CF417580

Overview
NameCF417580
Unique NameCF417580
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length413
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11002 contig Csv1_Contig11002:298..703. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF417580 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 3.443e-48
Identity = 95/131 (72.52%), Postives = 103/131 (78.63%), Query Frame = 1 
Query:    1 GSLPGDYGFXPLGLGKGPSIPEMGTEKXN*STGRWAMAAVVGIFVGQAWEWGFHGFEAGADPGXIAPFSFGSLLGTQLLLMGWVEXKRWVDFFNPESXXGEWATPWSRTAENFANATGEQRYLGGKFFGSL 393
            GSLPGDYGF PLGLGK P+  +   E      GRWAMAAV+GIFVGQAW  G   FEAGADPG IAPFSFG+LLGTQL+LMGWVE KRWVDFF+P+S   EWATPWS+TAENFAN TGEQ Y GGKFF  L
Sbjct:   73 GSLPGDYGFDPLGLGKDPAFLKWYREAEL-IHGRWAMAAVLGIFVGQAWS-GIPWFEAGADPGAIAPFSFGTLLGTQLILMGWVESKRWVDFFDPDSQSVEWATPWSKTAENFANFTGEQGYPGGKFFDPL 201
[Close]
BLAST of CF417580 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 1.709e-47
Identity = 93/131 (70.99%), Postives = 103/131 (78.63%), Query Frame = 1 
Query:    1 GSLPGDYGFXPLGLGKGPSIPEMGTEKXN*STGRWAMAAVVGIFVGQAWEWGFHGFEAGADPGXIAPFSFGSLLGTQLLLMGWVEXKRWVDFFNPESXXGEWATPWSRTAENFANATGEQRYLGGKFFGSL 393
            GSLPGD+GF PLGLGK P+  +   E      GRWAM AV+GIFVGQAW  G   FEAGADPG +APFSFG+LLGTQLLLMGWVE KRWVDFF+P+S   EWATPWSRTAENF+N+TGEQ Y GGKFF  L
Sbjct:   78 GSLPGDFGFDPLGLGKDPAFLKWYREAEL-IHGRWAMLAVLGIFVGQAWT-GIPWFEAGADPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWSRTAENFSNSTGEQGYPGGKFFDPL 206
[Close]
BLAST of CF417580 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 8.480e-47
Identity = 94/131 (71.76%), Postives = 102/131 (77.86%), Query Frame = 1 
Query:    1 GSLPGDYGFXPLGLGKGPSIPEMGTEKXN*STGRWAMAAVVGIFVGQAWEWGFHGFEAGADPGXIAPFSFGSLLGTQLLLMGWVEXKRWVDFFNPESXXGEWATPWSRTAENFANATGEQRYLGGKFFGSL 393
            GSLPGD+GF PLGLGK P+  +   E      GRWAMAAV+GIFVGQAW  G   FEAGADPG IAPFSFGSLLGTQLLLMGWVE KRWVDFF+ +S   +WATPWS+TAENFAN TGEQ Y GGKFF  L
Sbjct:   73 GSLPGDFGFDPLGLGKDPAFLKWYREAEL-IHGRWAMAAVLGIFVGQAWS-GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFDNDSQSIDWATPWSKTAENFANFTGEQGYPGGKFFDPL 201
The following BLAST results are available for this feature:
BLAST of CF417580 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
CB4A_SOLLC3.443e-4872.52Chlorophyll a-b binding protein CP24 10A, chloropl... [more]
CB4_SPIOL1.709e-4770.99Chlorophyll a-b binding protein CP24, chloroplasti... [more]
CB4B_SOLLC8.480e-4771.76Chlorophyll a-b binding protein CP24 10B, chloropl... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-510 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-006_H01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417580 ID=CF417580; Name=CF417580; organism=Citrus sinensis; type=EST; length=413bp
GGCTCTCTCCCAGGTGACTACGGATTCNACCCACTTGGGCTTGGGAAAGG
ACCCAGCATTCCTGAAATGGGTACAGAGAAACANAACTGATCCACGGGAC
GATGGGCAATGGCTGCAGTTGTTGGGATATTCGTCGGACAGGCGTGGGAG
TGGGGATTCCATGGGTTCGAGGCTGGAGCAGATCCTGGANCCATAGCACC
CTTCTCCTTCGGCTCACTCCTGGGAACCCAGCTTCTCCTTATGGGTTGGG
TTGAGAGNAAGCGGTGGGTTGATTTTTTCAATCCTGAATCTCNANCAGGT
GAATGGGCAACACCTTGGTCAAGAACTGCTGAAAACTTTGCCAATGCGAC
TGGTGAACAACGCTACCTTGGTGGAAAGTTTTTTGGATCCCTTTATGTTT
GGCTGGAACAATT
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