CF417574

Overview
NameCF417574
Unique NameCF417574
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length453
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417574 vs. ExPASy Swiss-Prot
Match: RER1B_ARATH (Protein RER1B OS=Arabidopsis thaliana GN=RER1B PE=2 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 1.446e-46
Identity = 67/128 (52.34%), Postives = 83/128 (64.84%), Query Frame = 1
Query:    1 MEGPGADAASAVAPIAKWRSDFSRMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQGFYIVTYXXXXXXXXXXXXXXSPKIDPEFEALDGASLPTKGSDEFRPFIRRLPEFKFWYAIHKGFLCGF 384
            MEG G D+ S   P+ K   +  R++QYYLD++TPH   RWIGTL    IY LRVY + GFYI++Y              SP +DPE E  DGA+LPT+GSDEF+PFIRRLPEFKFWY++ K F   F
Sbjct:    1 MEGSGGDSGSMATPVQKKVHEAWRVYQYYLDKTTPHSTNRWIGTLVFFLIYCLRVYSIHGFYIISYGLGIYLLNLLIGFLSPLVDPELEVSDGATLPTRGSDEFKPFIRRLPEFKFWYSMTKAFCIAF 128          

HSP 2 Score: 61.2326 bits (147), Expect = 1.446e-46
Identity = 25/27 (92.59%), Postives = 27/27 (100.00%), Query Frame = 2
Query:  362 TKAFCVAFLMTFFSIFDVPVFWPILLC 442
            TKAFC+AFLMTFFS+FDVPVFWPILLC
Sbjct:  121 TKAFCIAFLMTFFSVFDVPVFWPILLC 147          
BLAST of CF417574 vs. ExPASy Swiss-Prot
Match: RER1A_ARATH (Protein RER1A OS=Arabidopsis thaliana GN=RER1A PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 3.133e-43
Identity = 64/129 (49.61%), Postives = 82/129 (63.57%), Query Frame = 1
Query:    1 MEGPGADAASAVAPIAKWRSDFSRMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQGFYIVTYXXXXXXXXXXXXXXSPKIDPEFEAL-DGASLPTKGSDEFRPFIRRLPEFKFWYAIHKGFLCGF 384
            M+  G D+ S   P+ +   +  R++Q+YLD++TPH   RWIGTL  A IY LRVY +QGFYI+ Y              SP +DPE   + DG SLPT+GSDEF+PFIRRLPEFKFWY++ K F   F
Sbjct:    1 MDESGGDSGSVATPVQQRAHEAWRIYQHYLDKTTPHANYRWIGTLVVALIYCLRVYYIQGFYIIAYGLGIYLLNLLIGFLSPLVDPEAGGVSDGPSLPTRGSDEFKPFIRRLPEFKFWYSMTKAFCIAF 129          

HSP 2 Score: 61.2326 bits (147), Expect = 3.133e-43
Identity = 25/27 (92.59%), Postives = 27/27 (100.00%), Query Frame = 2
Query:  362 TKAFCVAFLMTFFSIFDVPVFWPILLC 442
            TKAFC+AFLMTFFS+FDVPVFWPILLC
Sbjct:  122 TKAFCIAFLMTFFSVFDVPVFWPILLC 148          
BLAST of CF417574 vs. ExPASy Swiss-Prot
Match: RER1C_ARATH (Protein RER1C OS=Arabidopsis thaliana GN=RER1C PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.397e-33
Identity = 55/123 (44.72%), Postives = 75/123 (60.98%), Query Frame = 1
Query:   16 ADAASAVAPIAKWRSDFSRMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQGFYIVTYXXXXXXXXXXXXXXSPKIDPEFEALDGASLPTKGSDEFRPFIRRLPEFKFWYAIHKGFLCGF 384
            +D++S    + +    FS+  Q+ LD++ PH L RWI  L    IY++RVY V+GFYI+TY              SP+ DPE     G SLPT+ SDE+RPF+RRLPEFKFW +I + F+ GF
Sbjct:   28 SDSSSPADAVNRLIHAFSQRQQHLLDKTVPHVLYRWIACLCVVLIYIVRVYFVEGFYIITYAIGIYLLNLIIAFLSPQEDPEASLTSGGSLPTRRSDEYRPFVRRLPEFKFWLSIIRAFIIGF 150          

HSP 2 Score: 46.9802 bits (110), Expect = 1.397e-33
Identity = 18/25 (72.00%), Postives = 22/25 (88.00%), Query Frame = 2
Query:  365 KAFCVAFLMTFFSIFDVPVFWPILL 439
            +AF + F+MTFF +FDVPVFWPILL
Sbjct:  144 RAFIIGFMMTFFEVFDVPVFWPILL 168          
BLAST of CF417574 vs. ExPASy Swiss-Prot
Match: RER1_BOVIN (Protein RER1 OS=Bos taurus GN=RER1 PE=2 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 2.969e-30
Identity = 54/104 (51.92%), Postives = 71/104 (68.27%), Query Frame = 1
Query:   70 RMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQGFYIVTYXXXXXXXXXXXXXXSPKIDPEF--EALDGASLPTKGSDEFRPFIRRLPEFKFWYAIHKGFL 375
            +++Q +LD+STPH   RW+ TL  + IY++RVY +QG+YIVTY              SPK+DP    ++ DG SLPTK ++EFRPFIRRLPEFKFW+A  KG L
Sbjct:   27 QIYQSWLDKSTPHTAVRWVVTLGLSFIYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATKGIL 130          

HSP 2 Score: 38.891 bits (89), Expect = 2.969e-30
Identity = 16/27 (59.26%), Postives = 20/27 (74.07%), Query Frame = 2
Query:  359 STKAFCVAFLMTFFSIFDVPVFWPILL 439
            +TK   VA + TFF  F+VPVFWPIL+
Sbjct:  125 ATKGILVAMVCTFFEAFNVPVFWPILV 151          
BLAST of CF417574 vs. ExPASy Swiss-Prot
Match: RER1_RAT (Protein RER1 OS=Rattus norvegicus GN=Rer1 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.554e-30
Identity = 53/113 (46.90%), Postives = 75/113 (66.37%), Query Frame = 1
Query:   43 IAKWRSDFSRMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQGFYIVTYXXXXXXXXXXXXXXSPKIDPEF--EALDGASLPTKGSDEFRPFIRRLPEFKFWYAIHKGFL 375
            + ++ S   +++Q +LD+STP+   RW+ TL  + +Y++RVY +QG+YIVTY              SPK+DP    ++ DG SLPTK ++EFRPFIRRLPEFKFW+A  KG L
Sbjct:   18 VYRFFSRLGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATKGIL 130          

HSP 2 Score: 39.2762 bits (90), Expect = 6.554e-30
Identity = 16/27 (59.26%), Postives = 20/27 (74.07%), Query Frame = 2
Query:  359 STKAFCVAFLMTFFSIFDVPVFWPILL 439
            +TK   VA + TFF  F+VPVFWPIL+
Sbjct:  125 ATKGILVAMICTFFEAFNVPVFWPILV 151          
BLAST of CF417574 vs. ExPASy Swiss-Prot
Match: RER1_MOUSE (Protein RER1 OS=Mus musculus GN=Rer1 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.554e-30
Identity = 53/113 (46.90%), Postives = 75/113 (66.37%), Query Frame = 1
Query:   43 IAKWRSDFSRMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQGFYIVTYXXXXXXXXXXXXXXSPKIDPEF--EALDGASLPTKGSDEFRPFIRRLPEFKFWYAIHKGFL 375
            + ++ S   +++Q +LD+STP+   RW+ TL  + +Y++RVY +QG+YIVTY              SPK+DP    ++ DG SLPTK ++EFRPFIRRLPEFKFW+A  KG L
Sbjct:   18 VYRFFSRLGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATKGIL 130          

HSP 2 Score: 39.2762 bits (90), Expect = 6.554e-30
Identity = 16/27 (59.26%), Postives = 20/27 (74.07%), Query Frame = 2
Query:  359 STKAFCVAFLMTFFSIFDVPVFWPILL 439
            +TK   VA + TFF  F+VPVFWPIL+
Sbjct:  125 ATKGILVAMICTFFEAFNVPVFWPILV 151          
BLAST of CF417574 vs. ExPASy Swiss-Prot
Match: RER1_PONAB (Protein RER1 OS=Pongo abelii GN=RER1 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.884e-29
Identity = 52/104 (50.00%), Postives = 71/104 (68.27%), Query Frame = 1
Query:   70 RMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQGFYIVTYXXXXXXXXXXXXXXSPKIDPEF--EALDGASLPTKGSDEFRPFIRRLPEFKFWYAIHKGFL 375
            +++Q +LD+STP+   RW+ TL  + +Y++RVY +QG+YIVTY              SPK+DP    ++ DG SLPTK ++EFRPFIRRLPEFKFW+A  KG L
Sbjct:   27 QIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATKGIL 130          

HSP 2 Score: 38.891 bits (89), Expect = 1.884e-29
Identity = 16/27 (59.26%), Postives = 20/27 (74.07%), Query Frame = 2
Query:  359 STKAFCVAFLMTFFSIFDVPVFWPILL 439
            +TK   VA + TFF  F+VPVFWPIL+
Sbjct:  125 ATKGILVAMVCTFFDAFNVPVFWPILV 151          
BLAST of CF417574 vs. ExPASy Swiss-Prot
Match: RER1_HUMAN (Protein RER1 OS=Homo sapiens GN=RER1 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.884e-29
Identity = 52/104 (50.00%), Postives = 71/104 (68.27%), Query Frame = 1
Query:   70 RMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQGFYIVTYXXXXXXXXXXXXXXSPKIDPEF--EALDGASLPTKGSDEFRPFIRRLPEFKFWYAIHKGFL 375
            +++Q +LD+STP+   RW+ TL  + +Y++RVY +QG+YIVTY              SPK+DP    ++ DG SLPTK ++EFRPFIRRLPEFKFW+A  KG L
Sbjct:   27 QIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATKGIL 130          

HSP 2 Score: 38.891 bits (89), Expect = 1.884e-29
Identity = 16/27 (59.26%), Postives = 20/27 (74.07%), Query Frame = 2
Query:  359 STKAFCVAFLMTFFSIFDVPVFWPILL 439
            +TK   VA + TFF  F+VPVFWPIL+
Sbjct:  125 ATKGILVAMVCTFFDAFNVPVFWPILV 151          
BLAST of CF417574 vs. ExPASy Swiss-Prot
Match: RER1_CHICK (Protein RER1 OS=Gallus gallus GN=RER1 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 9.179e-29
Identity = 52/104 (50.00%), Postives = 71/104 (68.27%), Query Frame = 1
Query:   70 RMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQGFYIVTYXXXXXXXXXXXXXXSPKIDPEF--EALDGASLPTKGSDEFRPFIRRLPEFKFWYAIHKGFL 375
            +++Q +LD+STP+   RWI TL  + IY++RVY +QG+YIVTY              SPK+DP    ++ DG SLPT+ ++EFRPFIRRLPEFKFW++  KG L
Sbjct:   27 QIYQSWLDKSTPYTAVRWIVTLGLSFIYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTRQNEEFRPFIRRLPEFKFWHSATKGIL 130          

HSP 2 Score: 38.1206 bits (87), Expect = 9.179e-29
Identity = 16/27 (59.26%), Postives = 19/27 (70.37%), Query Frame = 2
Query:  359 STKAFCVAFLMTFFSIFDVPVFWPILL 439
            +TK   VA   TFF  F+VPVFWPIL+
Sbjct:  125 ATKGILVAMACTFFEAFNVPVFWPILV 151          
BLAST of CF417574 vs. ExPASy Swiss-Prot
Match: RER1_CAEEL (Protein RER1 homolog OS=Caenorhabditis elegans GN=rer-1 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.587e-24
Identity = 49/103 (47.57%), Postives = 61/103 (59.22%), Query Frame = 1
Query:   76 FQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQGFYIVTYXXXXXXXXXXXXXXSPKIDP--EFE-ALDGASLPTKGSDEFRPFIRRLPEFKFWYAIHKGFL 375
            +QYYLDR TPH   RW+  L +   +  R+  +QGFYIV Y              +P IDP  EFE   DG  LP+K +DEFRPF+RRLPEFKFW++  K  L
Sbjct:   23 YQYYLDRLTPHTAFRWVIALISLVFFASRIILLQGFYIVAYAVGIYYLNLFLLFLTPSIDPALEFEDEDDGPVLPSKTNDEFRPFMRRLPEFKFWHSFMKATL 125          

HSP 2 Score: 38.5058 bits (88), Expect = 1.587e-24
Identity = 16/25 (64.00%), Postives = 18/25 (72.00%), Query Frame = 2
Query:  365 KAFCVAFLMTFFSIFDVPVFWPILL 439
            KA  +A   TFF  FDVPVFWPIL+
Sbjct:  122 KATLIAITCTFFEFFDVPVFWPILV 146          
The following BLAST results are available for this feature:
BLAST of CF417574 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
RER1B_ARATH1.446e-4652.34Protein RER1B OS=Arabidopsis thaliana GN=RER1B PE=... [more]
RER1A_ARATH3.133e-4349.61Protein RER1A OS=Arabidopsis thaliana GN=RER1A PE=... [more]
RER1C_ARATH1.397e-3344.72Protein RER1C OS=Arabidopsis thaliana GN=RER1C PE=... [more]
RER1_BOVIN2.969e-3051.92Protein RER1 OS=Bos taurus GN=RER1 PE=2 SV=2[more]
RER1_RAT6.554e-3046.90Protein RER1 OS=Rattus norvegicus GN=Rer1 PE=2 SV=... [more]
RER1_MOUSE6.554e-3046.90Protein RER1 OS=Mus musculus GN=Rer1 PE=1 SV=1[more]
RER1_PONAB1.884e-2950.00Protein RER1 OS=Pongo abelii GN=RER1 PE=2 SV=1[more]
RER1_HUMAN1.884e-2950.00Protein RER1 OS=Homo sapiens GN=RER1 PE=1 SV=1[more]
RER1_CHICK9.179e-2950.00Protein RER1 OS=Gallus gallus GN=RER1 PE=2 SV=1[more]
RER1_CAEEL1.587e-2447.57Protein RER1 homolog OS=Caenorhabditis elegans GN=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-504 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-006_G06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417574 ID=CF417574; Name=CF417574; organism=Citrus sinensis; type=EST; length=453bp
ATGGAAGGACCAGGGGCTGATGCTGCTTCTGCGGTGGCCCCCATTGCAAA
GTGGAGAAGTGATTTCTCGAGGATGTTTCAGTACTATCTGGATCGATCAA
CCCCGCATCCATTGCAGAGGTGGATTGGAACTCTTGCCGCTGCGTCGATT
TACTTGTTGCGTGTTTACTGTGTTCAAGGGTTTTACATTGTCACATATGG
CTTAGGAATCTATATTCTGAATTTGTTGATTGGATTCCTATCGCCGAAGA
TTGATCCGGAGTTTGAAGCCTTGGATGGAGCTTCATTGCCAACTAAAGGG
TCTGATGAGTTTAGGCCATTCATTCGCCGTCTTCCTGAGTTTAAGTTCTG
GTATGCCATCCACAAAGGCTTTCTGTGTGGCTTTCCTTATGACCTTCTTT
TCTATATTTGATGTTCCTGTCTTTTGGCCCATATTGCTGTGCCTATTGGG
ATT
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