CF417583

Overview
NameCF417583
Unique NameCF417583
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length217
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9540 contig Csv1_Contig9540:70..282. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417583 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.648e-18
Identity = 46/64 (71.88%), Postives = 54/64 (84.38%), Query Frame = 3
Query:   33 MATSTMALSSS-FVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFS 215
            MATSTMALSSS F GKAV L+PS +E++  GR++MRKT +K+   SSGSPWYGPDRVKYLGPFS
Sbjct:    1 MATSTMALSSSTFAGKAVKLSPSSSEITGNGRVTMRKTATKAKPASSGSPWYGPDRVKYLGPFS 64          
BLAST of CF417583 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.152e-18
Identity = 46/64 (71.88%), Postives = 54/64 (84.38%), Query Frame = 3
Query:   33 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFS 215
            MA STMALSS SF GKAV L+PS +E++  G+++MRKT SK+  VSSGSPWYGPDRVKYLGPFS
Sbjct:    1 MAASTMALSSPSFAGKAVKLSPSSSEITGNGKVTMRKTASKAKTVSSGSPWYGPDRVKYLGPFS 64          
BLAST of CF417583 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.152e-18
Identity = 44/63 (69.84%), Postives = 52/63 (82.54%), Query Frame = 3
Query:   33 MATSTMALSSSFVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFS 215
            MA ST ALSS F GKAV L+PS +E++  G+++MRKT SK+  VSSGSPWYGPDRVKYLGPFS
Sbjct:    1 MAASTTALSSPFAGKAVKLSPSSSEVTGNGKVTMRKTASKAKPVSSGSPWYGPDRVKYLGPFS 63          
BLAST of CF417583 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.795e-18
Identity = 43/63 (68.25%), Postives = 52/63 (82.54%), Query Frame = 3
Query:   33 MATSTMALSSSFVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFS 215
            MA ST ALSS F GKAV L+PS +E++  G+++MRKT +K+  VSSGSPWYGPDRVKYLGPFS
Sbjct:    1 MAASTTALSSPFAGKAVKLSPSSSEVTGNGKVTMRKTANKAKPVSSGSPWYGPDRVKYLGPFS 63          
BLAST of CF417583 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.822e-17
Identity = 43/62 (69.35%), Postives = 51/62 (82.26%), Query Frame = 3
Query:   33 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFS 215
            MA +TMALSS SF G+AV L+PS  E++  GR+SMRKT +K V+S SPWYGPDRVKYLGPFS
Sbjct:    1 MAAATMALSSPSFAGQAVKLSPSAPEITGNGRVSMRKTVAKPVASSSPWYGPDRVKYLGPFS 62          
BLAST of CF417583 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.108e-17
Identity = 43/62 (69.35%), Postives = 50/62 (80.65%), Query Frame = 3
Query:   33 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFS 215
            MA +TMALSS SF G+AV L+PS +E+S  GRI+MRK  +KS  S SPWYGPDRVKYLGPFS
Sbjct:    1 MAAATMALSSPSFAGQAVKLSPSASEISGNGRITMRKAVAKSAPSSSPWYGPDRVKYLGPFS 62          
BLAST of CF417583 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.059e-17
Identity = 44/64 (68.75%), Postives = 53/64 (82.81%), Query Frame = 3
Query:   33 MATSTMALSSS-FVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFS 215
            MA STMALSSS F GKAV L+PS +E++  G+++MRKT SK+  VSS SPWYGP+RVKYLGPFS
Sbjct:    1 MAASTMALSSSSFAGKAVKLSPSSSEITGNGKVTMRKTASKAKPVSSSSPWYGPNRVKYLGPFS 64          
BLAST of CF417583 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.301e-17
Identity = 43/64 (67.19%), Postives = 54/64 (84.38%), Query Frame = 3
Query:   33 MATSTMALSSS-FVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFS 215
            MA +TMALSSS F GKAV L+PS +E++  G+++MRKT +K+  +SSGSPWYGPDRVKYLGPFS
Sbjct:    1 MAAATMALSSSSFAGKAVKLSPSSSEITGNGKVTMRKTVTKAKPLSSGSPWYGPDRVKYLGPFS 64          
BLAST of CF417583 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.042e-17
Identity = 43/64 (67.19%), Postives = 52/64 (81.25%), Query Frame = 3
Query:   33 MATSTMALSSS-FVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFS 215
            MA +TMALSSS F GK V L+PS +E++  G+ +MRKT +K+  VSSGSPWYGPDRVKYLGPFS
Sbjct:    1 MAAATMALSSSTFAGKVVKLSPSSSEITGNGKATMRKTATKAKPVSSGSPWYGPDRVKYLGPFS 64          
BLAST of CF417583 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.181e-16
Identity = 46/62 (74.19%), Postives = 50/62 (80.65%), Query Frame = 3
Query:   33 MATSTMALSSS-FVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFS 215
            MA STMALSSS   G+A+ LAPS  EL  G R+SMRKT  K+VSSGSPWYGPDRVKYLGPFS
Sbjct:    1 MAASTMALSSSSLAGQAMKLAPSTPELGVG-RVSMRKTAPKTVSSGSPWYGPDRVKYLGPFS 61          
The following BLAST results are available for this feature:
BLAST of CF417583 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
CB2G_SOLLC1.648e-1871.88Chlorophyll a-b binding protein 3C, chloroplastic ... [more]
CB24_TOBAC2.152e-1871.88Chlorophyll a-b binding protein 40, chloroplastic ... [more]
CB21_TOBAC2.152e-1869.84Chlorophyll a-b binding protein 16, chloroplastic ... [more]
CB25_NICPL4.795e-1868.25Chlorophyll a-b binding protein E, chloroplastic O... [more]
CB22_TOBAC1.822e-1769.35Chlorophyll a-b binding protein 21, chloroplastic ... [more]
CB2B_SOLLC3.108e-1769.35Chlorophyll a-b binding protein 1B, chloroplastic ... [more]
CB23_NICPL4.059e-1768.75Chlorophyll a-b binding protein C, chloroplastic O... [more]
CB25_TOBAC5.301e-1767.19Chlorophyll a-b binding protein 50, chloroplastic ... [more]
CB22_PETSP9.042e-1767.19Chlorophyll a-b binding protein 22L, chloroplastic... [more]
CB22_SOYBN1.181e-1674.19Chlorophyll a-b binding protein 2, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-513 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-006_H04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417583 ID=CF417583; Name=CF417583; organism=Citrus sinensis; type=EST; length=217bp
TAGAGCTCACCAACAACTCTGATCATTGTAAAATGGCAACCTCGACCATG
GCTCTCTCCTCATCATTCGTCGGCAAGGCTGTGAACCTTGCCCCTTCAGG
CAATGAGCTGAGCAATGGTGGCCGCATCTCCATGCGTAAAACCGGGAGCA
AGTCTGTTTCTTCAGGTAGCCCGTGGTACGGCCCGGACAGAGTCAAGTAC
TTGGGTCCATTCTCTGG
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