CF417608

Overview
NameCF417608
Unique NameCF417608
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length664
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF417608_ssr383 microsatellite CF417608_ssr383:383..392. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig468 contig Csv1_Contig468:1..663. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417608 vs. ExPASy Swiss-Prot
Match: CRY1_ARATH (Cryptochrome-1 OS=Arabidopsis thaliana GN=CRY1 PE=1 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 6.501e-19
Identity = 36/82 (43.90%), Postives = 47/82 (57.32%), Query Frame = 3
Query:  354 PQQNLQVLVEERE--------------TGGVVPVWSPPTSSYSEQLVGDENGIG---TSSSYLQRHPQSHQIMNCRRLSQTG 548
            P+ N++++ E  E              +GG+VP WSP    YSEQ   +EN IG   T+SSYLQ H   H+I+N RRLSQTG
Sbjct:  606 PEFNIRIVAESTEDSTAESSSSGRRERSGGIVPEWSP---GYSEQFPSEENRIGGGSTTSSYLQNH---HEILNWRRLSQTG 681          

HSP 2 Score: 55.0694 bits (131), Expect = 6.501e-19
Identity = 42/90 (46.67%), Postives = 47/90 (52.22%), Query Frame = 2
Query:    2 EEGLGDSSD--SAPIAFPPDIQMEEIPEPARNNLPTTARRYEDQMVPSMT-TXXXXXXXXXXXXXXXXXXXXXXAEVPRN-ANVNQEPRR 259
            EEGLGDS++   API FP DI MEE  EP R N     RRYEDQMVPS+T +                      AEVPRN  N NQ  +R
Sbjct:  507 EEGLGDSAEVEEAPIEFPRDITMEET-EPTRLN---PNRRYEDQMVPSITSSLIRPEEDEESSLNLRNSVGDSRAEVPRNMVNTNQAQQR 592          
The following BLAST results are available for this feature:
BLAST of CF417608 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
CRY1_ARATH6.501e-1943.90Cryptochrome-1 OS=Arabidopsis thaliana GN=CRY1 PE=... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-538 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-007_B09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417608 ID=CF417608; Name=CF417608; organism=Citrus sinensis; type=EST; length=664bp
TGAGGAAGGTCTTGGAGACTCCTCTGACTCAGCCCCAATTGCCTTTCCTC
CGGACATACAGATGGAGGAAATCCCTGAACCTGCTAGGAACAACCTTCCT
ACCACAGCTCGGCGTTATGAGGATCAGATGGTCCCAAGCATGACTACTTC
TTTGGTGAGAGTTGAAGAGGAAGAGTCTTCTTTAGAGCTTCGAAATTCAG
CAGAAGAAAGCAGAGCAGAAGTGCCGAGAAATGCAAATGTAAATCAAGAA
CCTAGAAGAGACACTTTAAACCAAGGTGTTCTCCAAACTGTTCATAACAA
CAACGCTTTTCAACAATTTAATGCTGCAATAGCGCTGGCAAATGCTGAAG
ACTCCACAGCAGAATCTTCAAGTACTAGTAGAAGAGAGAGAGACGGGAGG
GGTGGTTCCAGTTTGGTCTCCTCCAACTTCTAGTTACTCAGAGCAGCTAG
TAGGTGATGAAAATGGCATTGGAACGAGTTCATCTTACTTGCAGAGGCAT
CCACAGTCTCACCAAATAATGAATTGTAGGCGGCTTTCTCAAACTGGGTA
AGACATATGTACATATGTAGATGACACAAACTGGAAGCTGGGAAGATGAA
AGATGAAATGATTTCCCAATCCAATGCGCCAAAGGGATGATAAACCAGTG
TCACATGTTATCTT
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