CF417624

Overview
NameCF417624
Unique NameCF417624
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length514
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1705 contig Csv1_Contig1705:42..556. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417624 vs. ExPASy Swiss-Prot
Match: RK31_ARATH (50S ribosomal protein L31, chloroplastic OS=Arabidopsis thaliana GN=RPL31 PE=1 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 2.709e-45
Identity = 88/132 (66.67%), Postives = 102/132 (77.27%), Query Frame = 3
Query:    3 MAQTLPNTFFQIKPSAPILPTRKVKNCAATGSGYRTRA-------VTCRKKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFGGLSEIMEIPVLKGEIVLP 377
            MA +LPN+F QI P  P L  RK    A  G     R        +TCRKK++HP+F+EDAKVYCNGELVMTTGGT+KEYVVDVWSGNH FYLG RSA++VDADQVEKFR++F GLSEIMEIPVLKGEI++P
Sbjct:    1 MAVSLPNSFLQISPCVPSLQLRKPVMAAVKGGKQSVRRSSNTVVQITCRKKELHPEFHEDAKVYCNGELVMTTGGTKKEYVVDVWSGNHPFYLGNRSALMVDADQVEKFRKRFAGLSEIMEIPVLKGEIIMP 132          
BLAST of CF417624 vs. ExPASy Swiss-Prot
Match: RL31_SYNP6 (50S ribosomal protein L31 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rpmE PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.311e-15
Identity = 39/67 (58.21%), Postives = 48/67 (71.64%), Query Frame = 3
Query:  129 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFGGL 329
            K DIHPQ+Y +AKVYCNGE VMT G TQ E  VDVWSGNH FY G +  +  +  +VE+F +K+G L
Sbjct:    3 KADIHPQWYPEAKVYCNGEEVMTVGSTQPELHVDVWSGNHPFYTGTQKIIDTEG-RVERFLRKYGML 68          
BLAST of CF417624 vs. ExPASy Swiss-Prot
Match: RL31_SYNE7 (50S ribosomal protein L31 OS=Synechococcus elongatus (strain PCC 7942) GN=rpmE PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.311e-15
Identity = 39/67 (58.21%), Postives = 48/67 (71.64%), Query Frame = 3
Query:  129 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFGGL 329
            K DIHPQ+Y +AKVYCNGE VMT G TQ E  VDVWSGNH FY G +  +  +  +VE+F +K+G L
Sbjct:    3 KADIHPQWYPEAKVYCNGEEVMTVGSTQPELHVDVWSGNHPFYTGTQKIIDTEG-RVERFLRKYGML 68          
BLAST of CF417624 vs. ExPASy Swiss-Prot
Match: RL31_PROMA (50S ribosomal protein L31 OS=Prochlorococcus marinus GN=rpmE PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.921e-15
Identity = 37/65 (56.92%), Postives = 48/65 (73.85%), Query Frame = 3
Query:  129 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFG 323
            KKDIHP +Y DAKV CNGE+VMTTG TQ E  VDVWSGNH F+ G +  +  +  +V++F +K+G
Sbjct:    3 KKDIHPNWYPDAKVICNGEVVMTTGSTQPEIHVDVWSGNHPFFTGTQKILDTEG-RVDRFMRKYG 66          
BLAST of CF417624 vs. ExPASy Swiss-Prot
Match: RL31_THEEB (50S ribosomal protein L31 OS=Thermosynechococcus elongatus (strain BP-1) GN=rpmE PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.983e-15
Identity = 36/67 (53.73%), Postives = 52/67 (77.61%), Query Frame = 3
Query:  129 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDAD-QVEKFRQKFGG 326
            K +IHPQ+Y +AKVYC+GE++MT G T+ E  VD+WSGNH F+ G +   +VDA+ +VE+FR+K+ G
Sbjct:    3 KPNIHPQWYPEAKVYCDGEVIMTVGSTKPELHVDIWSGNHPFFTGTQK--IVDAEGRVERFRRKYSG 67          
BLAST of CF417624 vs. ExPASy Swiss-Prot
Match: RL31_NOSP7 (50S ribosomal protein L31 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=rpmE PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.983e-15
Identity = 36/65 (55.38%), Postives = 48/65 (73.85%), Query Frame = 3
Query:  129 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFG 323
            K DIHP++Y DAKVYCNG++VMT G T+ E  VDVWSGNH FY G +  +  +  +VE+F +K+G
Sbjct:    3 KADIHPKWYPDAKVYCNGQVVMTIGSTKPELHVDVWSGNHPFYTGTQKIIDTEG-RVERFLRKYG 66          
BLAST of CF417624 vs. ExPASy Swiss-Prot
Match: RL31_ANAVT (50S ribosomal protein L31 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rpmE PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 8.500e-15
Identity = 35/65 (53.85%), Postives = 48/65 (73.85%), Query Frame = 3
Query:  129 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFG 323
            K DIHP++Y +AKVYCNG++VMT G T+ E  VDVWSGNH FY G +  +  +  +VE+F +K+G
Sbjct:    3 KSDIHPKWYPEAKVYCNGQVVMTVGSTKPELHVDVWSGNHPFYTGTQKIIDTEG-RVERFLRKYG 66          
BLAST of CF417624 vs. ExPASy Swiss-Prot
Match: RL31_ANASP (50S ribosomal protein L31 OS=Anabaena sp. (strain PCC 7120) GN=rpmE PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 8.500e-15
Identity = 35/65 (53.85%), Postives = 48/65 (73.85%), Query Frame = 3
Query:  129 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFG 323
            K DIHP++Y +AKVYCNG++VMT G T+ E  VDVWSGNH FY G +  +  +  +VE+F +K+G
Sbjct:    3 KSDIHPKWYPEAKVYCNGQVVMTVGSTKPELHVDVWSGNHPFYTGTQKIIDTEG-RVERFLRKYG 66          
BLAST of CF417624 vs. ExPASy Swiss-Prot
Match: RL31_ACAM1 (50S ribosomal protein L31 OS=Acaryochloris marina (strain MBIC 11017) GN=rpmE PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 8.500e-15
Identity = 35/65 (53.85%), Postives = 49/65 (75.38%), Query Frame = 3
Query:  129 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFG 323
            K DIHP++Y +AKVYC+GE+VMT G TQ+E  VDVWSGNH F+ G +  +  +  +VE+F +K+G
Sbjct:    3 KPDIHPKWYPEAKVYCDGEVVMTVGSTQEELHVDVWSGNHPFFTGTQKIIDTEG-RVERFMRKYG 66          
BLAST of CF417624 vs. ExPASy Swiss-Prot
Match: RL31_SYNP2 (50S ribosomal protein L31 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rpmE PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.110e-14
Identity = 36/68 (52.94%), Postives = 49/68 (72.06%), Query Frame = 3
Query:  129 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFGGLS 332
            K DIHP++Y DAKV CNGE+VMT G TQ E  V++WSGNH FY G +  +  +  +V++F +K+G LS
Sbjct:    3 KADIHPEWYPDAKVICNGEVVMTIGSTQPEINVEIWSGNHPFYTGTQKIIDTEG-RVDRFLRKYGMLS 69          
The following BLAST results are available for this feature:
BLAST of CF417624 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
RK31_ARATH2.709e-4566.6750S ribosomal protein L31, chloroplastic OS=Arabid... [more]
RL31_SYNP61.311e-1558.2150S ribosomal protein L31 OS=Synechococcus sp. (st... [more]
RL31_SYNE71.311e-1558.2150S ribosomal protein L31 OS=Synechococcus elongat... [more]
RL31_PROMA2.921e-1556.9250S ribosomal protein L31 OS=Prochlorococcus marin... [more]
RL31_THEEB4.983e-1553.7350S ribosomal protein L31 OS=Thermosynechococcus e... [more]
RL31_NOSP74.983e-1555.3850S ribosomal protein L31 OS=Nostoc punctiforme (s... [more]
RL31_ANAVT8.500e-1553.8550S ribosomal protein L31 OS=Anabaena variabilis (... [more]
RL31_ANASP8.500e-1553.8550S ribosomal protein L31 OS=Anabaena sp. (strain ... [more]
RL31_ACAM18.500e-1553.8550S ribosomal protein L31 OS=Acaryochloris marina ... [more]
RL31_SYNP21.110e-1452.9450S ribosomal protein L31 OS=Synechococcus sp. (st... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-554 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-007_D04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417624 ID=CF417624; Name=CF417624; organism=Citrus sinensis; type=EST; length=514bp
AAATGGCGCAGACTTTACCCAACACATTCTTCCAAATCAAACCCTCTGCT
CCAATTCTCCCCACCAGAAAGGTGAAGAACTGTGCAGCAACGGGCAGTGG
TTACAGGACCCGGGCGGTGACGTGTCGAAAGAAGGACATACACCCTCAAT
TCTACGAGGATGCAAAAGTGTACTGTAACGGTGAGCTCGTAATGACGACG
GGTGGGACCCAGAAGGAGTACGTGGTGGATGTCTGGTCGGGAAACCATGC
GTTTTACCTCGGCGGCCGCTCTGCTGTTGTCGTCGACGCCGACCAAGTCG
AGAAGTTCCGTCAGAAGTTCGGAGGATTGTCTGAGATTATGGAAATTCCC
GTGCTTAAAGGAGAGATTGTGTTGCCGCCTAAGCGCAAGTCCGCGGCCGC
TAAAGGTGGCAAGAAGAAGTANAAATTTGGTACGGCGTTGTTTTGAGGTA
ATTGGGGAATGTTTGTGAGTGGATGGATTTTATTTGATCGAATGATGTGT
TGATATTTGAACGA
back to top