CF417589

Overview
NameCF417589
Unique NameCF417589
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length692
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417589 vs. ExPASy Swiss-Prot
Match: KATAM_ORYSJ (Xyloglucan galactosyltransferase KATAMARI1 homolog OS=Oryza sativa subsp. japonica GN=Os03g0144800 PE=2 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 9.616e-52
Identity = 109/220 (49.55%), Postives = 141/220 (64.09%), Query Frame = 1
Query:    1 DFGANTLLNLPRVQNVSVLTVERNPWRGSNQHGIPYPSYFHPSTSSQMLTWQQKMRLSKRPNLFTFIGAPRKGLEKAAIRDELIKQCGQSTRCKLLTCSNRSGASNKCYSPSEILGVMSKSQFCLQAPGDSFTRRSTFDSVLAGCIPVFFSQHTAYTQYAWYLPQDAEEYSVYINGEEGNNARRKRIEDELMKIPTKRVEXMRNKVIDLIPRVTYKHPNA 660
            D+G N LL +P  +N+S+L VE +PW  +N   IPYP+YFHP+  + +L WQ +MR  +RP LF+F GAPR    K+ IR +LI QC  S+ CKLL C       +KC+SPS I+ +   S FCLQ  GDS+TRRS FDS+LAGCIPVFF   +AY QY W+LP++   YSV+I  E+G       IED L  I    V+ MR +VI LIPRV Y  P +
Sbjct:  283 DWG-NKLLFMPAAKNMSMLVVESSPWN-ANDFAIPYPTYFHPAKDADVLLWQDRMRSLERPWLFSFAGAPRPDDPKS-IRSQLIDQCRTSSVCKLLECDL---GESKCHSPSAIMNMFQNSLFCLQPQGDSYTRRSAFDSMLAGCIPVFFHPGSAYVQYTWHLPKNYTRYSVFI-PEDGVRKGNVSIEDRLKSIHPDMVKKMREEVISLIPRVIYADPRS 495          
BLAST of CF417589 vs. ExPASy Swiss-Prot
Match: KATAM_ARATH (Xyloglucan galactosyltransferase KATAMARI1 OS=Arabidopsis thaliana GN=KAM1 PE=1 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 9.616e-52
Identity = 108/220 (49.09%), Postives = 145/220 (65.91%), Query Frame = 1
Query:    1 DFGANTLLNLPRVQNVSVLTVERNPWRGSNQHGIPYPSYFHPSTSSQMLTWQQKMRLSKRPNLFTFIGAPRKGLEKAAIRDELIKQCGQSTRCKLLTCSNRSGASNKCYSPSEILGVMSKSQFCLQAPGDSFTRRSTFDSVLAGCIPVFFSQHTAYTQYAWYLPQDAEEYSVYINGEEGNNARRKRIEDELMKIPTKRVEXMRNKVIDLIPRVTYKHPNA 660
            D+G N LL LP  +N+S+L VE +PW  +N  GIPYP+YFHP+  S++  WQ +MR  +R  LF+F GAPR    K+ IR ++I QC  S   KLL C       +KC++PS I+ +   S FCLQ  GDS+TRRS FDS+LAGCIPVFF   +AYTQY W+LP++   YSV+I  E+    R   IE+ L++IP K+V+ MR  VI+LIPR+ Y  P +
Sbjct:  306 DWG-NKLLFLPAAKNMSMLVVESSPWN-ANDFGIPYPTYFHPAKDSEVFEWQDRMRNLERKWLFSFAGAPRPDNPKS-IRGQIIDQCRNSNVGKLLECDF---GESKCHAPSSIMQMFQSSLFCLQPQGDSYTRRSAFDSMLAGCIPVFFHPGSAYTQYTWHLPKNYTTYSVFI-PEDDVRKRNISIEERLLQIPAKQVKIMRENVINLIPRLIYADPRS 518          
The following BLAST results are available for this feature:
BLAST of CF417589 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
KATAM_ORYSJ9.616e-5249.55Xyloglucan galactosyltransferase KATAMARI1 homolog... [more]
KATAM_ARATH9.616e-5249.09Xyloglucan galactosyltransferase KATAMARI1 OS=Arab... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-519 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-006_H10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417589 ID=CF417589; Name=CF417589; organism=Citrus sinensis; type=EST; length=692bp
GACTTCGGAGCGAACACTCTCCTCAACCTGCCGCGTGTCCAGAACGTGTC
GGTGCTGACCGTCGAGAGAAACCCCTGGAGGGGATCGAACCAGCACGGCA
TCCCTTATCCTTCTTACTTCCACCCGTCCACGTCATCCCAGATGCTGACT
TGGCAGCAGAAAATGAGACTCTCCAAGCGGCCCAACCTTTTCACTTTTAT
AGGAGCTCCGAGGAAGGGCTTAGAAAAAGCAGCGATTCGAGACGAGTTGA
TAAAGCAATGCGGTCAGTCAACTCGGTGCAAACTCCTGACATGCAGTAAC
AGATCGGGAGCAAGCAATAAGTGTTATTCACCGAGTGAAATACTTGGAGT
CATGAGCAAGTCTCAGTTCTGTTTGCAAGCGCCGGGCGATTCATTCACTC
GGCGGTCAACGTTCGACTCGGTGCTGGCGGGCTGCATTCCGGTGTTCTTC
TCGCAGCACACGGCGTACACCCAGTACGCGTGGTACTTACCTCAGGATGC
GGAGGAATATTCCGTTTATATTAACGGCGAGGAGGGGAATAATGCGAGGA
GGAAGAGGATCGAAGATGAGCTGATGAAGATACCGACGAAGCGAGTGGAG
AANATGAGGAACAAAGTGATTGACTTGATTCCGAGAGTAACGTACAAGCA
TCCGAATGCGAGTGACGACGGTGATTTGAAGATGCTGTTGAT
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