CF417578
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_HELAN (40S ribosomal protein S3a OS=Helianthus annuus GN=RPS3A PE=2 SV=2) HSP 1 Score: 182.57 bits (462), Expect = 1.467e-71 Identity = 94/114 (82.46%), Postives = 100/114 (87.72%), Query Frame = 3 Query: 285 NQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPXDXPMPEAXTEVIGA 626 NQVKRTCYAQ+ QI QIRRKMREIMV A +CDLK LV+ FI E IGREIEKATSSIYPLQNVFIRKVKILKAPKFD+GKLMEVHGDYSEDVGVK+DRP + PEA TEVIGA Sbjct: 148 NQVKRTCYAQSSQIKQIRRKMREIMVTQAQTCDLKELVQKFIPESIGREIEKATSSIYPLQNVFIRKVKILKAPKFDIGKLMEVHGDYSEDVGVKLDRPAEEAAPEA-TEVIGA 260 HSP 2 Score: 96.6709 bits (239), Expect = 1.467e-71 Identity = 46/61 (75.41%), Postives = 51/61 (83.61%), Query Frame = 2 Query: 89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271 KI L AE V GK VLT FWGM+ TTDKL SLV+ W +LIEA+VDVKTTDNFTLR+FCIGFT Sbjct: 83 KIRLRAEDVQGKNVLTNFWGMDVTTDKLRSLVKKWQSLIEAHVDVKTTDNFTLRMFCIGFT 143 HSP 3 Score: 31.9574 bits (71), Expect = 1.467e-71 Identity = 15/28 (53.57%), Postives = 20/28 (71.43%), Query Frame = 1 Query: 1 KIASEGLKHXVFESITSVIFSTEEEHAY 84 KIASEGLKH VFE ++ +E+H+Y Sbjct: 55 KIASEGLKHRVFE-VSLADLQNDEDHSY 81
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A1_VITVI (40S ribosomal protein S3a-1 OS=Vitis vinifera GN=GSVIVT00020038001 PE=3 SV=1) HSP 1 Score: 179.104 bits (453), Expect = 1.581e-70 Identity = 90/114 (78.95%), Postives = 97/114 (85.09%), Query Frame = 3 Query: 285 NQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPXDXPMPEAXTEVIGA 626 NQ K+TCYAQ+ QI QIRRKMREIM A SCDLK LV+ FI E IGREIEKATSSIYPLQNV+IRKVKILKAPKFDLGKLMEVHGDYSEDVG K++RP D P+ E TEVIGA Sbjct: 148 NQNKKTCYAQSSQIRQIRRKMREIMTNMATSCDLKELVKKFIPESIGREIEKATSSIYPLQNVYIRKVKILKAPKFDLGKLMEVHGDYSEDVGTKLERPADEPVAEGVTEVIGA 261 HSP 2 Score: 98.2117 bits (243), Expect = 1.581e-70 Identity = 47/61 (77.05%), Postives = 51/61 (83.61%), Query Frame = 2 Query: 89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271 KI L AE V G+ VLT FWGM+FTTDKL SLVR W TLIEA+VDVKTTDN+TLRLFCI FT Sbjct: 83 KIRLRAEDVQGRNVLTNFWGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDNYTLRLFCIAFT 143 HSP 3 Score: 30.4166 bits (67), Expect = 1.581e-70 Identity = 16/28 (57.14%), Postives = 19/28 (67.86%), Query Frame = 1 Query: 1 KIASEGLKHXVFESITSVIFSTEEEHAY 84 KIASEGLKH VFE I+ +E+ AY Sbjct: 55 KIASEGLKHRVFE-ISLADLQADEDQAY 81
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_CICAR (40S ribosomal protein S3a OS=Cicer arietinum PE=2 SV=1) HSP 1 Score: 177.178 bits (448), Expect = 2.219e-69 Identity = 89/117 (76.07%), Postives = 97/117 (82.91%), Query Frame = 3 Query: 276 RLPNQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPXDXPMPEAXTEVIGA 626 R NQVKRTCYAQ+ QI QIRRKMREIMV A SCDLK LV FI E+IG+EIEKATSSIYPLQNVFIRKVKILK+PKFDLGKLMEVHGDYSEDVG KV+ P D + E E++GA Sbjct: 145 RRSNQVKRTCYAQSSQIRQIRRKMREIMVNQATSCDLKELVRKFIPEMIGKEIEKATSSIYPLQNVFIRKVKILKSPKFDLGKLMEVHGDYSEDVGTKVESPADETVVEGTPEIVGA 261 HSP 2 Score: 98.2117 bits (243), Expect = 2.219e-69 Identity = 48/65 (73.85%), Postives = 53/65 (81.54%), Query Frame = 2 Query: 89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFTXETS 283 KI L AE V GK VLT F+GM+FTTDKL SLVR W TLIEA+VDVKTTDN+TLR+FCIGFT S Sbjct: 83 KIRLRAEDVQGKNVLTNFYGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDNYTLRMFCIGFTKRRS 147 HSP 3 Score: 28.4906 bits (62), Expect = 2.219e-69 Identity = 15/28 (53.57%), Postives = 20/28 (71.43%), Query Frame = 1 Query: 1 KIASEGLKHXVFESITSVIFSTEEEHAY 84 KIASEGLKH VFE I+ +E++A+ Sbjct: 55 KIASEGLKHRVFE-ISLADLQGDEDNAF 81
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A2_ARATH (40S ribosomal protein S3a-2 OS=Arabidopsis thaliana GN=RPS3AB PE=2 SV=3) HSP 1 Score: 177.563 bits (449), Expect = 8.308e-69 Identity = 93/118 (78.81%), Postives = 97/118 (82.20%), Query Frame = 3 Query: 276 RLPNQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY-SEDVGVKVDRPXDXPMPEAXTEVIGA 626 R NQVKRTCYAQ+ QI QIRRKM EIMV A+SCDLK LV FI E IGREIEKAT IYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY +EDVGVKVDRP D M E TE+IGA Sbjct: 145 RRANQVKRTCYAQSSQIRQIRRKMSEIMVKEASSCDLKELVAKFIPEAIGREIEKATQGIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYTAEDVGVKVDRPADETMVEEPTEIIGA 262 HSP 2 Score: 93.9745 bits (232), Expect = 8.308e-69 Identity = 44/61 (72.13%), Postives = 50/61 (81.97%), Query Frame = 2 Query: 89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271 KI L AE V G+ VLT FWGM+FTTDKL SLV+ W TLIEA+VDVKTTD +TLR+FCI FT Sbjct: 83 KIRLRAEDVQGRNVLTQFWGMDFTTDKLRSLVKKWQTLIEAHVDVKTTDGYTLRMFCIAFT 143 HSP 3 Score: 30.4166 bits (67), Expect = 8.308e-69 Identity = 15/28 (53.57%), Postives = 20/28 (71.43%), Query Frame = 1 Query: 1 KIASEGLKHXVFESITSVIFSTEEEHAY 84 KIASEGLKH VFE ++ +E++AY Sbjct: 55 KIASEGLKHRVFE-VSLADLQNDEDNAY 81
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A1_ARATH (40S ribosomal protein S3a-1 OS=Arabidopsis thaliana GN=RPS3AA PE=1 SV=3) HSP 1 Score: 176.022 bits (445), Expect = 8.947e-68 Identity = 92/118 (77.97%), Postives = 97/118 (82.20%), Query Frame = 3 Query: 276 RLPNQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKVDRPXDXPMPEAXTEVIGA 626 R NQVKRTCYAQ+ QI QIRRKMR+IMV A+SCDLK LV FI E IGREIEKAT IYPLQNVFIRKVKILKAPKFDLGKLM+VHGDYS EDVGVKVDRP D E TE+IGA Sbjct: 145 RRANQVKRTCYAQSSQIRQIRRKMRDIMVREASSCDLKDLVAKFIPEAIGREIEKATQGIYPLQNVFIRKVKILKAPKFDLGKLMDVHGDYSAEDVGVKVDRPADEMAVEEPTEIIGA 262 HSP 2 Score: 92.8189 bits (229), Expect = 8.947e-68 Identity = 44/61 (72.13%), Postives = 50/61 (81.97%), Query Frame = 2 Query: 89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271 KI L AE V G+ VL FWGM+FTTDKL SLV+ W TLIEA+VDVKTTD++TLRLFCI FT Sbjct: 83 KIRLRAEDVQGRNVLCQFWGMDFTTDKLRSLVKKWQTLIEAHVDVKTTDSYTLRLFCIAFT 143 HSP 3 Score: 29.6462 bits (65), Expect = 8.947e-68 Identity = 15/28 (53.57%), Postives = 20/28 (71.43%), Query Frame = 1 Query: 1 KIASEGLKHXVFESITSVIFSTEEEHAY 84 KIASEGLKH VFE ++ +E++AY Sbjct: 55 KIASEGLKHRVFE-VSLADLQGDEDNAY 81
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_DAUCA (40S ribosomal protein S3a OS=Daucus carota GN=cyc07 PE=2 SV=1) HSP 1 Score: 172.555 bits (436), Expect = 3.351e-67 Identity = 88/114 (77.19%), Postives = 96/114 (84.21%), Query Frame = 3 Query: 285 NQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPXDXPMPEAXTEVIGA 626 NQ KRTCYAQ+ QI QIRRKM EIM A+SCDLK LV FI E IGREIEKATSSI+PLQNVFIRKVKILKAPKFD+GKLMEVHGDYSEDVGVK++RP + M E TEV+GA Sbjct: 148 NQQKRTCYAQSSQIRQIRRKMVEIMRNQASSCDLKELVAKFIPESIGREIEKATSSIFPLQNVFIRKVKILKAPKFDIGKLMEVHGDYSEDVGVKLERPIEETMVEGETEVVGA 261 HSP 2 Score: 95.5153 bits (236), Expect = 3.351e-67 Identity = 46/61 (75.41%), Postives = 52/61 (85.25%), Query Frame = 2 Query: 89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271 KI L AE V GK VLT F+GM+FTTDKL SLVR W TLIEA+VDVKTTD++TLR+FCIGFT Sbjct: 83 KIRLRAEDVQGKNVLTNFYGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDSYTLRMFCIGFT 143 HSP 3 Score: 28.4906 bits (62), Expect = 3.351e-67 Identity = 15/28 (53.57%), Postives = 18/28 (64.29%), Query Frame = 1 Query: 1 KIASEGLKHXVFESITSVIFSTEEEHAY 84 KIASEGLKH VFE + +E+ AY Sbjct: 55 KIASEGLKHRVFE-VCLADLQGDEDQAY 81
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_TOBAC (40S ribosomal protein S3a OS=Nicotiana tabacum GN=cyc07 PE=2 SV=1) HSP 1 Score: 172.555 bits (436), Expect = 7.399e-67 Identity = 88/115 (76.52%), Postives = 96/115 (83.48%), Query Frame = 3 Query: 282 PNQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPXDXPMPEAXTEVIGA 626 PNQ KRTCYAQ+ QI QIRRKM EIM A+SCDLK LV FI E IGREIEKATSSI+PLQNV+IRKVKILKAPKFD+GKLMEVHGDYSEDVGVK+DRP D + EA E+ GA Sbjct: 147 PNQQKRTCYAQSSQIRQIRRKMVEIMRNQASSCDLKELVAKFIPESIGREIEKATSSIFPLQNVYIRKVKILKAPKFDIGKLMEVHGDYSEDVGVKLDRPADETVAEAEPEIPGA 261 HSP 2 Score: 95.5153 bits (236), Expect = 7.399e-67 Identity = 45/61 (73.77%), Postives = 51/61 (83.61%), Query Frame = 2 Query: 89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271 KI L AE V GK VLT FWGM+FTTDKL SLV+ W TLIEA+VDVKTTD++TLR+FCI FT Sbjct: 83 KIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVKKWQTLIEAHVDVKTTDSYTLRMFCIAFT 143 HSP 3 Score: 27.335 bits (59), Expect = 7.399e-67 Identity = 12/13 (92.31%), Postives = 12/13 (92.31%), Query Frame = 1 Query: 1 KIASEGLKHXVFE 39 KIASEGLKH VFE Sbjct: 55 KIASEGLKHRVFE 67
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_CATRO (40S ribosomal protein S3a OS=Catharanthus roseus GN=RPS3A PE=2 SV=4) HSP 1 Score: 169.474 bits (428), Expect = 9.635e-67 Identity = 90/115 (78.26%), Postives = 97/115 (84.35%), Query Frame = 3 Query: 285 NQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSE-DVGVKVDRPXDXPMPEAXTEVIGA 626 NQ KRTCYAQ+ QI QIRRKMREIMV A SCDLK LV+ FI E IGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY+E D+G K+DRP + + E TEVIGA Sbjct: 148 NQQKRTCYAQSSQIRQIRRKMREIMVNQAQSCDLKDLVQKFIPESIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYNEDDIGTKLDRPAEEAVAE-PTEVIGA 261 HSP 2 Score: 97.0561 bits (240), Expect = 9.635e-67 Identity = 45/61 (73.77%), Postives = 52/61 (85.25%), Query Frame = 2 Query: 89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271 KI L AE + GK VLT FWGM+FTTDKL SLVR W +LIEA+VDVKTTD++TLR+FCIGFT Sbjct: 83 KIRLRAEDIQGKNVLTNFWGMDFTTDKLRSLVRKWQSLIEAHVDVKTTDSYTLRMFCIGFT 143 HSP 3 Score: 28.4906 bits (62), Expect = 9.635e-67 Identity = 14/28 (50.00%), Postives = 20/28 (71.43%), Query Frame = 1 Query: 1 KIASEGLKHXVFESITSVIFSTEEEHAY 84 KIASEGL+H VFE I+ +E+H++ Sbjct: 55 KIASEGLEHRVFE-ISLADLQGDEDHSF 81
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_ORYSJ (40S ribosomal protein S3a OS=Oryza sativa subsp. japonica GN=RPS3A PE=2 SV=2) HSP 1 Score: 162.925 bits (411), Expect = 6.578e-65 Identity = 82/105 (78.10%), Postives = 90/105 (85.71%), Query Frame = 3 Query: 276 RLPNQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKVDRPXD 587 R PNQVKRTCYAQ QI QIRRKM EIM A+SCDLK LV FI EVIG+EIEKATSSI+PLQNVF+RKVKILKAPKFDLGKLMEVHGDY+ ED+G K+DRP + Sbjct: 145 RRPNQVKRTCYAQASQIRQIRRKMVEIMANQASSCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVFVRKVKILKAPKFDLGKLMEVHGDYAKEDIGTKLDRPAE 249 HSP 2 Score: 95.9005 bits (237), Expect = 6.578e-65 Identity = 46/61 (75.41%), Postives = 50/61 (81.97%), Query Frame = 2 Query: 89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271 KI L AE V GK VLT FWGM+FTTDKL SLV+ W TLIEA+VDVKTTD + LRLFCIGFT Sbjct: 83 KIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDGYMLRLFCIGFT 143 HSP 3 Score: 30.0314 bits (66), Expect = 6.578e-65 Identity = 15/28 (53.57%), Postives = 19/28 (67.86%), Query Frame = 1 Query: 1 KIASEGLKHXVFESITSVIFSTEEEHAY 84 KIASEGLKH VFE ++ +E+ AY Sbjct: 55 KIASEGLKHRVFE-VSLADLQNDEDQAY 81
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_BRARA (40S ribosomal protein S3a OS=Brassica rapa GN=RPS3A PE=2 SV=2) HSP 1 Score: 160.614 bits (405), Expect = 3.205e-64 Identity = 88/119 (73.95%), Postives = 96/119 (80.67%), Query Frame = 3 Query: 276 RLPNQVKRTCYAQTXQITQIRRKMREIMVAX-AASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY-SEDVGVKVDRPXDXPMPEAXTEVIGA 626 R NQVKRTCYAQ+ QI QIR KMREIM+ A+SCDLK LV FI E IG++IEKAT IYPLQNVFIRKVKILKAPKFDL KLMEVHGDY +EDVGVKVDRP D + E TE+IGA Sbjct: 145 RRANQVKRTCYAQSSQIRQIRSKMREIMIKEEASSCDLKELVAKFIPESIGKDIEKATQGIYPLQNVFIRKVKILKAPKFDLRKLMEVHGDYTAEDVGVKVDRPAD-EVVEEPTEIIGA 262 HSP 2 Score: 95.9005 bits (237), Expect = 3.205e-64 Identity = 45/61 (73.77%), Postives = 51/61 (83.61%), Query Frame = 2 Query: 89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271 KI L AE V G+ VLT FWGM+FTTDKL SLV+ W TLIE++VDVKTTDN+TLRLFCI FT Sbjct: 83 KIRLRAEDVQGRNVLTQFWGMDFTTDKLRSLVKKWQTLIESHVDVKTTDNYTLRLFCIAFT 143 HSP 3 Score: 30.0314 bits (66), Expect = 3.205e-64 Identity = 15/28 (53.57%), Postives = 20/28 (71.43%), Query Frame = 1 Query: 1 KIASEGLKHXVFESITSVIFSTEEEHAY 84 KIASEGLKH VFE ++ + +E+ AY Sbjct: 55 KIASEGLKHRVFE-VSLADLNKDEDQAY 81 The following BLAST results are available for this feature:
BLAST of CF417578 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 158
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417578 ID=CF417578; Name=CF417578; organism=Citrus sinensis; type=EST; length=652bpback to top |