SLPTK ++EFRPFIRRLPEFKFW+A KG L Sbjct: 18 VYRFFSRLGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATKGIL 130 HSP 2 Score: 39.2762 bits (90), Expect = 6.554e-30 Identity = 16/27 (59.26%), Postives = 20/27 (74.07%), Query Frame = 2 Query: 359 STKAFCVAFLMTFFSIFDVPVFWPILL 439 +TK VA + TFF F+VPVFWPIL+ Sbjct: 125 ATKGILVAMICTFFEAFNVPVFWPILV 151
BLAST of CF417574 vs. ExPASy Swiss-Prot
Match: RER1_MOUSE (Protein RER1 OS=Mus musculus GN=Rer1 PE=1 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 6.554e-30 Identity = 53/113 (46.90%), Postives = 75/113 (66.37%), Query Frame = 1 Query: 43 IAKWRSDFSRMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQGFYIVTYXXXXXXXXXXXXXXSPKIDPEF--EALDGASLPTKGSDEFRPFIRRLPEFKFWYAIHKGFL 375 + ++ S +++Q +LD+STP+ RW+ TL + +Y++RVY +QG+YIVTY SPK+DP ++ DG SLPTK ++EFRPFIRRLPEFKFW+A KG L Sbjct: 18 VYRFFSRLGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATKGIL 130 HSP 2 Score: 39.2762 bits (90), Expect = 6.554e-30 Identity = 16/27 (59.26%), Postives = 20/27 (74.07%), Query Frame = 2 Query: 359 STKAFCVAFLMTFFSIFDVPVFWPILL 439 +TK VA + TFF F+VPVFWPIL+ Sbjct: 125 ATKGILVAMICTFFEAFNVPVFWPILV 151
BLAST of CF417574 vs. ExPASy Swiss-Prot
Match: RER1_PONAB (Protein RER1 OS=Pongo abelii GN=RER1 PE=2 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.884e-29 Identity = 52/104 (50.00%), Postives = 71/104 (68.27%), Query Frame = 1 Query: 70 RMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQGFYIVTYXXXXXXXXXXXXXXSPKIDPEF--EALDGASLPTKGSDEFRPFIRRLPEFKFWYAIHKGFL 375 +++Q +LD+STP+ RW+ TL + +Y++RVY +QG+YIVTY SPK+DP ++ DG SLPTK ++EFRPFIRRLPEFKFW+A KG L Sbjct: 27 QIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATKGIL 130 HSP 2 Score: 38.891 bits (89), Expect = 1.884e-29 Identity = 16/27 (59.26%), Postives = 20/27 (74.07%), Query Frame = 2 Query: 359 STKAFCVAFLMTFFSIFDVPVFWPILL 439 +TK VA + TFF F+VPVFWPIL+ Sbjct: 125 ATKGILVAMVCTFFDAFNVPVFWPILV 151
BLAST of CF417574 vs. ExPASy Swiss-Prot
Match: RER1_HUMAN (Protein RER1 OS=Homo sapiens GN=RER1 PE=1 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.884e-29 Identity = 52/104 (50.00%), Postives = 71/104 (68.27%), Query Frame = 1 Query: 70 RMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQGFYIVTYXXXXXXXXXXXXXXSPKIDPEF--EALDGASLPTKGSDEFRPFIRRLPEFKFWYAIHKGFL 375 +++Q +LD+STP+ RW+ TL + +Y++RVY +QG+YIVTY SPK+DP ++ DG SLPTK ++EFRPFIRRLPEFKFW+A KG L Sbjct: 27 QIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATKGIL 130 HSP 2 Score: 38.891 bits (89), Expect = 1.884e-29 Identity = 16/27 (59.26%), Postives = 20/27 (74.07%), Query Frame = 2 Query: 359 STKAFCVAFLMTFFSIFDVPVFWPILL 439 +TK VA + TFF F+VPVFWPIL+ Sbjct: 125 ATKGILVAMVCTFFDAFNVPVFWPILV 151
BLAST of CF417574 vs. ExPASy Swiss-Prot
Match: RER1_CHICK (Protein RER1 OS=Gallus gallus GN=RER1 PE=2 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 9.179e-29 Identity = 52/104 (50.00%), Postives = 71/104 (68.27%), Query Frame = 1 Query: 70 RMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQGFYIVTYXXXXXXXXXXXXXXSPKIDPEF--EALDGASLPTKGSDEFRPFIRRLPEFKFWYAIHKGFL 375 +++Q +LD+STP+ RWI TL + IY++RVY +QG+YIVTY SPK+DP ++ DG SLPT+ ++EFRPFIRRLPEFKFW++ KG L Sbjct: 27 QIYQSWLDKSTPYTAVRWIVTLGLSFIYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTRQNEEFRPFIRRLPEFKFWHSATKGIL 130 HSP 2 Score: 38.1206 bits (87), Expect = 9.179e-29 Identity = 16/27 (59.26%), Postives = 19/27 (70.37%), Query Frame = 2 Query: 359 STKAFCVAFLMTFFSIFDVPVFWPILL 439 +TK VA TFF F+VPVFWPIL+ Sbjct: 125 ATKGILVAMACTFFEAFNVPVFWPILV 151
BLAST of CF417574 vs. ExPASy Swiss-Prot
Match: RER1_CAEEL (Protein RER1 homolog OS=Caenorhabditis elegans GN=rer-1 PE=2 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 1.587e-24 Identity = 49/103 (47.57%), Postives = 61/103 (59.22%), Query Frame = 1 Query: 76 FQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQGFYIVTYXXXXXXXXXXXXXXSPKIDP--EFE-ALDGASLPTKGSDEFRPFIRRLPEFKFWYAIHKGFL 375 +QYYLDR TPH RW+ L + + R+ +QGFYIV Y +P IDP EFE DG LP+K +DEFRPF+RRLPEFKFW++ K L Sbjct: 23 YQYYLDRLTPHTAFRWVIALISLVFFASRIILLQGFYIVAYAVGIYYLNLFLLFLTPSIDPALEFEDEDDGPVLPSKTNDEFRPFMRRLPEFKFWHSFMKATL 125 HSP 2 Score: 38.5058 bits (88), Expect = 1.587e-24 Identity = 16/25 (64.00%), Postives = 18/25 (72.00%), Query Frame = 2 Query: 365 KAFCVAFLMTFFSIFDVPVFWPILL 439 KA +A TFF FDVPVFWPIL+ Sbjct: 122 KATLIAITCTFFEFFDVPVFWPILV 146 The following BLAST results are available for this feature:
BLAST of CF417574 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 14
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417574 ID=CF417574; Name=CF417574; organism=Citrus sinensis; type=EST; length=453bpback to top |