CF417618

Overview
NameCF417618
Unique NameCF417618
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7260 contig Csv1_Contig7260:362..1044. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF417618 vs. ExPASy Swiss-Prot
Match: Y1934_ARATH (Uncharacterized protein At1g09340, chloroplastic OS=Arabidopsis thaliana GN=At1g09340 PE=1 SV=1)

HSP 1 Score: 426.787 bits (1096), Expect = 5.210e-119
Identity = 199/227 (87.67%), Postives = 220/227 (96.92%), Query Frame = 3 
Query:    3 QVTLFTRGKAPIAQQLPGESDEEFAEFSSKILHLKGDRKDYDFVKSSLSAKGFDVVYDINGREADEVEPILDALPNLEQFIYCSSAGVYLKSDLLPHCETDAVDPKSRHKGKLNTESVLESKGVNWTSLRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPGSGIQVTQLGHVKDLARAFVQVLGNEKASRQVFNISGEKYVTFDGLARACAKAAGFPEPELVHYNPK 683
            QVTLFTRGK+PIA+QLPGESD++FA+FSSKILHLKGDRKDYDFVKSSLSA+GFDVVYDINGREA+EVEPIL+ALP LEQ+IYCSSAGVYLKSD+LPHCE DAVDPKSRHKGKL TES+L+SKGVNWTS+RPVYIYGPLNYNPVEEWFFHRLKAGRPIP+P SGIQ++QLGHVKDLA AF+ VLGNEKASR++FNISGEKYVTFDGLA+ACAKA GFPEPE+VHYNPK
Sbjct:   79 QVTLFTRGKSPIAKQLPGESDQDFADFSSKILHLKGDRKDYDFVKSSLSAEGFDVVYDINGREAEEVEPILEALPKLEQYIYCSSAGVYLKSDILPHCEEDAVDPKSRHKGKLETESLLQSKGVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPVPNSGIQISQLGHVKDLATAFLNVLGNEKASREIFNISGEKYVTFDGLAKACAKAGGFPEPEIVHYNPK 305
[Close]
BLAST of CF417618 vs. ExPASy Swiss-Prot
Match: Y3314_ARATH (Uncharacterized protein At3g63140, chloroplastic OS=Arabidopsis thaliana GN=At3g63140 PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.503e-33
Identity = 77/187 (41.18%), Postives = 110/187 (58.82%), Query Frame = 3 
Query:  132 VKSSLSAKGFDVVYDINGREADEVEPILDALPN--LEQFIYCSSAGVYLKSDLLPHCETDAVDPKSRHKGKLNTESVLESKGVNWTSLRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPGSGIQVTQLGHVKDLARAFVQVLGN-EKASRQVFNISGEKYVTFDGLARACAKAAGFPEPELVHYNPK 683
            V + +  + FDVV D NG++ D V P++D   +  ++QF++ SSAG+Y  ++  PH E DAV   + H   +  E  L     NW S RP Y+ G  N    EEWFF R+   R +PIPGSG+Q+T + HV+DL+      + N E AS  +FN   ++ VT DG+A+ CA AAG    E+VHY+PK
Sbjct:  149 VANVVGGETFDVVLDNNGKDLDTVRPVVDWAKSSGVKQFLFISSAGIYKSTEQPPHVEGDAVKADAGH---VVVEKYLAETFGNWASFRPQYMIGSGNNKDCEEWFFDRIVRDRAVPIPGSGLQLTNISHVRDLSSMLTSAVANPEAASGNIFNCVSDRAVTLDGMAKLCAAAAG-KTVEIVHYDPK 331
The following BLAST results are available for this feature:
BLAST of CF417618 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
Y1934_ARATH5.210e-11987.67Uncharacterized protein At1g09340, chloroplastic O... [more]
Y3314_ARATH1.503e-3341.18Uncharacterized protein At3g63140, chloroplastic O... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-548 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-007_C10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417618 ID=CF417618; Name=CF417618; organism=Citrus sinensis; type=EST; length=683bp
ATCAGGTGACCTTGTTTACTAGGGGAAAGGCACCAATCGCCCAACAATTG
CCCGGTGAATCAGACGAGGAATTCGCCGAATTTTCTTCCAAGATCTTGCA
TTTGAAAGGAGACAGAAAGGACTATGATTTTGTGAAATCCAGCCTCTCTG
CCAAAGGCTTTGATGTTGTTTATGATATAAATGGACGAGAGGCAGATGAA
GTCGAACCCATATTGGATGCACTGCCAAATCTAGAACAGTTCATCTACTG
CTCCTCAGCTGGTGTTTATCTAAAATCTGACCTTTTACCACACTGTGAGA
CCGACGCTGTTGATCCAAAGAGCAGGCACAAGGGAAAGCTTAATACAGAG
TCCGTACTGGAATCAAAAGGCGTGAACTGGACTTCTTTAAGGCCAGTCTA
TATATATGGTCCCTTGAACTACAACCCTGTTGAAGAGTGGTTCTTCCACC
GTTTGAAAGCAGGTCGCCCAATTCCAATCCCAGGCTCCGGAATACAAGTA
ACCCAGCTTGGTCATGTAAAGGACTTGGCTAGGGCCTTTGTTCAGGTTCT
TGGCAATGAAAAAGCCAGCAGGCAGGTATTCAACATCTCAGGAGAGAAGT
ATGTCACCTTTGATGGATTAGCCAGGGCATGTGCAAAGGCTGCTGGCTTT
CCTGAGCCTGAACTTGTGCACTACAACCCCAAG
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