CF417593

Overview
NameCF417593
Unique NameCF417593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length205
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8065 contig Csv1_Contig8065:80..284. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417593 vs. ExPASy Swiss-Prot
Match: Y1684_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g06840 OS=Arabidopsis thaliana GN=At1g06840 PE=1 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 6.740e-28
Identity = 58/68 (85.29%), Postives = 63/68 (92.65%), Query Frame = 1
Query:    1 GKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVYEFMSNG 204
            GKVYKG L  GTVVA+KRAQEGSLQGEKEFLTEI+ LSRLHHRNLVSL+G+CDEEGEQMLVYE+M NG
Sbjct:  637 GKVYKGTLGSGTVVAIKRAQEGSLQGEKEFLTEIELLSRLHHRNLVSLLGFCDEEGEQMLVYEYMENG 704          
BLAST of CF417593 vs. ExPASy Swiss-Prot
Match: Y5374_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g37450 OS=Arabidopsis thaliana GN=At5g37450 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 4.830e-26
Identity = 54/68 (79.41%), Postives = 62/68 (91.18%), Query Frame = 1
Query:    1 GKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVYEFMSNG 204
            GKVYKG LP G VVAVKRA++GSLQG+KEF TEI+ LSRLHHRNLVSL+GYCD++GEQMLVYE+M NG
Sbjct:  643 GKVYKGHLPGGLVVAVKRAEQGSLQGQKEFFTEIELLSRLHHRNLVSLLGYCDQKGEQMLVYEYMPNG 710          
BLAST of CF417593 vs. ExPASy Swiss-Prot
Match: Y5977_ARATH (Probable leucine-rich repeat receptor-like protein kinase At5g49770 OS=Arabidopsis thaliana GN=At5g49770 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.960e-20
Identity = 42/68 (61.76%), Postives = 58/68 (85.29%), Query Frame = 1
Query:    1 GKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVYEFMSNG 204
            G+VYKG LP+G V+A+KRAQ+GS+QG  EF TEI+ LSR+HH+N+V L+G+C ++ EQMLVYE++ NG
Sbjct:  646 GQVYKGTLPNGQVIAIKRAQQGSMQGAFEFKTEIELLSRVHHKNVVKLLGFCFDQKEQMLVYEYIPNG 713          
BLAST of CF417593 vs. ExPASy Swiss-Prot
Match: THE1_ARATH (Receptor-like protein kinase THESEUS 1 OS=Arabidopsis thaliana GN=THE1 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.755e-19
Identity = 44/68 (64.71%), Postives = 52/68 (76.47%), Query Frame = 1
Query:    1 GKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVYEFMSNG 204
            G+VYKG L DGT VAVKR    S QG  EF TEI+ LS+L HR+LVSL+GYCDE  E +LVYE+M+NG
Sbjct:  522 GRVYKGTLEDGTKVAVKRGNPRSEQGMAEFRTEIEMLSKLRHRHLVSLIGYCDERSEMILVYEYMANG 589          
BLAST of CF417593 vs. ExPASy Swiss-Prot
Match: Y5597_ARATH (Probable receptor-like protein kinase At5g59700 OS=Arabidopsis thaliana GN=At5g59700 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.664e-18
Identity = 45/68 (66.18%), Postives = 51/68 (75.00%), Query Frame = 1
Query:    1 GKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVYEFMSNG 204
            GKVYKG L DGT VAVKRA   S QG  EF TEI+ LS+  HR+LVSL+GYCDE  E +LVYE+M NG
Sbjct:  494 GKVYKGELHDGTKVAVKRANPKSQQGLAEFRTEIEMLSQFRHRHLVSLIGYCDENNEMILVYEYMENG 561          
BLAST of CF417593 vs. ExPASy Swiss-Prot
Match: Y4391_ARATH (Probable receptor-like protein kinase At4g39110 OS=Arabidopsis thaliana GN=At4g39110 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.664e-18
Identity = 46/68 (67.65%), Postives = 50/68 (73.53%), Query Frame = 1
Query:    1 GKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVYEFMSNG 204
            G VY G L DGT VAVKR    S QG  EF TEIQ LS+L HR+LVSL+GYCDE  E +LVYEFMSNG
Sbjct:  538 GNVYIGTLDDGTKVAVKRGNPQSEQGITEFQTEIQMLSKLRHRHLVSLIGYCDENSEMILVYEFMSNG 605          
BLAST of CF417593 vs. ExPASy Swiss-Prot
Match: Y2232_ARATH (Probable receptor-like protein kinase At2g23200 OS=Arabidopsis thaliana GN=At2g23200 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.838e-18
Identity = 44/68 (64.71%), Postives = 50/68 (73.53%), Query Frame = 1
Query:    1 GKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVYEFMSNG 204
            G VYK ILPDGT  A+KR + GS QG  EF TEIQ LSR+ HR+LVSL GYC+E  E +LVYEFM  G
Sbjct:  500 GYVYKAILPDGTKAAIKRGKTGSGQGILEFQTEIQVLSRIRHRHLVSLTGYCEENSEMILVYEFMEKG 567          
BLAST of CF417593 vs. ExPASy Swiss-Prot
Match: Y1357_ARATH (Probable receptor-like protein kinase At1g30570 OS=Arabidopsis thaliana GN=At1g30570 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.838e-18
Identity = 43/68 (63.24%), Postives = 53/68 (77.94%), Query Frame = 1
Query:    1 GKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVYEFMSNG 204
            GKVY+G L DGT++A+KRA   S QG  EF TEI  LSRL HR+LVSL+G+CDE  E +LVYE+M+NG
Sbjct:  532 GKVYRGELEDGTLIAIKRATPHSQQGLAEFETEIVMLSRLRHRHLVSLIGFCDEHNEMILVYEYMANG 599          
BLAST of CF417593 vs. ExPASy Swiss-Prot
Match: HERK_ARATH (Receptor-like protein kinase HERK 1 OS=Arabidopsis thaliana GN=HERK1 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.323e-18
Identity = 43/68 (63.24%), Postives = 50/68 (73.53%), Query Frame = 1
Query:    1 GKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVYEFMSNG 204
            GKVYKG L DGT VAVKR    S QG  EF TEI+ LS+  HR+LVSL+GYCDE  E +L+YE+M NG
Sbjct:  497 GKVYKGELNDGTKVAVKRGNPKSQQGLAEFRTEIEMLSQFRHRHLVSLIGYCDENNEMILIYEYMENG 564          
BLAST of CF417593 vs. ExPASy Swiss-Prot
Match: Y2214_ARATH (Probable receptor-like protein kinase At2g21480 OS=Arabidopsis thaliana GN=At2g21480 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.079e-17
Identity = 43/68 (63.24%), Postives = 50/68 (73.53%), Query Frame = 1
Query:    1 GKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVYEFMSNG 204
            G VY G + DGT VA+KR    S QG  EF TEIQ LS+L HR+LVSL+GYCDE  E +LVYE+MSNG
Sbjct:  537 GNVYIGTIDDGTQVAIKRGNPQSEQGITEFHTEIQMLSKLRHRHLVSLIGYCDENAEMILVYEYMSNG 604          
The following BLAST results are available for this feature:
BLAST of CF417593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 134
Match NameE-valueIdentityDescription
Y1684_ARATH6.740e-2885.29Probable LRR receptor-like serine/threonine-protei... [more]
Y5374_ARATH4.830e-2679.41Probable LRR receptor-like serine/threonine-protei... [more]
Y5977_ARATH3.960e-2061.76Probable leucine-rich repeat receptor-like protein... [more]
THE1_ARATH9.755e-1964.71Receptor-like protein kinase THESEUS 1 OS=Arabidop... [more]
Y5597_ARATH1.664e-1866.18Probable receptor-like protein kinase At5g59700 OS... [more]
Y4391_ARATH1.664e-1867.65Probable receptor-like protein kinase At4g39110 OS... [more]
Y2232_ARATH2.838e-1864.71Probable receptor-like protein kinase At2g23200 OS... [more]
Y1357_ARATH2.838e-1863.24Probable receptor-like protein kinase At1g30570 OS... [more]
HERK_ARATH6.323e-1863.24Receptor-like protein kinase HERK 1 OS=Arabidopsis... [more]
Y2214_ARATH1.079e-1763.24Probable receptor-like protein kinase At2g21480 OS... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-523 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-007_A02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417593 ID=CF417593; Name=CF417593; organism=Citrus sinensis; type=EST; length=205bp
GGAAAGGTTTATAAAGGCATTCTTCCTGATGGCACGGTTGTTGCTGTGAA
GCGTGCCCAAGAGGGATCTTTGCAGGGAGAGAAGGAGTTCTTAACAGAAA
TACAATTTTTGTCAAGATTACATCATCGGAACCTTGTATCTTTGGTTGGA
TACTGTGATGAAGAAGGGGAACAGATGTTGGTGTATGAGTTTATGTCAAA
TGGGC
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