CF417579

Overview
NameCF417579
Unique NameCF417579
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length602
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10244 contig Csv1_Contig10244:195..796. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417579 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 374.4 bits (960), Expect = 2.416e-103
Identity = 176/200 (88.00%), Postives = 191/200 (95.50%), Query Frame = 1
Query:    1 SSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAE 600
            S+T ++ATPFLGQ++  AN L+DVV MG+A++TM N+LWYGPDRVKYLGPFSAQTPSYL GEFPGDYGWDTAGLSADPEAFA+NRALEVIHGRWAMLGALGCI PEVLEKW++VDFKEPVWFKAG+QIFS+GGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDP TFAE
Sbjct:   10 STTVVKATPFLGQTKN-ANPLRDVVAMGSARFTMSNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPTTFAE 208          
BLAST of CF417579 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 352.058 bits (902), Expect = 1.284e-96
Identity = 168/195 (86.15%), Postives = 180/195 (92.31%), Query Frame = 1
Query:   22 TPFL-GQSRT-TANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAE 600
            TPFL GQ R  +A+ L+D+    N + TMGN+LWYGPDRVKYLGPFSAQTPSYL GEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGC+ PEVL+KW+ V+FKEPVWFKAG+QIFSEGGLDYLGNPNLVHAQSILAVLGFQV+LMGLVEGFRINGL GVGEGNDLYPGGQYFDPLGLADDPVTFAE
Sbjct:   17 TPFLSGQGRAASASPLRDIAAATNGRITMGNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAE 211          
BLAST of CF417579 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 261.151 bits (666), Expect = 2.981e-69
Identity = 137/202 (67.82%), Postives = 151/202 (74.75%), Query Frame = 1
Query:   16 RATPFLGQSRTTANALKDV------VPMGNAKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAE 600
            + T FLG +      ++ V      + M     +    +WYGPDR KYLGPFS QTPSYLTGEFPGDYGWDTAGLSADPE FARNR LEVIH RWAMLGALGC+ PE+L K   V F E VWFKAGAQIFSEGGLDYLGNPNLVHAQSILA+   QVVLMG VEG+R+ G P +GEG D +YPGG  FDPLGLADDP TFAE
Sbjct:    8 QTTSFLGTAPRRDELVRRVGDSGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSK-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGP-LGEGLDKVYPGGA-FDPLGLADDPDTFAE 206          
BLAST of CF417579 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 261.151 bits (666), Expect = 2.981e-69
Identity = 137/202 (67.82%), Postives = 151/202 (74.75%), Query Frame = 1
Query:   16 RATPFLGQSRTTANALKDV------VPMGNAKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAE 600
            + T FLG +      ++ V      + M     +    +WYGPDR KYLGPFS QTPSYLTGEFPGDYGWDTAGLSADPE FARNR LEVIH RWAMLGALGC+ PE+L K   V F E VWFKAGAQIFSEGGLDYLGNPNLVHAQSILA+   QVVLMG VEG+R+ G P +GEG D +YPGG  FDPLGLADDP TFAE
Sbjct:    8 QTTSFLGTAPRRDELVRRVGDSGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSK-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGP-LGEGLDKVYPGGA-FDPLGLADDPDTFAE 206          
BLAST of CF417579 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 256.529 bits (654), Expect = 7.342e-68
Identity = 135/210 (64.29%), Postives = 157/210 (74.76%), Query Frame = 1
Query:    1 SSTSLRATPFLGQS--RTTANALKDVVPMGNAKYTMGN-------ELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAE 600
            ++ +++ + F+GQ+  ++    ++ V   G  + TM          +WYG DR KYLGPFS QTPSYLTGEFPGDYGWDTAGLSADPE FARNR LEVIH RWAMLGALGC+ PE+L K   V F E VWFKAG+QIFSEGGLDYLGNPNLVHAQSILA+   QVVLMG VEG+R+ G P +GEG D +YPGG  FDPLGLADDP  FAE
Sbjct:    2 ATCAIQQSAFVGQAVGKSQNEFIRKVGNFGEGRITMRRTVKSAPQSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSK-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGP-LGEGLDKIYPGGA-FDPLGLADDPEAFAE 208          
BLAST of CF417579 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 256.529 bits (654), Expect = 7.342e-68
Identity = 132/181 (72.93%), Postives = 144/181 (79.56%), Query Frame = 1
Query:   82 GNAKYTMGN-------ELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAE 600
            G A++TM          +WYGPDR KYLGPFS Q PSYLTGEFPGDYGWDTAGLSADPE FARNR LEVIH RWAMLGALGC  PE+LEK   V F E VWFKAG+QIF+EGGLDYLGNPNL+HAQSILA+   QVVLMG VEG+R+ G P +GEG D LYPGG  FDPLGLADDP +FAE
Sbjct:   31 GQARFTMRRTVKSAPESIWYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEK-NGVKFGEAVWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRVGGGP-LGEGLDPLYPGGA-FDPLGLADDPDSFAE 208          
BLAST of CF417579 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 9.589e-68
Identity = 135/209 (64.59%), Postives = 159/209 (76.08%), Query Frame = 1
Query:    1 SSTSLRATPFLGQSRTTA-NALKDVVPMGNAKYTMGN-------ELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAE 600
            ++++++++ F GQ+     + L   V + + +++M          +WYG DR K+LGPFS QTPSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGCI PE+L K   V F E VWFKAGAQIFSEGGLDYLGNPNLVHAQSILA+   QVVLMGL+EG+R+ G P +GEG D LYPGG  FDPLGLADDP  FAE
Sbjct:    2 AASAIQSSAFAGQTALKQRDELVRKVGVSDGRFSMRRTVKAVPQSIWYGADRPKFLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLSK-NGVQFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVVLMGLIEGYRVGGGP-LGEGLDPLYPGGA-FDPLGLADDPEAFAE 207          
BLAST of CF417579 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 1.252e-67
Identity = 133/210 (63.33%), Postives = 157/210 (74.76%), Query Frame = 1
Query:    1 SSTSLRATPFLGQS--RTTANALKDVVPMGNAKYTMGN-------ELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAE 600
            ++++++ + F GQ+  ++    ++ +   G  + TM          +WYG DR KYLGPFS QTPSYLTGEFPGDYGWDTAGLSADPE FARNR LEVIH RWAMLGALGC+ PE+L K   V F E VWFKAG+QIFSEGGLDYLGNPNL+HAQSILA+   QVVLMG VEG+R+ G P +GEG D +YPGG  FDPLGLADDP  FAE
Sbjct:    2 ATSAIQQSAFAGQTALKSQNELVRKIGSFGGGRATMRRTVKSAPQSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSK-NGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAAQVVLMGFVEGYRVGGGP-LGEGLDKIYPGGA-FDPLGLADDPEAFAE 208          
BLAST of CF417579 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 2.136e-67
Identity = 128/164 (78.05%), Postives = 138/164 (84.15%), Query Frame = 1
Query:  112 LWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAE 600
            +WYG DR KYLGPFS QTPSYLTGEFPGDYGWDTAGLSADPE FARNR LEVIH RWAMLGALGC+ PE+L K   V F E VWFKAG+QIFSEGGLDYLGNPNL+HAQSILAV   QVVLMGL+EG+R+ G P +GEG D +YPGG  FDPLGLADDP  FAE
Sbjct:   48 IWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSK-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWASQVVLMGLIEGYRVGGGP-LGEGLDKIYPGGA-FDPLGLADDPEAFAE 208          
BLAST of CF417579 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 3.644e-67
Identity = 135/205 (65.85%), Postives = 150/205 (73.17%), Query Frame = 1
Query:    1 SSTSLRATPF----LGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAE 600
            SST++  TP      G+ R T         +G  K       WYGPDRVKYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L +   V F E VWFKAG+QIFSEGGLDYLGNP+L+HAQSILA+   QVVLMG VEG+RI G P +GE  D LYPGG  FDPLGLADDP  FAE
Sbjct:    9 SSTAMAGTPIKVGSFGEGRITMRKT-----VGKPKVAASGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGP-LGEVVDPLYPGGS-FDPLGLADDPEAFAE 205          
The following BLAST results are available for this feature:
BLAST of CF417579 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
CB23_SOLLC2.416e-10388.00Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB23_HORVU1.284e-9686.15Chlorophyll a-b binding protein of LHCII type III,... [more]
CB23_ORYSJ2.981e-6967.82Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI2.981e-6967.82Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB24_SOLLC7.342e-6864.29Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB215_PEA7.342e-6872.93Chlorophyll a-b binding protein 215, chloroplastic... [more]
CB21_LEMGI9.589e-6864.59Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB26_PETSP1.252e-6763.33Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB23_TOBAC2.136e-6778.05Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB21_MAIZE3.644e-6765.85Chlorophyll a-b binding protein 1, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-509 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-006_G11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417579 ID=CF417579; Name=CF417579; organism=Citrus sinensis; type=EST; length=602bp
TCTAGCACTTCTCTTAGGGCAACCCCATTTCTTGGCCAGAGTAGGACAAC
TGCTAACGCTCTAAAAGATGTTGTTCCGATGGGGAATGCCAAGTACACAA
TGGGAAATGAACTGTGGTATGGGCCAGACAGGGTGAAGTACTTGGGACCC
TTTTCAGCACAGACTCCATCATACTTGACTGGAGAGTTTCCAGGTGACTA
TGGATGGGACACTGCTGGTTTGTCTGCTGATCCCGAGGCCTTTGCCAGGA
ACAGGGCTCTTGAGGTGATCCATGGCAGGTGGGCTATGCTTGGAGCACTA
GGCTGCATCACCCCTGAAGTTCTCGAGAAATGGCTTAGAGTAGACTTCAA
GGAACCGGTTTGGTTCAAAGCTGGAGCTCAGATTTTCTCAGAAGGTGGCC
TTGACTACTTGGGAAACCCCAACCTTGTTCATGCTCAAAGCATTCTGGCT
GTCCTGGGATTCCAGGTTGTCCTCATGGGGCTCGTTGAGGGTTTCCGTAT
CAATGGCCTCCCTGGTGTCGGAGAAGGAAACGACCTCTACCCTGGTGGCC
AATATTTTGATCCCCTTGGCCTTGCTGATGATCCTGTTACGTTTGCTGAA
CT
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