CF417601

Overview
NameCF417601
Unique NameCF417601
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF417601_ssr645 microsatellite CF417601_ssr645:645..656. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2216 contig Csv1_Contig2216:1021..1701. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417601 vs. ExPASy Swiss-Prot
Match: IAA27_ARATH (Auxin-responsive protein IAA27 OS=Arabidopsis thaliana GN=IAA27 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.214e-28
Identity = 56/75 (74.67%), Postives = 67/75 (89.33%), Query Frame = 3
Query:    3 QYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGLAPRAVEKC 227
            Q+GSHG  GR+ L+ES+L DLL GSE+V+TYEDKD DWMLVGDVPWEMFI +CK+LRIMKS++AIGLAPR +EKC
Sbjct:  227 QFGSHGGCGRDGLNESRLTDLLRGSEYVVTYEDKDSDWMLVGDVPWEMFICSCKKLRIMKSSEAIGLAPRVMEKC 301          
BLAST of CF417601 vs. ExPASy Swiss-Prot
Match: IAA8_ARATH (Auxin-responsive protein IAA8 OS=Arabidopsis thaliana GN=IAA8 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.483e-28
Identity = 58/74 (78.38%), Postives = 65/74 (87.84%), Query Frame = 3
Query:    3 QYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGLAPRAVEK 224
            Q G HGA GRE +SE KLKDLLHGSEFVLTYEDKDGDWMLVGDVPWE+F  TC++L+IMK +D+IGLAP AVEK
Sbjct:  241 QCGLHGAQGRERMSEIKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEIFTETCQKLKIMKGSDSIGLAPGAVEK 314          
BLAST of CF417601 vs. ExPASy Swiss-Prot
Match: IAA9_ARATH (Auxin-responsive protein IAA9 OS=Arabidopsis thaliana GN=IAA9 PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.034e-26
Identity = 57/76 (75.00%), Postives = 67/76 (88.16%), Query Frame = 3
Query:    3 QYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGL--APRAVEK 224
            Q GS+GA G++MLSE+KLKDLL+G ++VLTYEDKDGDWMLVGDVPWEMFI  CK+L+IMK  DAIGL  APRA+EK
Sbjct:  258 QCGSNGAAGKDMLSETKLKDLLNGKDYVLTYEDKDGDWMLVGDVPWEMFIDVCKKLKIMKGCDAIGLAAAPRAMEK 333          
BLAST of CF417601 vs. ExPASy Swiss-Prot
Match: IAA30_ORYSJ (Auxin-responsive protein IAA30 OS=Oryza sativa subsp. japonica GN=IAA30 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.493e-25
Identity = 54/73 (73.97%), Postives = 64/73 (87.67%), Query Frame = 3
Query:    9 GSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGLAPRAVEKC 227
            GSHG  G   ++ESK+ DLL+GSE+V TYEDKDGDWMLVGDVPWEMF+ +CKRLRIMK ++AIGLAPRA+EKC
Sbjct:  204 GSHGVNG---MNESKIADLLNGSEYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLAPRAMEKC 273          
BLAST of CF417601 vs. ExPASy Swiss-Prot
Match: IAA16_ARATH (Auxin-responsive protein IAA16 OS=Arabidopsis thaliana GN=IAA16 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 9.678e-25
Identity = 51/74 (68.92%), Postives = 66/74 (89.19%), Query Frame = 3
Query:    9 GSHGALG-REMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGLAPRAVEKC 227
            G++G  G ++ ++ESKL DLL+GS++V TYEDKDGDWMLVGDVPWEMF+ +CKR+RIMK ++AIGLAPRA+EKC
Sbjct:  159 GNYGPQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRIRIMKGSEAIGLAPRALEKC 232          
BLAST of CF417601 vs. ExPASy Swiss-Prot
Match: IAA7_ARATH (Auxin-responsive protein IAA7 OS=Arabidopsis thaliana GN=IAA7 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.058e-23
Identity = 49/73 (67.12%), Postives = 64/73 (87.67%), Query Frame = 3
Query:    9 GSHGALGR-EMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGLAPRAVEK 224
            G++GA G  + ++ESKL +LL+ SE+V +YEDKDGDWMLVGDVPWEMF+ +CKRLRIMK ++A+GLAPRA+EK
Sbjct:  165 GNYGAQGMIDFMNESKLMNLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAVGLAPRAMEK 237          
BLAST of CF417601 vs. ExPASy Swiss-Prot
Match: IAA14_ARATH (Auxin-responsive protein IAA14 OS=Arabidopsis thaliana GN=IAA14 PE=1 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 9.058e-23
Identity = 50/73 (68.49%), Postives = 63/73 (86.30%), Query Frame = 3
Query:    9 GSHGALGR-EMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGLAPRAVEK 224
            GS+GA G  + ++ESK+ DLL+ SE+V +YEDKDGDWMLVGDVPW MF+ +CKRLRIMK ++AIGLAPRA+EK
Sbjct:  151 GSYGAQGMIDFMNESKVMDLLNSSEYVPSYEDKDGDWMLVGDVPWPMFVESCKRLRIMKGSEAIGLAPRAMEK 223          
BLAST of CF417601 vs. ExPASy Swiss-Prot
Match: IAA21_ORYSJ (Auxin-responsive protein IAA21 OS=Oryza sativa subsp. japonica GN=IAA21 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.001e-21
Identity = 47/71 (66.20%), Postives = 58/71 (81.69%), Query Frame = 3
Query:   12 SHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGLAPRAVEK 224
            S+G  GR+ LS+ +L DL +G+E VLTYEDKD DWMLVGDVPW MF  +C+RLRIMK +DA+GLAPRA +K
Sbjct:  191 SNGKSGRDGLSDCRLMDLKNGTELVLTYEDKDEDWMLVGDVPWRMFTDSCRRLRIMKGSDAVGLAPRATDK 261          
BLAST of CF417601 vs. ExPASy Swiss-Prot
Match: IAA17_ARATH (Auxin-responsive protein IAA17 OS=Arabidopsis thaliana GN=IAA17 PE=1 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 1.708e-21
Identity = 49/77 (63.64%), Postives = 60/77 (77.92%), Query Frame = 3
Query:    9 GSHGALGRE----MLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGLAPRAVEKC 227
            G HG  G E     ++E KL DL++  ++V +YEDKDGDWMLVGDVPW MF+ TCKRLR+MK +DAIGLAPRA+EKC
Sbjct:  151 GKHG--GEEGMIDFMNERKLMDLVNSWDYVPSYEDKDGDWMLVGDVPWPMFVDTCKRLRLMKGSDAIGLAPRAMEKC 225          
BLAST of CF417601 vs. ExPASy Swiss-Prot
Match: AUX28_SOYBN (Auxin-induced protein AUX28 OS=Glycine max GN=AUX28 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.231e-21
Identity = 47/68 (69.12%), Postives = 58/68 (85.29%), Query Frame = 3
Query:   30 REMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAI--GLAPRAVEKC 227
            ++ ++ESKL DLL+ S++V TYEDKDGDWMLVGDVPWEMF+ +CKRLRIMK  +AI  GLAPRA+ KC
Sbjct:  172 KDFMNESKLNDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGKEAIGLGLAPRAMAKC 239          
The following BLAST results are available for this feature:
BLAST of CF417601 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
IAA27_ARATH3.214e-2874.67Auxin-responsive protein IAA27 OS=Arabidopsis thal... [more]
IAA8_ARATH5.483e-2878.38Auxin-responsive protein IAA8 OS=Arabidopsis thali... [more]
IAA9_ARATH1.034e-2675.00Auxin-responsive protein IAA9 OS=Arabidopsis thali... [more]
IAA30_ORYSJ1.493e-2573.97Auxin-responsive protein IAA30 OS=Oryza sativa sub... [more]
IAA16_ARATH9.678e-2568.92Auxin-responsive protein IAA16 OS=Arabidopsis thal... [more]
IAA7_ARATH9.058e-2367.12Auxin-responsive protein IAA7 OS=Arabidopsis thali... [more]
IAA14_ARATH9.058e-2368.49Auxin-responsive protein IAA14 OS=Arabidopsis thal... [more]
IAA21_ORYSJ1.001e-2166.20Auxin-responsive protein IAA21 OS=Oryza sativa sub... [more]
IAA17_ARATH1.708e-2163.64Auxin-responsive protein IAA17 OS=Arabidopsis thal... [more]
AUX28_SOYBN2.231e-2169.12Auxin-induced protein AUX28 OS=Glycine max GN=AUX2... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-531 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-007_A11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417601 ID=CF417601; Name=CF417601; organism=Citrus sinensis; type=EST; length=681bp
GGCAATATGGATCTCATGGGGCTCTGGGCAGGGAGATGCTGAGTGAAAGC
AAGTTGAAGGATCTGCTACATGGCTCAGAATTCGTTCTCACTTATGAAGA
CAAAGATGGGGATTGGATGCTTGTGGGTGATGTCCCCTGGGAGATGTTTA
TTGGTACATGCAAGAGGTTGAGGATTATGAAGAGCACTGATGCCATTGGC
CTAGCGCCAAGGGCTGTGGAGAAATGCAGGAACAGAAACTAGCTACTGTT
CAACATATTGTTGGTATTCATCCAGCAATTCTCGGTGATAAAATTCTGGC
AGATGACAGAAAATAACATGATCCAAATTCATGCTTGGGGGTGTTGGAGG
GCATCTGCTTTTCTGTGTTACCACATTACTACGTTTACTGTGATGGATTT
TCATGTTCTGTAAGCTGTGATTGTTGTCCTGTTATTAAAATTATAAAACT
CTCGTAGACCTTGTATTTTGGAGTGAACCTCTGAGATTGGATCTCCTCAA
GGAGTTCTGACAAGTTCCTGTTCCCAACAGGTGCCTTAGTTTGTAAAGTG
CGTTGTTTGTTGAACTACTTTGTTATGCGTGCTTGTATGGTGAAAAAAAA
AAGACATCATCCATGTCATTAATTTGTAACCCTGTCTCCATTACCTGTCT
GTCTGTGCCATACTTTCATGTTGCTCTGTCT
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