CF417612

Overview
NameCF417612
Unique NameCF417612
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7508 contig Csv1_Contig7508:900..1553. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417612 vs. ExPASy Swiss-Prot
Match: UXS1_RAT (UDP-glucuronic acid decarboxylase 1 OS=Rattus norvegicus GN=Uxs1 PE=1 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.393e-57
Identity = 105/184 (57.07%), Postives = 136/184 (73.91%), Query Frame = 1
Query:    1 YWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGPVNIGNPGEFTMLELAETVKELINPEIEIKMVENTPDDPRQRKPDISKAKELLGWEPKVKLRDGLPLMEEDFRSRLGVPKRN 552
            YWG+VNPIG R+CYDEGKRVAET+ + Y +Q G+++R+ARIFNT+GPRM+++DGRVVSNFI QAL+GEPLTV   G+QTR+F YVSD+V+GL+ LM    + PVN+GNP E T+LE A+ +K L+    EI+ +    DDP++RKPDI KAK +LGWEP V L +GL      FR  L     N
Sbjct:  218 YWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKELEYQANN 401          
BLAST of CF417612 vs. ExPASy Swiss-Prot
Match: UXS1_PONAB (UDP-glucuronic acid decarboxylase 1 OS=Pongo abelii GN=UXS1 PE=2 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.393e-57
Identity = 105/184 (57.07%), Postives = 136/184 (73.91%), Query Frame = 1
Query:    1 YWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGPVNIGNPGEFTMLELAETVKELINPEIEIKMVENTPDDPRQRKPDISKAKELLGWEPKVKLRDGLPLMEEDFRSRLGVPKRN 552
            YWG+VNPIG R+CYDEGKRVAET+ + Y +Q G+++R+ARIFNT+GPRM+++DGRVVSNFI QAL+GEPLTV   G+QTR+F YVSD+V+GL+ LM    + PVN+GNP E T+LE A+ +K L+    EI+ +    DDP++RKPDI KAK +LGWEP V L +GL      FR  L     N
Sbjct:  218 YWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKELEYQANN 401          
BLAST of CF417612 vs. ExPASy Swiss-Prot
Match: UXS1_MOUSE (UDP-glucuronic acid decarboxylase 1 OS=Mus musculus GN=Uxs1 PE=2 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.393e-57
Identity = 105/184 (57.07%), Postives = 136/184 (73.91%), Query Frame = 1
Query:    1 YWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGPVNIGNPGEFTMLELAETVKELINPEIEIKMVENTPDDPRQRKPDISKAKELLGWEPKVKLRDGLPLMEEDFRSRLGVPKRN 552
            YWG+VNPIG R+CYDEGKRVAET+ + Y +Q G+++R+ARIFNT+GPRM+++DGRVVSNFI QAL+GEPLTV   G+QTR+F YVSD+V+GL+ LM    + PVN+GNP E T+LE A+ +K L+    EI+ +    DDP++RKPDI KAK +LGWEP V L +GL      FR  L     N
Sbjct:  218 YWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKELEYQANN 401          
BLAST of CF417612 vs. ExPASy Swiss-Prot
Match: UXS1_HUMAN (UDP-glucuronic acid decarboxylase 1 OS=Homo sapiens GN=UXS1 PE=1 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.393e-57
Identity = 105/184 (57.07%), Postives = 136/184 (73.91%), Query Frame = 1
Query:    1 YWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGPVNIGNPGEFTMLELAETVKELINPEIEIKMVENTPDDPRQRKPDISKAKELLGWEPKVKLRDGLPLMEEDFRSRLGVPKRN 552
            YWG+VNPIG R+CYDEGKRVAET+ + Y +Q G+++R+ARIFNT+GPRM+++DGRVVSNFI QAL+GEPLTV   G+QTR+F YVSD+V+GL+ LM    + PVN+GNP E T+LE A+ +K L+    EI+ +    DDP++RKPDI KAK +LGWEP V L +GL      FR  L     N
Sbjct:  218 YWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKELEYQANN 401          
BLAST of CF417612 vs. ExPASy Swiss-Prot
Match: UXS1_XENTR (UDP-glucuronic acid decarboxylase 1 OS=Xenopus tropicalis GN=uxs1 PE=2 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 6.473e-55
Identity = 101/178 (56.74%), Postives = 132/178 (74.16%), Query Frame = 1
Query:    1 YWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGPVNIGNPGEFTMLELAETVKELINPEIEIKMVENTPDDPRQRKPDISKAKELLGWEPKVKLRDGLPLMEEDFRSRL 534
            YWG+VNPIG R+CYDEGKRVAET+ + Y +Q G+++R+ARIFNT+GPRM+++DGRVVSNFI QAL+GE LTV   G QTR+F YVSD+V+GL+ LM    + PVN+GNP E ++++ A  +K+L+    EI  +    DDP++RKPDI KAK LLGWEP V L +GL      FR  L
Sbjct:  219 YWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEQLTVYGSGEQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPQEHSIVQFARLIKQLVGSGGEISFLSEAQDDPQRRKPDIRKAKLLLGWEPVVPLEEGLNKTIHYFRKEL 396          
BLAST of CF417612 vs. ExPASy Swiss-Prot
Match: UXS1_DANRE (UDP-glucuronic acid decarboxylase 1 OS=Danio rerio GN=uxs1 PE=2 SV=2)

HSP 1 Score: 211.46 bits (537), Expect = 3.212e-54
Identity = 98/167 (58.68%), Postives = 129/167 (77.25%), Query Frame = 1
Query:    1 YWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGPVNIGNPGEFTMLELAETVKELINPEIEIKMVENTPDDPRQRKPDISKAKELLGWEPKVKLRDGL 501
            YWG+VNPIG R+CYDEGKRVAET+ + Y +Q G+++R+ARIFNT+G RM+++DGRVVSNFI QAL+GE LTV   G+QTR+F YVSD+V+GL+ LM    + PVN+GNP E T+LE A+ +K L+     I+ +    DDP++R+PDI KAK LLGWEP V L +GL
Sbjct:  216 YWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGSRMHMNDGRVVSNFILQALQGEALTVYGSGSQTRAFQYVSDLVNGLVSLMNSNISSPVNLGNPEEHTILEFAQLIKSLVASRSHIQFLPEAQDDPQRRRPDIRKAKLLLGWEPVVPLEEGL 382          
BLAST of CF417612 vs. ExPASy Swiss-Prot
Match: GME2_ORYSJ (GDP-mannose 3,5-epimerase 2 OS=Oryza sativa subsp. japonica GN=GME-2 PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 2.659e-16
Identity = 55/164 (33.54%), Postives = 82/164 (50.00%), Query Frame = 1
Query:   19 PIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGR--VVSNFIAQALRG-EPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGPVNIGNPGEFTMLELAETVKELINPEIEIKMVENTPDDPRQRKPDISKAKELLGWEPKVKLRDGL 501
            P   +  Y   K   E L   Y +  GI+ R+ R  N YGP      GR    + F  +AL   +   +   G QTRSF ++ + V+G++RL + +   PVNIG+    +M E+AE V    N ++ I  +   P+  R R  D +  KE LGW P ++L+DGL
Sbjct:  161 PAEPQDAYGLEKLATEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAFCRKALTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEIVLSFENKQLPIHHIPG-PEGVRGRNSDNTLIKEKLGWAPTMRLKDGL 323          
BLAST of CF417612 vs. ExPASy Swiss-Prot
Match: GME1_ORYSJ (GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp. japonica GN=GME-1 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.723e-15
Identity = 54/164 (32.93%), Postives = 81/164 (49.39%), Query Frame = 1
Query:   19 PIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGR--VVSNFIAQALRG-EPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGPVNIGNPGEFTMLELAETVKELINPEIEIKMVENTPDDPRQRKPDISKAKELLGWEPKVKLRDGL 501
            P   +  Y   K   E L   Y +  GI+ R+ R  N YGP      GR    + F  +A    +   +   G QTRSF ++ + V+G++RL + +   PVNIG+    +M E+AE +    + E+ I  +   P+  R R  D +  KE LGW P +KL+DGL
Sbjct:  168 PAEPQDAYGLEKLATEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEIILSFEDRELPIHHIPG-PEGVRGRNSDNTLIKEKLGWAPTMKLKDGL 330          
BLAST of CF417612 vs. ExPASy Swiss-Prot
Match: GME1_ORYSI (GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp. indica GN=OsI_032456 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.723e-15
Identity = 54/164 (32.93%), Postives = 81/164 (49.39%), Query Frame = 1
Query:   19 PIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGR--VVSNFIAQALRG-EPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGPVNIGNPGEFTMLELAETVKELINPEIEIKMVENTPDDPRQRKPDISKAKELLGWEPKVKLRDGL 501
            P   +  Y   K   E L   Y +  GI+ R+ R  N YGP      GR    + F  +A    +   +   G QTRSF ++ + V+G++RL + +   PVNIG+    +M E+AE +    + E+ I  +   P+  R R  D +  KE LGW P +KL+DGL
Sbjct:  168 PAEPQDAYGLEKLATEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEIILSFEDRELPIHHIPG-PEGVRGRNSDNTLIKEKLGWAPTMKLKDGL 330          
BLAST of CF417612 vs. ExPASy Swiss-Prot
Match: YTCB_BACSU (Uncharacterized UDP-glucose epimerase ytcB OS=Bacillus subtilis GN=ytcB PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.014e-15
Identity = 51/158 (32.28%), Postives = 77/158 (48.73%), Query Frame = 1
Query:   34 SCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENT--GPVNIGNPGEFTMLELAETVKELINPEIEIKMVENTPDDPRQRKPDISKAKELLGWEPKVKLRDGL 501
            S Y   K   E L   Y +  GI I I R F  YGPR   D        I Q L+ +PLT+   G Q+R F Y+SD V G+  ++   +     VNIG     ++L++   ++++   +  +   +    +P     DISKAK+LL ++P   L+DGL
Sbjct:  147 SPYGVTKLTGEKLCHVYKQSFGIPIVILRFFTVYGPRQRPD--MAFHRLIKQHLQQKPLTIFGDGQQSRDFTYISDCVKGITAVLGKPHLIGETVNIGGAERASVLKVVSLIEDISGRKATLHFSDKIAGEPSNTWADISKAKQLLHYDPATSLKDGL 302          
The following BLAST results are available for this feature:
BLAST of CF417612 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
UXS1_RAT1.393e-5757.07UDP-glucuronic acid decarboxylase 1 OS=Rattus norv... [more]
UXS1_PONAB1.393e-5757.07UDP-glucuronic acid decarboxylase 1 OS=Pongo abeli... [more]
UXS1_MOUSE1.393e-5757.07UDP-glucuronic acid decarboxylase 1 OS=Mus musculu... [more]
UXS1_HUMAN1.393e-5757.07UDP-glucuronic acid decarboxylase 1 OS=Homo sapien... [more]
UXS1_XENTR6.473e-5556.74UDP-glucuronic acid decarboxylase 1 OS=Xenopus tro... [more]
UXS1_DANRE3.212e-5458.68UDP-glucuronic acid decarboxylase 1 OS=Danio rerio... [more]
GME2_ORYSJ2.659e-1633.54GDP-mannose 3,5-epimerase 2 OS=Oryza sativa subsp.... [more]
GME1_ORYSJ1.723e-1532.93GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp.... [more]
GME1_ORYSI1.723e-1532.93GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp.... [more]
YTCB_BACSU5.014e-1532.28Uncharacterized UDP-glucose epimerase ytcB OS=Baci... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-542 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-007_C01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417612 ID=CF417612; Name=CF417612; organism=Citrus sinensis; type=EST; length=654bp
TATTGGGGTAATGTCAATCCAATTGGGGTTCGTAGCTGCTATGATGAGGG
AAAGCGTGTGGCTGAGACTTTGATGTTTGATTATCATAGACAGCATGGGA
TACAAATCCGCATTGCTAGAATCTTTAACACTTATGGACCACGCATGAAT
ATTGATGATGGGCGTGTGGTCAGCAATTTCATTGCTCAGGCACTACGAGG
TGAACCTTTGACTGTCCAAAAGCCTGGAACACAAACTCGCAGTTTCTGTT
ATGTCTCTGATATGGTGGATGGCCTTATTCGCCTCATGGAAGGAGAGAAC
ACTGGCCCAGTCAACATTGGAAACCCAGGTGAATTTACAATGCTTGAGCT
TGCTGAGACAGTGAAGGAGCTTATCAATCCTGAGATTGAGATAAAGATGG
TTGAGAACACTCCTGATGATCCACGACAAAGAAAACCTGACATCTCAAAA
GCAAAGGAATTGCTTGGATGGGAGCCAAAAGTCAAGTTGCGGGATGGACT
TCCTCTTATGGAAGAGGATTTCCGATCAAGGCTTGGAGTTCCCAAAAGGA
ATTAATAAAAACAGCAAGAATTATATCGATACAGGGTGAACACTTGAGTC
TTGGATTCTTTCCACCTAATGTGGGAGTGCTTTAGAATTAGAAACACAAG
TCCT
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