CF417620

Overview
NameCF417620
Unique NameCF417620
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length721
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3129 contig Csv1_Contig3129:47..767. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417620 vs. ExPASy Swiss-Prot
Match: BIK1_ARATH (Serine/threonine-protein kinase BIK1 OS=Arabidopsis thaliana GN=BIK1 PE=1 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.048e-48
Identity = 98/185 (52.97%), Postives = 122/185 (65.95%), Query Frame = 1
Query:  142 VKPERKHNRSISDL--------SDPSTPRNLEDSRKNAVLYTHVIAFSLFELETITKSFRSDYILGEGGFGTVYKGYIDENVRVGLK---SLPVAVKVLNKEGLQGHREWLTEVNFLGQLRHPNLVKLIGYCCEDDHRLLVYEFMFRGSLENHLFRRATV--PLSWATRMMIAFGAAKGLAFLHN 657
            VK +  HN   SDL           ST    + +    +  T V +F+  EL+  T++FR D ++GEGGFG V+KG++DE+     K    L +AVK LN+EG QGHREWLTE+N+LGQL HPNLVKLIGYC ED+HRLLVYEFM +GSLENHLFRR     PL W  R+ +A  AAKGLAFLH+
Sbjct:    9 VKADIFHNGKSSDLYGLSLSSRKSSSTVAAAQKTEGEILSSTPVKSFTFNELKLATRNFRPDSVIGEGGFGCVFKGWLDESTLTPTKPGTGLVIAVKKLNQEGFQGHREWLTEINYLGQLSHPNLVKLIGYCLEDEHRLLVYEFMQKGSLENHLFRRGAYFKPLPWFLRVNVALDAAKGLAFLHS 193          

HSP 2 Score: 31.5722 bits (70), Expect = 1.048e-48
Identity = 16/29 (55.17%), Postives = 18/29 (62.07%), Query Frame = 2
Query:  635 KGLLSFTMLKGQFIYRDFKTSNILLDSDY 721
            KGL        + IYRD K SNILLD+DY
Sbjct:  186 KGLAFLHSDPVKVIYRDIKASNILLDADY 214          
BLAST of CF417620 vs. ExPASy Swiss-Prot
Match: NAK_ARATH (Probable serine/threonine-protein kinase NAK OS=Arabidopsis thaliana GN=NAK PE=2 SV=2)

HSP 1 Score: 190.66 bits (483), Expect = 6.917e-48
Identity = 102/178 (57.30%), Postives = 126/178 (70.79%), Query Frame = 1
Query:  154 RKHNRSISDLSDPSTPRNLEDSRKNAVLYTHVIAFSLFELETITKSFRSDYILGEGGFGTVYKGYIDENVRVGLK---SLPVAVKVLNKEGLQGHREWLTEVNFLGQLRHPNLVKLIGYCCEDDHRLLVYEFMFRGSLENHLFRRATV--PLSWATRMMIAFGAAKGLAFLHNAERPV 672
            R  ++  S  S    PR   +  +NA L      FSL EL++ T++FR D ++GEGGFG V+KG+IDE+     K    + +AVK LN+EG QGHREWL E+N+LGQL HPNLVKLIGYC E++HRLLVYEFM RGSLENHLFRR T   PLSW TR+ +A GAA+GLAFLHNA+  V
Sbjct:   26 RDGSKGSSTASFSYMPRTEGEILQNANLKN----FSLSELKSATRNFRPDSVVGEGGFGCVFKGWIDESSLAPSKPGTGIVIAVKRLNQEGFQGHREWLAEINYLGQLDHPNLVKLIGYCLEEEHRLLVYEFMTRGSLENHLFRRGTFYQPLSWNTRVRMALGAARGLAFLHNAQPQV 199          
BLAST of CF417620 vs. ExPASy Swiss-Prot
Match: APK1B_ARATH (Protein kinase APK1B, chloroplastic OS=Arabidopsis thaliana GN=APK1B PE=2 SV=2)

HSP 1 Score: 187.578 bits (475), Expect = 5.856e-47
Identity = 92/145 (63.45%), Postives = 111/145 (76.55%), Query Frame = 1
Query:  253 AFSLFELETITKSFRSDYILGEGGFGTVYKGYIDENVRVGLK---SLPVAVKVLNKEGLQGHREWLTEVNFLGQLRHPNLVKLIGYCCEDDHRLLVYEFMFRGSLENHLFRRATV--PLSWATRMMIAFGAAKGLAFLHNAERPV 672
            +F+  EL+  T++FR D +LGEGGFG+V+KG+IDE      K    + +AVK LN++G QGH+EWL EVN+LGQ  HPNLVKLIGYC ED+HRLLVYEFM RGSLENHLFRR +   PLSW  R+ +A GAAKGLAFLHNAE  V
Sbjct:   56 SFTFAELKAATRNFRPDSVLGEGGFGSVFKGWIDEQTLTASKPGTGVVIAVKKLNQDGWQGHQEWLAEVNYLGQFSHPNLVKLIGYCLEDEHRLLVYEFMPRGSLENHLFRRGSYFQPLSWTLRLKVALGAAKGLAFLHNAETSV 200          
BLAST of CF417620 vs. ExPASy Swiss-Prot
Match: Y3545_ARATH (Probable receptor-like protein kinase At3g55450 OS=Arabidopsis thaliana GN=At3g55450 PE=1 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.608e-46
Identity = 88/145 (60.69%), Postives = 107/145 (73.79%), Query Frame = 1
Query:  241 THVIAFSLFELETITKSFRSDYILGEGGFGTVYKGYIDENVRVGLKS---LPVAVKVLNKEGLQGHREWLTEVNFLGQLRHPNLVKLIGYCCEDDHRLLVYEFMFRGSLENHLFRRAT---VPLSWATRMMIAFGAAKGLAFLHN 657
            T V +FS  EL+  T++FRSD ++GEGGFG V++G++DE      KS   L +AVK LN +G QGHREWLTE+N+LGQL HPNLVKLIGYC ED+ RLLVYEFM +GSLENHLF        PLSW  R+ +A  AAKGLAFLH+
Sbjct:   44 TTVKSFSFNELKLATRNFRSDSVVGEGGFGCVFRGWLDETTLTPTKSSSGLVIAVKRLNPDGFQGHREWLTEINYLGQLSHPNLVKLIGYCLEDEQRLLVYEFMHKGSLENHLFANGNKDFKPLSWILRIKVALDAAKGLAFLHS 188          

HSP 2 Score: 31.187 bits (69), Expect = 1.608e-46
Identity = 16/29 (55.17%), Postives = 18/29 (62.07%), Query Frame = 2
Query:  635 KGLLSFTMLKGQFIYRDFKTSNILLDSDY 721
            KGL        + IYRD K SNILLDSD+
Sbjct:  181 KGLAFLHSDPVKVIYRDIKASNILLDSDF 209          
BLAST of CF417620 vs. ExPASy Swiss-Prot
Match: APK2B_ARATH (Protein kinase 2B, chloroplastic OS=Arabidopsis thaliana GN=APK2B PE=1 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.795e-46
Identity = 106/215 (49.30%), Postives = 137/215 (63.72%), Query Frame = 1
Query:   55 MGNCGTREESAVVSTVQVQQLHMLSSSLPVKPERKHNRSIS----DLSDPSTPRNLEDSRKNAVLYT--HVIAFSLFELETITKSFRSDYILGEGGFGTVYKGYIDENVRVGLK---SLPVAVKVLNKEGLQGHREWLTEVNFLGQLRHPNLVKLIGYCCEDDHRLLVYEFMFRGSLENHLFRRATVPLSWATRMMIAFGAAKGLAFLHNAERPV 672
            MGNC   + SA V +      H  S+SL  +   K +RS       ++  S+  +L   R    + +  ++ AF+  EL+  T++FR D +LGEGGFG V+KG+ID       K    + VAVK L  EG QGH+EWLTEVN+LGQL HPNLVKL+GYC E ++RLLVYEFM +GSLENHLFRR   PL+WA RM +A GAAKGL FLH+A+  V
Sbjct:    1 MGNC--LDSSAKVDSSS-HSPHANSASLSSRVSSKTSRSTVPSSLSINSYSSVESLPTPRTEGEILSSPNLKAFTFNELKNATRNFRPDSLLGEGGFGYVFKGWIDGTTLTASKPGSGIVVAVKKLKTEGYQGHKEWLTEVNYLGQLSHPNLVKLVGYCVEGENRLLVYEFMPKGSLENHLFRRGAQPLTWAIRMKVAIGAAKGLTFLHDAKSQV 212          
BLAST of CF417620 vs. ExPASy Swiss-Prot
Match: APK2A_ARATH (Protein kinase 2A, chloroplastic OS=Arabidopsis thaliana GN=APK2A PE=1 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 9.349e-45
Identity = 105/218 (48.17%), Postives = 134/218 (61.47%), Query Frame = 1
Query:   55 MGNCGTREESAVVSTVQVQQLHMLSSSLPVKPERKHNRSISDLSDPSTPRNLEDS--------RKNAVLYT-HVIAFSLFELETITKSFRSDYILGEGGFGTVYKGYIDENVRVGLK---SLPVAVKVLNKEGLQGHREWLTEVNFLGQLRHPNLVKLIGYCCEDDHRLLVYEFMFRGSLENHLFRRATVPLSWATRMMIAFGAAKGLAFLHNAERPV 672
            MGNC   + SA V        H  S+S   K   K +RS       +T  + + S         +  +L + ++ AF+  EL+  TK+FR D +LGEGGFG V+KG+ID+      +    + VAVK L  EG QGH+EWLTEVN+LGQL HPNLV L+GYC E ++RLLVYEFM +GSLENHLFRR   PL+WA RM +A GAAKGL FLH A+  V
Sbjct:    1 MGNC--LDSSAKVDNSN-HSPHANSASSGSKVSSKTSRSTGPSGLSTTSYSTDSSFGPLPTLRTEGEILSSPNLKAFTFNELKNATKNFRQDNLLGEGGFGCVFKGWIDQTSLTASRPGSGIVVAVKQLKPEGFQGHKEWLTEVNYLGQLSHPNLVLLVGYCAEGENRLLVYEFMPKGSLENHLFRRGAQPLTWAIRMKVAVGAAKGLTFLHEAKSQV 215          
BLAST of CF417620 vs. ExPASy Swiss-Prot
Match: APK1A_ARATH (Protein kinase APK1A, chloroplastic OS=Arabidopsis thaliana GN=APK1A PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.640e-44
Identity = 96/192 (50.00%), Postives = 125/192 (65.10%), Query Frame = 1
Query:  112 QLHMLSSSLPVKPERKHNRSISDLSDPSTPRNLEDSRKNAVLYTHVIAFSLFELETITKSFRSDYILGEGGFGTVYKGYIDENVRVGLK---SLPVAVKVLNKEGLQGHREWLTEVNFLGQLRHPNLVKLIGYCCEDDHRLLVYEFMFRGSLENHLFRRATV--PLSWATRMMIAFGAAKGLAFLHNAERPV 672
            Q+   SS    K + K   S+   +   + R    +    +   ++ +FS  EL++ T++FR D +LGEGGFG V+KG+IDE      +    L +AVK LN++G QGH+EWL EVN+LGQ  H +LVKLIGYC ED+HRLLVYEFM RGSLENHLFRR     PLSW  R+ +A GAAKGLAFLH++E  V
Sbjct:    8 QVKAESSGASTKYDAKDIGSLGSKASSVSVRPSPRTEGEILQSPNLKSFSFAELKSATRNFRPDSVLGEGGFGCVFKGWIDEKSLTASRPGTGLVIAVKKLNQDGWQGHQEWLAEVNYLGQFSHRHLVKLIGYCLEDEHRLLVYEFMPRGSLENHLFRRGLYFQPLSWKLRLKVALGAAKGLAFLHSSETRV 199          
BLAST of CF417620 vs. ExPASy Swiss-Prot
Match: Y5707_ARATH (Probable receptor-like protein kinase At5g47070 OS=Arabidopsis thaliana GN=At5g47070 PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 6.724e-38
Identity = 84/173 (48.55%), Postives = 105/173 (60.69%), Query Frame = 1
Query:  163 NRSISDLSDPSTPRNLEDSRKNAVLYT----HVIAFSLFELETITKSFRSDYILGEGGFGTVYKGYIDENVRVGLKSLPVAVKVLNKEGLQGHREWLTEVNFLGQLRHPNLVKLIGYCCEDD----HRLLVYEFMFRGSLENHLFRRATVPLSWATRMMIAFGAAKGLAFLHN 657
            NRS +   +  TPR+L   R    LYT    ++  FS  EL   T  F    ++GEGGFG VYKG I  N       L VA+K LN++GLQGH++WL EV FLG + HPN+VKLIGYC ED      RLLVYE+M   SLE+HLF R +  L W  R+ I  GAA+GL +LH+
Sbjct:   39 NRSETSSFNLQTPRSLPSPRSIKDLYTEREQNLRVFSYEELSKATYVFSRKLVIGEGGFGIVYKGKILSNGDSSDPPLVVAIKKLNRQGLQGHKQWLAEVQFLGVVNHPNVVKLIGYCSEDGETGIERLLVYEYMSNRSLEDHLFPRRSHTLPWKKRLEIMLGAAEGLTYLHD 211          

HSP 2 Score: 29.261 bits (64), Expect = 6.724e-38
Identity = 11/16 (68.75%), Postives = 14/16 (87.50%), Query Frame = 2
Query:  674 IYRDFKTSNILLDSDY 721
            IYRDFK+SN+LLD  +
Sbjct:  215 IYRDFKSSNVLLDDQF 230          
BLAST of CF417620 vs. ExPASy Swiss-Prot
Match: CX32_ARATH (Probable serine/threonine-protein kinase Cx32, chloroplastic OS=Arabidopsis thaliana GN=At4g35600 PE=1 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 4.650e-36
Identity = 78/143 (54.55%), Postives = 100/143 (69.93%), Query Frame = 1
Query:  256 FSLFELETITKSFRSDYILGEGGFGTVYKGYIDENV----RVGLKSLPVAVKVLNKEGLQGHREWLTEVNFLGQLRHPNLVKLIGYCCEDDHRLLVYEFMFRGSLENHLFRRATVPLSWATRMMIAFGAAKGLAFLHNAERPV 672
            ++  +L+T TK+F+ D +LG+GGFG VY+G++D       RVG   + VA+K LN E +QG  EW +EVNFLG L H NLVKL+GYC ED   LLVYEFM +GSLE+HLFRR   P  W  R+ I  GAA+GLAFLH+ +R V
Sbjct:   74 YNFLDLKTATKNFKPDSMLGQGGFGKVYRGWVDATTLAPSRVG-SGMIVAIKRLNSESVQGFAEWRSEVNFLGMLSHRNLVKLLGYCREDKELLLVYEFMPKGSLESHLFRR-NDPFPWDLRIKIVIGAARGLAFLHSLQREV 214          
BLAST of CF417620 vs. ExPASy Swiss-Prot
Match: PBS1_ARATH (Serine/threonine-protein kinase PBS1 OS=Arabidopsis thaliana GN=PBS1 PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.015e-33
Identity = 77/143 (53.85%), Postives = 88/143 (61.54%), Query Frame = 1
Query:  256 FSLFELETITKSFRSDYILGEGGFGTVYKGYIDENVRVGLKSLPVAVKVLNKEGLQGHREWLTEVNFLGQLRHPNLVKLIGYCCEDDHRLLVYEFMFRGSLENHL--FRRATVPLSWATRMMIAFGAAKGLAFLHNAERPVYI 678
            F+  EL   T +F  D  LGEGGFG VYKG +D   +V      VAVK L++ GLQG+RE+L EV  L  L HPNLV LIGYC + D RLLVYEFM  GSLE+HL         L W  RM IA GAAKGL FLH+   P  I
Sbjct:   74 FAFRELAAATMNFHPDTFLGEGGFGRVYKGRLDSTGQV------VAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPPDKEALDWNMRMKIAAGAAKGLEFLHDKANPPVI 210          

HSP 2 Score: 29.261 bits (64), Expect = 2.015e-33
Identity = 12/16 (75.00%), Postives = 14/16 (87.50%), Query Frame = 2
Query:  674 IYRDFKTSNILLDSDY 721
            IYRDFK+SNILLD  +
Sbjct:  210 IYRDFKSSNILLDEGF 225          
The following BLAST results are available for this feature:
BLAST of CF417620 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 249
Match NameE-valueIdentityDescription
BIK1_ARATH1.048e-4852.97Serine/threonine-protein kinase BIK1 OS=Arabidopsi... [more]
NAK_ARATH6.917e-4857.30Probable serine/threonine-protein kinase NAK OS=Ar... [more]
APK1B_ARATH5.856e-4763.45Protein kinase APK1B, chloroplastic OS=Arabidopsis... [more]
Y3545_ARATH1.608e-4660.69Probable receptor-like protein kinase At3g55450 OS... [more]
APK2B_ARATH3.795e-4649.30Protein kinase 2B, chloroplastic OS=Arabidopsis th... [more]
APK2A_ARATH9.349e-4548.17Protein kinase 2A, chloroplastic OS=Arabidopsis th... [more]
APK1A_ARATH4.640e-4450.00Protein kinase APK1A, chloroplastic OS=Arabidopsis... [more]
Y5707_ARATH6.724e-3848.55Probable receptor-like protein kinase At5g47070 OS... [more]
CX32_ARATH4.650e-3654.55Probable serine/threonine-protein kinase Cx32, chl... [more]
PBS1_ARATH2.015e-3353.85Serine/threonine-protein kinase PBS1 OS=Arabidopsi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-550 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-007_C12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417620 ID=CF417620; Name=CF417620; organism=Citrus sinensis; type=EST; length=721bp
CAGCAATTAATCAAACTCAAACTCACTTCCAATTTCAACAGCAGCAACAA
CAGAATGGGCAACTGTGGCACTAGGGAAGAATCCGCCGTTGTCTCCACTG
TTCAAGTTCAACAGCTTCATATGTTATCTTCTTCTTTGCCTGTTAAACCT
GAGAGGAAGCATAACCGTTCGATATCAGATCTGAGCGATCCTTCCACTCC
GCGTAATTTAGAGGACTCTAGGAAGAATGCTGTGCTCTATACTCACGTAA
TTGCCTTCTCTTTGTTCGAACTCGAGACCATTACGAAGAGCTTTCGCTCT
GATTATATTCTTGGAGAAGGCGGTTTTGGCACCGTCTATAAAGGTTACAT
TGATGAGAATGTGAGGGTCGGCCTCAAATCTTTACCCGTTGCCGTCAAGG
TCCTCAATAAGGAAGGCCTTCAGGGACACCGTGAATGGCTTACGGAGGTC
AACTTCCTAGGTCAACTTAGGCATCCGAATCTGGTTAAATTGATTGGGTA
TTGTTGCGAGGACGATCACAGGTTACTTGTGTATGAGTTCATGTTCAGAG
GAAGCCTTGAGAATCACTTGTTTCGAAGGGCAACTGTCCCACTATCATGG
GCCACAAGAATGATGATTGCTTTTGGAGCTGCCAAAGGGCTTGCTTTCCT
TCACAATGCTGAAAGGCCAGTTTATATATCGGGACTTCAAAACCTCTAAT
ATCTTGTTGGACTCAGATTAT
back to top