CF417623

Overview
NameCF417623
Unique NameCF417623
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length665
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12296 contig Csv1_Contig12296:118..785. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417623 vs. ExPASy Swiss-Prot
Match: TPIC_SPIOL (Triosephosphate isomerase, chloroplastic OS=Spinacia oleracea GN=TPIP1 PE=1 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.120e-54
Identity = 102/132 (77.27%), Postives = 117/132 (88.64%), Query Frame = 3
Query:    3 FIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNSVSADVATKTRIIYGGSVNGSNCAELAKQEGY*WFSGWWCFLEGP 398
            FIGKKAAYAL++G+GVIACIGE L+EREAGKTFDVC+QQLKA+ADA+PSWDNVV+AYEPVWAIGTGKVA+P+QAQEVH A+RDWLK +VS +VA+KTRIIYGGSVNG NCAELAKQE    F      L+GP
Sbjct:  175 FIGKKAAYALNQGVGVIACIGELLEEREAGKTFDVCYQQLKAFADALPSWDNVVVAYEPVWAIGTGKVASPDQAQEVHVAVRDWLKKNVSEEVASKTRIIYGGSVNGGNCAELAKQEDIDGFLVGGASLKGP 306          
BLAST of CF417623 vs. ExPASy Swiss-Prot
Match: TPIC_FRAAN (Triosephosphate isomerase, chloroplastic OS=Fragaria ananassa GN=TPI PE=2 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.618e-53
Identity = 99/132 (75.00%), Postives = 118/132 (89.39%), Query Frame = 3
Query:    3 FIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNSVSADVATKTRIIYGGSVNGSNCAELAKQEGY*WFSGWWCFLEGP 398
            FIGKKAAYAL+EGLGVIACIGE+L+EREAGKTFDVC++QLKA+ADA+PSW+N+V+AYEPVWAIGTGKVA+P+QAQEVH A+R+WLK +VSA+VA+KTRIIYGGSVNG N AELAK+E    F      L+GP
Sbjct:  167 FIGKKAAYALNEGLGVIACIGEKLEEREAGKTFDVCYEQLKAFADAVPSWENIVVAYEPVWAIGTGKVASPQQAQEVHVAVREWLKKNVSAEVASKTRIIYGGSVNGGNSAELAKEEDIDGFLVGGASLKGP 298          
BLAST of CF417623 vs. ExPASy Swiss-Prot
Match: TPIC_ARATH (Triosephosphate isomerase, chloroplastic OS=Arabidopsis thaliana GN=TIM PE=1 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 2.113e-53
Identity = 101/132 (76.52%), Postives = 115/132 (87.12%), Query Frame = 3
Query:    3 FIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNSVSADVATKTRIIYGGSVNGSNCAELAKQEGY*WFSGWWCFLEGP 398
            FIGKKAAYALSEGLGVIACIGE+L+EREAGKTFDVCF QLKA+ADA+PSWDN+V+AYEPVWAIGTGKVA+P+QAQEVH A+R WLK +VS +VA+KTRIIYGGSVNG N AELAK+E    F      L+GP
Sbjct:  168 FIGKKAAYALSEGLGVIACIGEKLEEREAGKTFDVCFAQLKAFADAVPSWDNIVVAYEPVWAIGTGKVASPQQAQEVHVAVRGWLKKNVSEEVASKTRIIYGGSVNGGNSAELAKEEDIDGFLVGGASLKGP 299          
BLAST of CF417623 vs. ExPASy Swiss-Prot
Match: TPIC_SECCE (Triosephosphate isomerase, chloroplastic OS=Secale cereale PE=1 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 3.729e-50
Identity = 99/138 (71.74%), Postives = 112/138 (81.16%), Query Frame = 3
Query:    3 FIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNSVSADVATKTRIIYGGSVNGSNCAELAKQEGY*WFSGWWCFLEGPRVCHHC 416
            FIGKKAAYALS+ L V+ACIGE L+EREAGKTFDVCF+Q+KA+AD I  W NVVIAYEPVWAIGTGKVA+PEQAQEVHAA+RDWLK +VSADVA+  RIIYGGSVN +NCAELAK+E    F      L+GP     C
Sbjct:  151 FIGKKAAYALSQNLKVMACIGELLEEREAGKTFDVCFKQMKAFADNITDWTNVVIAYEPVWAIGTGKVASPEQAQEVHAAVRDWLKTNVSADVASTVRIIYGGSVNAANCAELAKKEDIDGFLVGGASLKGPDFATIC 288          
BLAST of CF417623 vs. ExPASy Swiss-Prot
Match: TPIS_STELP (Triosephosphate isomerase, cytosolic OS=Stellaria longipes GN=TPI PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 6.583e-47
Identity = 95/133 (71.43%), Postives = 107/133 (80.45%), Query Frame = 3
Query:    3 FIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYAD-AIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNSVSADVATKTRIIYGGSVNGSNCAELAKQEGY*WFSGWWCFLEGP 398
            F+GKKAAYA SEGLGVIACIGE L+EREAGKTFDVCF+QLK++A      WDNVV+AYEPVWAIGTGKVA+PEQAQEVH A+RDWLK +VS +VA+KTRIIYGGSVNG N   LA QE    F      L+GP
Sbjct:  109 FVGKKAAYAQSEGLGVIACIGELLEEREAGKTFDVCFKQLKSFARFPAKPWDNVVVAYEPVWAIGTGKVASPEQAQEVHVAVRDWLKTNVSEEVASKTRIIYGGSVNGGNSLALAAQEDVDGFLVGGASLKGP 241          
BLAST of CF417623 vs. ExPASy Swiss-Prot
Match: TPIS_MAIZE (Triosephosphate isomerase, cytosolic OS=Zea mays PE=3 SV=3)

HSP 1 Score: 166.777 bits (421), Expect = 4.246e-46
Identity = 80/116 (68.97%), Postives = 91/116 (78.45%), Query Frame = 3
Query:    3 FIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNSVSADVATKTRIIYGGSVNGSNCAELAKQ 350
            F+G K AYALS+GL VIAC+GE L++REAG T DV   Q KA A+ I  W NVV+AYEPVWAIGTGKVATP QAQEVHA+LRDWLK + S +VA  TRIIYGGSV  +NC ELA Q
Sbjct:  109 FVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIAEKIKDWSNVVVAYEPVWAIGTGKVATPAQAQEVHASLRDWLKTNASPEVAESTRIIYGGSVTAANCKELAAQ 224          

HSP 2 Score: 39.2762 bits (90), Expect = 4.246e-46
Identity = 19/27 (70.37%), Postives = 22/27 (81.48%), Query Frame = 1
Query:  355 DIDGFLVGGASLKGPEFATIVNSVTSK 435
            D+DGFLVGGASLK PEF  I+N+ T K
Sbjct:  226 DVDGFLVGGASLK-PEFIDIINAATVK 251          
BLAST of CF417623 vs. ExPASy Swiss-Prot
Match: TPIS_SECCE (Triosephosphate isomerase, cytosolic OS=Secale cereale PE=2 SV=3)

HSP 1 Score: 166.392 bits (420), Expect = 5.534e-46
Identity = 79/116 (68.10%), Postives = 94/116 (81.03%), Query Frame = 3
Query:    3 FIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNSVSADVATKTRIIYGGSVNGSNCAELAKQ 350
            F+G+K AYAL++GL VIAC+GE L++REAG T +V  +Q KA AD I  W NVV+AYEPVWAIGTGKVA+P QAQEVHA LRDWLK +VS +VA  TRIIYGGSV G++C ELA Q
Sbjct:  109 FVGEKVAYALAQGLKVIACVGETLEQREAGSTMEVVAEQTKAIADKIKDWTNVVVAYEPVWAIGTGKVASPAQAQEVHANLRDWLKTNVSPEVAESTRIIYGGSVTGASCKELAAQ 224          

HSP 2 Score: 39.2762 bits (90), Expect = 5.534e-46
Identity = 19/27 (70.37%), Postives = 22/27 (81.48%), Query Frame = 1
Query:  355 DIDGFLVGGASLKGPEFATIVNSVTSK 435
            D+DGFLVGGASLK PEF  I+N+ T K
Sbjct:  226 DVDGFLVGGASLK-PEFIDIINAATVK 251          
BLAST of CF417623 vs. ExPASy Swiss-Prot
Match: TPIS_ARATH (Triosephosphate isomerase, cytosolic OS=Arabidopsis thaliana GN=CTIMC PE=1 SV=2)

HSP 1 Score: 166.392 bits (420), Expect = 1.225e-45
Identity = 81/116 (69.83%), Postives = 90/116 (77.59%), Query Frame = 3
Query:    3 FIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNSVSADVATKTRIIYGGSVNGSNCAELAKQ 350
            F+G K AYAL++GL VIAC+GE L+EREAG T DV   Q KA AD + +W NVVIAYEPVWAIGTGKVA+P QAQEVH  LR WL  +VSADVA  TRIIYGGSVNG NC EL  Q
Sbjct:  109 FVGDKVAYALAQGLKVIACVGETLEEREAGSTMDVVAAQTKAIADRVTNWSNVVIAYEPVWAIGTGKVASPAQAQEVHDELRKWLAKNVSADVAATTRIIYGGSVNGGNCKELGGQ 224          

HSP 2 Score: 38.1206 bits (87), Expect = 1.225e-45
Identity = 20/35 (57.14%), Postives = 24/35 (68.57%), Query Frame = 1
Query:  340 LQNKRDIDGFLVGGASLKGPEFATIVNSVTSKKVA 444
            L  + D+DGFLVGGASLK PEF  I+ +   KK A
Sbjct:  221 LGGQADVDGFLVGGASLK-PEFIDIIKAAEVKKSA 254          
BLAST of CF417623 vs. ExPASy Swiss-Prot
Match: TPIS_LACSA (Triosephosphate isomerase, cytosolic (Fragment) OS=Lactuca sativa PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.090e-45
Identity = 80/116 (68.97%), Postives = 93/116 (80.17%), Query Frame = 3
Query:    3 FIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNSVSADVATKTRIIYGGSVNGSNCAELAKQ 350
            F+G K AYALS+GL VIAC+GE L++REAG T +V   Q KA AD I SWDNVV+AYEPVWAIGTGKVA+P QAQEVHA LR W  ++VSA+V+  TRIIYGGSV+GSNC EL  Q
Sbjct:   50 FVGDKVAYALSQGLKVIACVGETLEQREAGTTMEVVAAQTKAIADKISSWDNVVLAYEPVWAIGTGKVASPAQAQEVHAGLRKWFCDNVSAEVSASTRIIYGGSVSGSNCKELGGQ 165          

HSP 2 Score: 38.1206 bits (87), Expect = 2.090e-45
Identity = 20/35 (57.14%), Postives = 24/35 (68.57%), Query Frame = 1
Query:  340 LQNKRDIDGFLVGGASLKGPEFATIVNSVTSKKVA 444
            L  + D+DGFLVGGASLK PEF  I+ +   KK A
Sbjct:  162 LGGQTDVDGFLVGGASLK-PEFIDIIKAAEVKKSA 195          
BLAST of CF417623 vs. ExPASy Swiss-Prot
Match: TPIS_ORYSJ (Triosephosphate isomerase, cytosolic OS=Oryza sativa subsp. japonica GN=TPI PE=1 SV=3)

HSP 1 Score: 160.999 bits (406), Expect = 3.534e-45
Identity = 77/114 (67.54%), Postives = 90/114 (78.95%), Query Frame = 3
Query:    3 FIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNSVSADVATKTRIIYGGSVNGSNCAELA 344
            F+G K AYALS+GL VIAC+GE L++RE+G T DV   Q KA ++ I  W NVV+AYEPVWAIGTGKVATP+QAQEVH  LR WL  +VSA+VA  TRIIYGGSV G+NC ELA
Sbjct:  109 FVGDKVAYALSQGLKVIACVGETLEQRESGSTMDVVAAQTKAISERIKDWTNVVVAYEPVWAIGTGKVATPDQAQEVHDGLRKWLAANVSAEVAESTRIIYGGSVTGANCKELA 222          

HSP 2 Score: 41.9726 bits (97), Expect = 3.534e-45
Identity = 22/32 (68.75%), Postives = 24/32 (75.00%), Query Frame = 1
Query:  340 LQNKRDIDGFLVGGASLKGPEFATIVNSVTSK 435
            L  K D+DGFLVGGASLK PEF  I+NS T K
Sbjct:  221 LAAKPDVDGFLVGGASLK-PEFIDIINSATVK 251          
The following BLAST results are available for this feature:
BLAST of CF417623 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIC_SPIOL1.120e-5477.27Triosephosphate isomerase, chloroplastic OS=Spinac... [more]
TPIC_FRAAN1.618e-5375.00Triosephosphate isomerase, chloroplastic OS=Fragar... [more]
TPIC_ARATH2.113e-5376.52Triosephosphate isomerase, chloroplastic OS=Arabid... [more]
TPIC_SECCE3.729e-5071.74Triosephosphate isomerase, chloroplastic OS=Secale... [more]
TPIS_STELP6.583e-4771.43Triosephosphate isomerase, cytosolic OS=Stellaria ... [more]
TPIS_MAIZE4.246e-4668.97Triosephosphate isomerase, cytosolic OS=Zea mays P... [more]
TPIS_SECCE5.534e-4668.10Triosephosphate isomerase, cytosolic OS=Secale cer... [more]
TPIS_ARATH1.225e-4569.83Triosephosphate isomerase, cytosolic OS=Arabidopsi... [more]
TPIS_LACSA2.090e-4568.97Triosephosphate isomerase, cytosolic (Fragment) OS... [more]
TPIS_ORYSJ3.534e-4567.54Triosephosphate isomerase, cytosolic OS=Oryza sati... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-553 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-007_D03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417623 ID=CF417623; Name=CF417623; organism=Citrus sinensis; type=EST; length=665bp
AGTTTATAGGGAAGAAAGCTGCCTATGCCTTGAGCGAGGGACTTGGTGTC
ATAGCTTGTATCGGGGAACAGTTGCAAGAAAGAGAAGCAGGGAAAACTTT
TGATGTCTGTTTTCAGCAACTTAAAGCCTATGCAGATGCTATACCCAGTT
GGGATAATGTAGTCATTGCATATGAGCCCGTTTGGGCTATTGGAACTGGT
AAAGTGGCCACCCCTGAGCAGGCTCAGGAAGTACATGCTGCTCTTCGTGA
TTGGCTTAAAAACAGTGTCTCAGCAGACGTTGCCACTAAAACACGTATTA
TCTATGGAGGGTCAGTAAATGGAAGCAATTGTGCTGAACTTGCAAAACAA
GAGGGATATTGATGGTTTTCTGGTTGGTGGTGCTTCCTTGAAGGGCCCAG
AGTTTGCCACCATTGTCAATTCCGTAACATCCAAGAAAGTAGCTGCGTGA
TGTATAAACCTGTTTTGTCAAGATCAACCAATAATGGGCTAAGAGAATCT
ATATCAGTTTAAAGCTAATTATCGTAACCAGCCTATGCCCTTGCTATGTT
CAACGAAGTTTTGATAGTTTATTTATTTGTTTCTCCTTCCCCNAACAATC
GGAGGTTCCTTCTGTTTCTCTATTGTGGGCTGAACTTGTTTGATACCGGA
CAGGAGAACAATATA
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