CF417622

Overview
NameCF417622
Unique NameCF417622
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length710
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12619 contig Csv1_Contig12619:319..1030. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417622 vs. ExPASy Swiss-Prot
Match: MAF1_SOLLC (MFP1 attachment factor 1 OS=Solanum lycopersicum GN=MAF1 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.747e-22
Identity = 53/86 (61.63%), Postives = 61/86 (70.93%), Query Frame = 1
Query:  145 TFRIWPPAQRTRDAVIARLIETLTTPSVLSKRYGAMPTDEADFTARFIENXXXXXXXXXXXXXXXGIEVLQVYSKEISKRMLEAVK 402
            +F IWPP QRTRDAVI RLIE+L+TPS+LSKRYG +P DEA  TAR IE                GIE+LQVYSKEISKRM++ VK
Sbjct:   25 SFSIWPPTQRTRDAVINRLIESLSTPSILSKRYGTLPQDEASETARLIEEEAFAAAGSTASDADDGIEILQVYSKEISKRMIDTVK 110          
BLAST of CF417622 vs. ExPASy Swiss-Prot
Match: WPP2_ARATH (WPP domain-containing protein 2 OS=Arabidopsis thaliana GN=WPP2 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.142e-21
Identity = 55/128 (42.97%), Postives = 78/128 (60.94%), Query Frame = 1
Query:   22 PQQESKK-LDAINDIPQQESKKLDARNDIPQQESKKLNFSNLTFRIWPPAQRTRDAVIARLIETLTTPSVLSKRYGAMPTDEADFTARFIENXXXXXXXXXXXXXXXGIEVLQVYSKEISKRMLEAVK 402
            P+ ES   + A+ D   QE+   D   D+ ++   +     ++ RIWPP Q+TRDAV+ RLIETL+T S+LSKRYG + +D+A   A+ IE                GI++L++YSKEISKRMLE+VK
Sbjct:   17 PESESSTTISAMTDPTSQEAASKDT--DLTKEAESEKKPGGISLRIWPPTQKTRDAVLNRLIETLSTESILSKRYGTLKSDDATTVAKLIEEEAYGVASNAVSSDDDGIKILELYSKEISKRMLESVK 142          
BLAST of CF417622 vs. ExPASy Swiss-Prot
Match: WPP1_ARATH (WPP domain-containing protein 1 OS=Arabidopsis thaliana GN=WPP1 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.273e-19
Identity = 51/101 (50.50%), Postives = 69/101 (68.32%), Query Frame = 1
Query:  103 IPQQESKKL-NFSNLTFRIWPPAQRTRDAVIARLIETLTTPSVLSKRYGAMPTDEADFTARFIENXXXXXXXXXXXXXXXGIEVLQVYSKEISKRMLEAVK 402
            +P  E++K  N   ++ RIWPP Q+TRDAVI RLIETL+T S+LSKR+G++ ++EA   A+ IE+               GIE+L+ YSKEISKRMLE+VK
Sbjct:   26 LPTTETEKNPNPVTISLRIWPPTQKTRDAVINRLIETLSTESILSKRFGSLESEEASSVAKSIEDEAYAIASATVFGDDDGIEILKAYSKEISKRMLESVK 126          
BLAST of CF417622 vs. ExPASy Swiss-Prot
Match: WPP3_ARATH (WPP domain-containing protein 3 OS=Arabidopsis thaliana GN=WPP3 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.658e-11
Identity = 39/119 (32.77%), Postives = 64/119 (53.78%), Query Frame = 1
Query:   64 PQQESKKLDA------RNDIPQQESKKLNFSNLTFRIWPPAQRTRDAVIARLIETLTTPSVLSKRYGAMPTDEADFTARFIENXXXXXXXXXXXXXXXGIEVLQVYSKEISKRMLEAVK 402
            PQ ES+  +       R+D   + +K+     + F +WPP Q++RD V+  +I+TL+T S+LS +YG +  +EA   A+ IE                GI+ L+VY  E S+RM+E+ +
Sbjct:   17 PQLESRSDETSCLQKHRSDATSEVTKEEKSGGILFSVWPPCQKSRDYVVNSMIKTLSTDSILSYKYGTIKPEEASAVAKSIEE--KAYDIASRFVSSDGIKNLEVYGIETSERMIESAE 133          
The following BLAST results are available for this feature:
BLAST of CF417622 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
MAF1_SOLLC3.747e-2261.63MFP1 attachment factor 1 OS=Solanum lycopersicum G... [more]
WPP2_ARATH4.142e-2142.97WPP domain-containing protein 2 OS=Arabidopsis tha... [more]
WPP1_ARATH2.273e-1950.50WPP domain-containing protein 1 OS=Arabidopsis tha... [more]
WPP3_ARATH8.658e-1132.77WPP domain-containing protein 3 OS=Arabidopsis tha... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-552 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-007_D02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417622 ID=CF417622; Name=CF417622; organism=Citrus sinensis; type=EST; length=710bp
CAAGCTTCTCAAAACGACATTCCCCAGCAGGAATCAAAGAAACTCGACGC
CATAAACGACATTCCCCAGCAGGAATCAAAGAAACTCGACGCCAGAAACG
ACATTCCCCAGCAGGAATCAAAGAAACTCAACTTCAGCAACCTGACCTTC
CGCATATGGCCACCCGCACAGCGCACGCGCGACGCGGTGATCGCTCGCCT
TATCGAGACTCTCACCACTCCCTCCGTTCTCTCCAAACGCTACGGCGCCA
TGCCGACGGACGAGGCCGATTTCACTGCCCGCTTCATTGAGAACGATGCC
TTTTCCGTCGCCGATGCCGCCGCCTCTGCTGAGGACGATGGTATCGAGGT
CCTTCAGGTCTATTCCAAGGAGATCAGCAAGCGCATGCTCGAAGCCGTGA
AGTCACGCTCTTCTGCTGCTGCTTCTGGCATCTCTAGTGGTGTAGATGAT
ACAACCAGTCCTGCTCAACCTGCCGGAGGTCCCAACGAGGAATCTGTTTC
GTCTTCTGTTGAGACCGAGGGTTGATTTTCTCACTCTAGCCTTCTATATT
TTTTAGCGTTATTTTCTTTTAAAAAATATATATGTTATGTTAGGGTTTCT
GTTACCTTTTGTGGNTCGGAGGNTGAGATCTGTGTTTTTTTGTACTAAAA
ACGATGGATTTATGACCTTATATTATAATTTATACCCTAATATGAATATC
TAGGGTCTGA
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